mRNA_F-serratus_M_contig6292.17136.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6292.17136.1
Unique NamemRNA_F-serratus_M_contig6292.17136.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: D7G8B5_ECTSI (Mitochondrial carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8B5_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 1.060e-120
Identity = 200/314 (63.69%), Postives = 233/314 (74.20%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLDRAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVV----------GAIRSRLSDFPIF-SVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRR----SAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEV-EGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAERA 894
            +GT AAL HIA+WEGPRGLYRG++ SLVMA+PS VLYYTVYDD L RL++AGVG++  P T+G+ AR+LATV MAPLELVRTR Q+                      G       + P+  SV ++++ V ++EG  ALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGC R+    +A   GG   G AG   A++RGSADFLLRS  AGA+SG+VASLLTHPFDVVKTQ QV+V  V E  CEHRPPPP  PRR PGTF+VMRNIV+S+G AGL+TGAL RVGKVAPACAIM+ SYEAGKRFF ERNA  A
Sbjct:  128 TGTVAALMHIARWEGPRGLYRGLDASLVMAIPSTVLYYTVYDDFLARLEKAGVGNLAAPATAGSSARLLATVVMAPLELVRTRAQSHGXXXXXXXXXXXXXXXVATGPGRGAGLWGEIPLVGSVGRDLTKVFQEEGMAALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCGRKGGAPAASAAGGGGRGTAGL--AEERGSADFLLRSLVAGAVSGMVASLLTHPFDVVKTQRQVLVDVVPESGCEHRPPPP--PRREPGTFDVMRNIVKSKGPAGLFTGALARVGKVAPACAIMMISYEAGKRFFGERNAAAA 437          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A6I9PAV6_9TELE (solute carrier family 25 member 40 n=4 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9PAV6_9TELE)

HSP 1 Score: 182 bits (463), Expect = 7.750e-52
Identity = 122/301 (40.53%), Postives = 167/301 (55.48%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG---SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
            +GT  A   I + EG + L+ G+  +LVMAVP+ V+Y+T YD +   L  R G  S   P+ +GA+ARV +   ++PLEL+RT++Q+QK +     E+   IRS                 VR EG L+LWRG+G T+ RDVPFS +YW  YE  K+ L C+R    RE                     L  +F +GA+SG +AS++T PFDVVKT+ Q+ + E++    SC+              TF VMR IV   G +GL+ G +PR+ KVAPACAIMI SYE GK FF + N ER
Sbjct:   84 NGTMDAFVKIVRHEGTKALWSGLPPTLVMAVPATVIYFTCYDQLCSALRVRMGDYSQEAPLLAGAVARVGSATVISPLELIRTQLQSQKQSY---RELTDCIRS----------------AVRSEGWLSLWRGLGPTLLRDVPFSAMYWYNYEKGKSWL-CERSHT-RE-------------------PTLTITFVSGAMSGSIASIVTLPFDVVKTRRQLELGELQAKNLSCQVSS----------STFSVMRRIVAQSGFSGLFAGFIPRLIKVAPACAIMISSYEFGKTFFRKHNEER 334          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A1Y1YP69_9FUNG (Mitochondrial carrier n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YP69_9FUNG)

HSP 1 Score: 181 bits (459), Expect = 5.200e-51
Identity = 111/295 (37.63%), Postives = 157/295 (53.22%), Query Frame = 1
Query:    4 GTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYD---DILGRLDRAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAER 879
            GTW  +  IA+ EG   L++G+  +L+M +P+  +YY  YD   D +    R  V     P   G+IAR  A  C++P+EL+RTRVQ+  + T++ E + G                 VS +V++ G L+LW+G+  T+WRDVPFS +YW+GYE +K  L  +                    D+   +D    +F AGA+SG +A+ LT PFDV KT +QV       S           +  P  +EVMRNI +  G  GL+TG +PRV KVAP+CAIMI SYE GK  F E+
Sbjct:  116 GTWDGVVKIARHEGVTKLWKGLSPTLLMQLPATAIYYVGYDYMRDFIKLNIRDPVVEKYSPFIVGSIARTCAVTCISPIELIRTRVQSAASGTSLTEVMSG-----------------VSNMVKRAGVLSLWKGLSPTLWRDVPFSGLYWMGYETIKHQLKLNHTG-----------------DRLTPSDEFQFAFIAGAVSGSIAATLTTPFDVAKTHIQVDTSNDVTS-----------KAKPKVYEVMRNIFKKDGCRGLFTGLVPRVAKVAPSCAIMISSYEVGKALFREQ 365          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A5A8CM33_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CM33_CAFRO)

HSP 1 Score: 181 bits (458), Expect = 5.270e-51
Identity = 122/300 (40.67%), Postives = 163/300 (54.33%), Query Frame = 1
Query:   25 HIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSV---LGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRS-----------RLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAER 879
            H+A+ EG   L+ G+  +LVMAVPS ++Y+T YD++   L+ R   GS    L P+ +G +AR  A   ++PLELVRT++QA  A   ++    GA R+           R +     S+   ++  VR  G  +LWRGV  T+WRDVPFSMVYWLGYE L+           RE G+++        D    A     +F AGA SG VA++LT PFDVVKT++QV +   +     R P      R P T E +  +    G A L+TG   RV KVAPACAIMI SYEA K F A R
Sbjct:   65 HVARTEGAAALWSGVLPTLVMAVPSTMMYFTAYDELKETLEGRTAPGSAVHQLAPLIAGGVARAGAATVVSPLELVRTKLQAPAAAKLLDAASSGASRAASPLQLARALGRAAGQAGSSMRLAIAEEVRLGGVASLWRGVVPTLWRDVPFSMVYWLGYERLRE---ASTALIARETGSSM--------DHPPIAQRFAVAFAAGAGSGSVAAVLTTPFDVVKTRVQVRLFRQQQEARRRGPGCAG-LRTPSTLEALLTVAREEGAASLFTGLGARVAKVAPACAIMISSYEACKLFLARR 352          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A4W6BRM2_LATCA (Solute carrier family 25 member 40 n=28 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6BRM2_LATCA)

HSP 1 Score: 180 bits (457), Expect = 6.370e-51
Identity = 123/301 (40.86%), Postives = 167/301 (55.48%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG---SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
            +GT  A   I + EG + L+ G+  +LVMAVP+ V+Y+T YD +   L  R G  +   P+ +GAIARV +   ++PLEL+RT++Q+QK +     E+   IRS                 V  EG L+LWRG+G T+ RDVPFS VYW  YE  K+ L C+R +  RE                    F + +F +GA+SG +AS++T PFDVVKT+ QV + E++    SC+              TF VMR IV   G  GL+ G LPR+ KVAPACAIMI +YE GK FF + N ER
Sbjct:   86 NGTLDAFVKIVRCEGIKALWSGLPPTLVMAVPATVIYFTCYDQLCAALRVRMGAHAEEAPLLAGAIARVGSATVISPLELIRTKLQSQKQSY---RELTDCIRS----------------AVETEGWLSLWRGLGPTLLRDVPFSAVYWYNYEKGKSWL-CERYNT-RE------------------PTFTI-TFISGAVSGSIASIVTLPFDVVKTRRQVELGELQARNLSCQVSS----------STFSVMRRIVAQDGFVGLFAGFLPRLIKVAPACAIMISTYEFGKAFFHKHNQER 336          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: UPI0009B3DD95 (solute carrier family 25 member 40 isoform X2 n=1 Tax=Monopterus albus TaxID=43700 RepID=UPI0009B3DD95)

HSP 1 Score: 179 bits (455), Expect = 6.390e-51
Identity = 121/299 (40.47%), Postives = 168/299 (56.19%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG-SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
            +GT  A   I + EG + L+ G+  +LVMAVP+ V+Y+T YD +   L  R G  +   P+ +GAIARV +   ++PLEL+RT++Q+QK +     E++  IRS                 V KEG L+LWRG+G T+ RDVPFS +YW  YE  K+ L C++ +  RE                    F + +F +GA+SG +AS++T PFDVVKT+ QV + E++  +  H+            T  VMR IV   G  GL+ G LPR+ KVAPACAIMI SYE GK FF + N ER
Sbjct:   60 NGTVDAFVQIVRHEGIKALWSGLPPTLVMAVPATVIYFTCYDQLCAALKVRMGERAREAPLLAGAIARVGSATVISPLELIRTKLQSQKQSY---RELMDCIRS----------------AVEKEGRLSLWRGLGPTLLRDVPFSAMYWYNYERSKSWL-CEQYNT-RE------------------PTFAI-TFISGAVSGSIASIVTLPFDVVKTRRQVELGELQAKNLSHQVSS--------STLSVMRRIVAHNGFGGLFAGFLPRLIKVAPACAIMISSYEFGKAFFRKHNQER 310          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: W5MWD2_LEPOC (Solute carrier family 25 member 40 n=2 Tax=Lepisosteidae TaxID=7915 RepID=W5MWD2_LEPOC)

HSP 1 Score: 179 bits (455), Expect = 1.200e-50
Identity = 122/298 (40.94%), Postives = 167/298 (56.04%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
            +GT  A   I + EG + L+ G+  +LVMAVP+ V+Y+T YD +   L  R G  S   P+ +GA+ARV +   ++PLEL+RT++Q+QK +              L+ F   SVA +        G L+LWRG+G T+ RDVPFS +YW  YE  K  L C++  A RE                    F++ +FT+GA+SG +AS++T PFDVVKT+ Q+ + E+E            PR    T  VMR IV   G+ GL+ G LPR+ KVAPACAIMI +YE GK FF  RN ER
Sbjct:   85 TGTLDAFIKIIQKEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLCAILKYRMGSDSNEAPLLAGALARVGSVTVISPLELIRTKMQSQKLSYR-----------ELNTFIRTSVAAD--------GWLSLWRGLGPTLLRDVPFSAMYWYNYELGKKWL-CEKNDA-RE------------------PTFMI-TFTSGAVSGSIASIITLPFDVVKTRRQIELGELEALN-------LSPRASSSTMHVMRRIVAENGVRGLFAGFLPRLIKVAPACAIMISTYEFGKAFFHRRNRER 335          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A3Q3Q3H5_MONAL (Solute carrier family 25 member 40 n=11 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3Q3H5_MONAL)

HSP 1 Score: 179 bits (455), Expect = 1.260e-50
Identity = 121/299 (40.47%), Postives = 168/299 (56.19%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG-SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
            +GT  A   I + EG + L+ G+  +LVMAVP+ V+Y+T YD +   L  R G  +   P+ +GAIARV +   ++PLEL+RT++Q+QK +     E++  IRS                 V KEG L+LWRG+G T+ RDVPFS +YW  YE  K+ L C++ +  RE                    F + +F +GA+SG +AS++T PFDVVKT+ QV + E++  +  H+            T  VMR IV   G  GL+ G LPR+ KVAPACAIMI SYE GK FF + N ER
Sbjct:   86 NGTVDAFVQIVRHEGIKALWSGLPPTLVMAVPATVIYFTCYDQLCAALKVRMGERAREAPLLAGAIARVGSATVISPLELIRTKLQSQKQSY---RELMDCIRS----------------AVEKEGRLSLWRGLGPTLLRDVPFSAMYWYNYERSKSWL-CEQYNT-RE------------------PTFAI-TFISGAVSGSIASIVTLPFDVVKTRRQVELGELQAKNLSHQVSS--------STLSVMRRIVAHNGFGGLFAGFLPRLIKVAPACAIMISSYEFGKAFFRKHNQER 336          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: UPI0018D800CA (solute carrier family 25 member 40-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D800CA)

HSP 1 Score: 180 bits (457), Expect = 1.320e-50
Identity = 119/295 (40.34%), Postives = 164/295 (55.59%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERN 882
            +GT  A+  IAK EG   L+ G+  +L+MAVP+ VLYYT YD +   +  + G  S+L PM SG +ARV A   ++PLELVRT++Q++  T     E+V  IR+ + D                EG L+LWRG+G T+ RDVPFSM+ W+ YE +KA + C +                     R    FL  SF AGA+SG VA++LT PFDVVKT  Q+ + E   + +          R   T+ +M+ +   RG  GL+ G  PR+ KV PACA+MI +YEAGK FF +RN
Sbjct:  119 NGTVDAMFKIAKNEGISKLWSGLPPTLLMAVPATVLYYTCYDQLKEWMGYQNGKSSMLIPMASGGLARVFAVTVISPLELVRTKMQSRPLTY---NELVSCIRTAIQD----------------EGWLSLWRGLGPTLLRDVPFSMILWVSYEYMKARV-CLKY-------------------HRKEPTFLA-SFLAGAVSGTVAAVLTSPFDVVKTHRQIELGEAMFNTKKD-----SSYRASSTWHIMQRLYAERGFRGLFAGISPRIAKVTPACAMMISTYEAGKAFFHKRN 368          
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A1S3RAF3_SALSA (solute carrier family 25 member 39-like isoform X4 n=6 Tax=Salmoninae TaxID=504568 RepID=A0A1S3RAF3_SALSA)

HSP 1 Score: 178 bits (451), Expect = 2.590e-50
Identity = 127/302 (42.05%), Postives = 171/302 (56.62%), Query Frame = 1
Query:    1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLDRAGVGSVLG--PMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAERARQ 900
            SGT  A   I + EG R L+RG+  +LVMAVP+ V+Y+T YD +   L R G+G      P+ +G +AR+ A   ++PLELVRT++Q+QK T +   E+   IRS                 V ++G L+LWRG G T+ RDVPFS +YW  YE +KA L CD+    +                   A F + SFTAGAISG VA+++T PFDVVKT+ QV + E+E        P + P     T+ +MR I    G  GL+ G LPRV KVAPACA+MI +YE GK FF + N +R +Q
Sbjct:   66 SGTLDAFVKITRNEGVRSLWRGLPPTLVMAVPATVIYFTCYDQLRDLL-RYGMGFQGNYIPLVAGGLARLGAVSVISPLELVRTKMQSQKLTYS---ELRVCIRSS----------------VAQDGWLSLWRGWGPTVLRDVPFSALYWFNYELVKAQL-CDQYDVSQ-------------------ATFSI-SFTAGAISGAVAAIMTLPFDVVKTRRQVQLGEMETLGV----PVKNPT---STWHIMRGIWAESGYRGLFAGFLPRVIKVAPACAVMISTYEFGKIFFQKMNLDREQQ 319          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8B5_ECTSI1.060e-12063.69Mitochondrial carrier protein n=2 Tax=Ectocarpus T... [more]
A0A6I9PAV6_9TELE7.750e-5240.53solute carrier family 25 member 40 n=4 Tax=Notothe... [more]
A0A1Y1YP69_9FUNG5.200e-5137.63Mitochondrial carrier n=2 Tax=Basidiobolus meristo... [more]
A0A5A8CM33_CAFRO5.270e-5140.67Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A4W6BRM2_LATCA6.370e-5140.86Solute carrier family 25 member 40 n=28 Tax=Percom... [more]
UPI0009B3DD956.390e-5140.47solute carrier family 25 member 40 isoform X2 n=1 ... [more]
W5MWD2_LEPOC1.200e-5040.94Solute carrier family 25 member 40 n=2 Tax=Lepisos... [more]
A0A3Q3Q3H5_MONAL1.260e-5040.47Solute carrier family 25 member 40 n=11 Tax=Percom... [more]
UPI0018D800CA1.320e-5040.34solute carrier family 25 member 40-like n=1 Tax=Pa... [more]
A0A1S3RAF3_SALSA2.590e-5042.05solute carrier family 25 member 39-like isoform X4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6292contigF-serratus_M_contig6292:5504..6892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue5.2e-98
Seed eggNOG ortholog2880.D7G8B5
Preferred nameMTM1
KEGG koko:K11982,ko:K15119
KEGG TC2.A.29
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005384,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006828,GO:0006839,GO:0006950,GO:0008144,GO:0008150,GO:0008324,GO:0009635,GO:0009636,GO:0010033,GO:0015075,GO:0015318,GO:0015711,GO:0015748,GO:0015850,GO:0015893,GO:0016020,GO:0016021,GO:0016530,GO:0019842,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0030170,GO:0031090,GO:0031224,GO:0031919,GO:0031921,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048037,GO:0050662,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051234,GO:0055085,GO:0070279,GO:0071421,GO:0071702,GO:0071705,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:0140104,GO:1901363,GO:1901562,GO:1990540,GO:1990542
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0761@1,KOG0761@2759
EC2.3.2.27
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko04121,ko04131
Exons2
Model size906
Cds size906
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931942.759878-CDS-F-serratus_M_contig6292:5503..61821622931942.759878-CDS-F-serratus_M_contig6292:5503..6182Fucus serratus maleCDSF-serratus_M_contig6292 5504..6182 +
1690964068.570189-CDS-F-serratus_M_contig6292:5503..61821690964068.570189-CDS-F-serratus_M_contig6292:5503..6182Fucus serratus maleCDSF-serratus_M_contig6292 5504..6182 +
1622931942.8063753-CDS-F-serratus_M_contig6292:6665..68921622931942.8063753-CDS-F-serratus_M_contig6292:6665..6892Fucus serratus maleCDSF-serratus_M_contig6292 6666..6892 +
1690964068.5851948-CDS-F-serratus_M_contig6292:6665..68921690964068.5851948-CDS-F-serratus_M_contig6292:6665..6892Fucus serratus maleCDSF-serratus_M_contig6292 6666..6892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6292.17136.1prot_F-serratus_M_contig6292.17136.1Fucus serratus malepolypeptideF-serratus_M_contig6292 5504..6892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6292.17136.1

>prot_F-serratus_M_contig6292.17136.1 ID=prot_F-serratus_M_contig6292.17136.1|Name=mRNA_F-serratus_M_contig6292.17136.1|organism=Fucus serratus male|type=polypeptide|length=302bp
SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLDR
AGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGA
IRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLG
YENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAIS
GVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMR
NIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAERARQ
Q*
back to top

mRNA from alignment at F-serratus_M_contig6292:5504..6892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6292.17136.1 ID=mRNA_F-serratus_M_contig6292.17136.1|Name=mRNA_F-serratus_M_contig6292.17136.1|organism=Fucus serratus male|type=mRNA|length=1389bp|location=Sequence derived from alignment at F-serratus_M_contig6292:5504..6892+ (Fucus serratus male)
TCGGGCACCTGGGCGGCCCTACGACACATTGCGAAGTGGGAGGGCCCACG CGGGCTATACCGAGGCATTGAGGTCTCCCTCGTCATGGCGGTGCCCTCCA TCGTGCTTTACTACACCGTGTACGACGACATCTTGGGGAGACTGGATAGG GCCGGCGTGGGCAGCGTCCTCGGCCCGATGACTTCTGGTGCCATCGCCCG CGTGCTGGCGACGGTGTGCATGGCACCGCTGGAGCTAGTGCGGACGCGTG TCCAGGCACAGAAGGCGACGACAGCGGTGGAGGAAGAGGTCGTCGGAGCG ATTAGGTCAAGACTGTCGGATTTCCCTATATTTTCCGTAGCGAAAGAGGT GTCGATGGTTGTACGCAAGGAGGGAGCGCTCGCTTTGTGGCGCGGGGTGG GGACGACGATGTGGCGAGACGTGCCTTTTTCGATGGTGTACTGGCTGGGC TACGAGAACCTCAAGGCGGGGCTGGGGTGCGATCGGCGAAGCGCGGGGAG AGAAGGGGGTGCAAATTTGGGGGGAGCCGGGCAGAGCCGGGCAGACCAGA GAGGGTCCGCGGATTTCTTGTTGAGATCTTTTACCGCGGGCGCGATCTCC GGAGTCGTGGCGAGCCTGCTCACCCACCCTTTCGACGTGGTGAAGACTCA GCTGCAAGTGGTAGTCAAGGAGGTCGAAGGTAACAACTAACTCACTCATT GCCCGTGTGTACATCATACAGTGGGATTGTGGGGGCGGGGGGGAGGCATC CTCTCTATCTCGCTGTCAGCTACGTTTGATAGATCTTTCGCGACGGAAAT GAAGCGCACGGTTATAGAAGAGTCCATTTTCTACATGCGGTCGCAACAGC ATTCTAGAAATAGAGCTCGATGAGCAATCGGTTCCACCGCGCGCGACTAT ATTCCCTGACCGGTAAAAACAAGGATTCTGGAAACAATTGCGCCATATAC TCCTGGCGCAGAGCCAAGCCCGCACTGTTGACACATCGCGCGTTTACGGT GACCGTATCGGATAAAAAACCGTCATTTGGCATAACAGGCTCTTGCGGAC GGGGGGGGTGGAGGGTGTTCCAGAATCAGGCTCAGTCTACACACTCTCTA CCACGCCCTAACCTCGCGCGCGATTGGAACCTTTCCTTGCCTGCGTGCTT GTACAGGTCGAGGAAGCTGCGAGCATCGACCCCCGCCACCCCGACAGCCC CGCCGGGTGCCGGGCACGTTCGAAGTTATGCGTAACATCGTCGAGAGCCG AGGGATAGCGGGGCTCTACACTGGGGCGTTGCCTCGCGTGGGGAAGGTGG CACCGGCTTGCGCCATCATGATTTTCAGCTACGAGGCGGGGAAGCGCTTT TTTGCGGAACGTAACGCGGAGCGTGCGCGCCAACAGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6292:5504..6892+

>mRNA_F-serratus_M_contig6292.17136.1 ID=mRNA_F-serratus_M_contig6292.17136.1|Name=mRNA_F-serratus_M_contig6292.17136.1|organism=Fucus serratus male|type=CDS|length=1812bp|location=Sequence derived from alignment at F-serratus_M_contig6292:5504..6892+ (Fucus serratus male)
TCGGGCACCTGGGCGGCCCTACGACACATTGCGAAGTGGGAGGGCCCACG
CGGGCTATACCGAGGCATTGAGGTCTCCCTCGTCATGGCGGTGCCCTCCA
TCGTGCTTTACTACACCGTGTACGACGACATCTTGGGGAGACTGGATAGG
GCCGGCGTGGGCAGCGTCCTCGGCCCGATGACTTCTGGTGCCATCGCCCG
CGTGCTGGCGACGGTGTGCATGGCACCGCTGGAGCTAGTGCGGACGCGTG
TCCAGGCACAGAAGGCGACGACAGCGGTGGAGGAAGAGGTCGTCGGAGCG
ATTAGGTCAAGACTGTCGGATTTCCCTATATTTTCCGTAGCGAAAGAGGT
GTCGATGGTTGTACGCAAGGAGGGAGCGCTCGCTTTGTGGCGCGGGGTGG
GGACGACGATGTGGCGAGACGTGCCTTTTTCGATGGTGTACTGGCTGGGC
TACGAGAACCTCAAGGCGGGGCTGGGGTGCGATCGGCGAAGCGCGGGGAG
AGAAGGGGGTGCAAATTTGGGGGGAGCCGGGCAGAGCCGGGCAGACCAGA
GAGGGTCCGCGGATTTCTTGTTGAGATCTTTTACCGCGGGCGCGATCTCC
GGAGTCGTGGCGAGCCTGCTCACCCACCCTTTCGACGTGGTGAAGACTCA
GCTGCAAGTGGTAGTCAAGGAGGTCGAAGTCGGGCACCTGGGCGGCCCTA
CGACACATTGCGAAGTGGGAGGGCCCACGCGGGCTATACCGAGGCATTGA
GGTCTCCCTCGTCATGGCGGTGCCCTCCATCGTGCTTTACTACACCGTGT
ACGACGACATCTTGGGGAGACTGGATAGGGCCGGCGTGGGCAGCGTCCTC
GGCCCGATGACTTCTGGTGCCATCGCCCGCGTGCTGGCGACGGTGTGCAT
GGCACCGCTGGAGCTAGTGCGGACGCGTGTCCAGGCACAGAAGGCGACGA
CAGCGGTGGAGGAAGAGGTCGTCGGAGCGATTAGGTCAAGACTGTCGGAT
TTCCCTATATTTTCCGTAGCGAAAGAGGTGTCGATGGTTGTACGCAAGGA
GGGAGCGCTCGCTTTGTGGCGCGGGGTGGGGACGACGATGTGGCGAGACG
TGCCTTTTTCGATGGTGTACTGGCTGGGCTACGAGAACCTCAAGGCGGGG
CTGGGGTGCGATCGGCGAAGCGCGGGGAGAGAAGGGGGTGCAAATTTGGG
GGGAGCCGGGCAGAGCCGGGCAGACCAGAGAGGGTCCGCGGATTTCTTGT
TGAGATCTTTTACCGCGGGCGCGATCTCCGGAGTCGTGGCGAGCCTGCTC
ACCCACCCTTTCGACGTGGTGAAGACTCAGCTGCAAGTGGTAGTCAAGGA
GGTCGAAGGAAGCTGCGAGCATCGACCCCCGCCACCCCGACAGCCCCGCC
GGGTGCCGGGCACGTTCGAAGTTATGCGTAACATCGTCGAGAGCCGAGGG
ATAGCGGGGCTCTACACTGGGGCGTTGCCTCGCGTGGGGAAGGTGGCACC
GGCTTGCGCCATCATGATTTTCAGCTACGAGGCGGGGAAGCGCTTTTTTG
CGGAACGTAACGCGGAGCGTGCGCGCCAACAGTGAGAAGCTGCGAGCATC
GACCCCCGCCACCCCGACAGCCCCGCCGGGTGCCGGGCACGTTCGAAGTT
ATGCGTAACATCGTCGAGAGCCGAGGGATAGCGGGGCTCTACACTGGGGC
GTTGCCTCGCGTGGGGAAGGTGGCACCGGCTTGCGCCATCATGATTTTCA
GCTACGAGGCGGGGAAGCGCTTTTTTGCGGAACGTAACGCGGAGCGTGCG
CGCCAACAGTGA
back to top