mRNA_F-serratus_M_contig6284.17132.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6284.17132.1
Unique NamemRNA_F-serratus_M_contig6284.17132.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A803Q615_CANSA (Integrase catalytic domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q615_CANSA)

HSP 1 Score: 80.1 bits (196), Expect = 2.850e-15
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKK--QVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+A+GF Q +GI Y E+  P     +IR+VL +    GW  RQLD++ A+L   +EEK+++++ EG+ID  K   V LL K+++G+  A   W +     L +  F
Sbjct:  359 KARLVAKGFNQRAGIDYSETFSPVVKASTIRIVLTIAVSKGWTIRQLDINNAFLNGKLEEKVYMQQPEGFIDPNKPNHVCLLNKSLYGLKQAPRAWFDKLKSTLASWKF 467          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H7HK67_9AGAM (Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7HK67_9AGAM)

HSP 1 Score: 79.0 bits (193), Expect = 6.890e-15
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+AQGF Q  GI ++++  P     SIRM++ +     W  +QLDV++AYL A V++ ++++++  + D   +V  LK++++G+  AG +W + +  KL+A  +
Sbjct:  313 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRMLVSIANQYNWDIQQLDVNLAYLHAEVDKDLYMQQIPYFSDGTNKVLKLKQSIYGLKQAGQMWNKLYNTKLKAIGY 419          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8NYI5_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NYI5_9AGAM)

HSP 1 Score: 76.6 bits (187), Expect = 4.690e-14
Identity = 36/107 (33.64%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+AQGF Q  GI ++++  P     SIR ++ +     W  RQL+V+ AYL A V+E ++++++  + D   +V  LK++++G+  AG +W + +  KL+A  +
Sbjct:  414 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYDWDIRQLNVNSAYLHAEVDEDLYMQQIPYFSDGTNKVLKLKRSIYGLKQAGRMWNKLYNTKLKAIGY 520          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A5N6PGN7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PGN7_9ASTR)

HSP 1 Score: 75.9 bits (185), Expect = 8.770e-14
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKK--QVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+A+GF Q +G+ Y E+  P     +IR+VL M    GW  RQLDV  A+L  +++E +++++  G++D  K   V LL K+++G+  A   W       L    F
Sbjct:  211 KARLVAKGFNQQAGLDYHETFSPVVKPTTIRVVLSMAVTHGWPLRQLDVQNAFLNGDLQETVYLRQPPGFVDPAKPNHVCLLHKSLYGLKQAPRAWFHRLSGVLYTLGF 319          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8SUH8_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8SUH8_9AGAM)

HSP 1 Score: 74.7 bits (182), Expect = 2.260e-13
Identity = 35/104 (33.65%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEA 312
            K RL+AQGF Q  GI ++++  P     SIR ++ +     W  +QLDV+ AYL A V++ ++++++  + D   +V  LK++++G+  AG +W + +  KL+A
Sbjct:  413 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYDWDIQQLDVNSAYLHAEVDKDLYMQQIPYFSDGTNKVLKLKRSIYGLKQAGRMWNKLYDTKLKA 516          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8NX57_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NX57_9AGAM)

HSP 1 Score: 74.7 bits (182), Expect = 2.340e-13
Identity = 34/107 (31.78%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+AQGF Q  GI ++++  P     SIR ++ +     W  RQL+V+ AYL A V+++++++++  + D   +V  LK++++G+  AG +W + +  KL++  +
Sbjct: 1107 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRSLVSLANNNNWDIRQLNVNAAYLHAEVDKELYMRQIPYFEDGTNRVLKLKRSIYGLKQAGRMWNKLYDTKLQSIGY 1213          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8SZ67_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8SZ67_9AGAM)

HSP 1 Score: 73.9 bits (180), Expect = 4.310e-13
Identity = 34/107 (31.78%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+AQGF Q  GI ++++  P     SIR ++ +     W  +QL+V+ AYL A V++ ++++++  + D   +V  LK++++G+  AG +W + +  KL+A  +
Sbjct:  711 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYNWDIQQLNVNSAYLHAEVDKDLYMQQIPYFSDGTNKVLKLKRSIYGLKQAGRMWNKLYNTKLKAIGY 817          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: UPI00142E4BCA (uncharacterized protein LOC103872007 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E4BCA)

HSP 1 Score: 73.9 bits (180), Expect = 4.350e-13
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKK--QVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+A+GF Q  GI + E+  P     SIR+V+G+     W  +QLDV+ A+L+ +++E++++ +  G+ID  K   V  L+KA++G+  A   W       L +  F
Sbjct:  942 KSRLVAKGFHQRPGIDFHETFSPVIKHASIRLVIGLAVAQNWALKQLDVNNAFLQGDLDEEVYMTQPPGFIDKDKPDHVCRLRKAIYGLKQAPRAWYNALRDALISVGF 1050          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A803PB30_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PB30_CANSA)

HSP 1 Score: 73.6 bits (179), Expect = 5.500e-13
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQ--VGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+A+GF Q +G  ++E+  P    ++IR+VL +    GW  RQLDV+ A+L   ++E+I++++  G++  +    V  L KA++G+  A   W E     L +  F
Sbjct:   53 KARLVAKGFHQQAGFDFDETFSPVVKPITIRVVLTIAVTRGWSIRQLDVNNAFLNGELQEEIYMQQPPGFVSEEHPDYVCKLNKAIYGLKQAPRAWFEKLSTALISMGF 161          
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H7I0P8_9AGAM (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7I0P8_9AGAM)

HSP 1 Score: 72.8 bits (177), Expect = 1.070e-12
Identity = 34/107 (31.78%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
            K RL+AQGF Q  GI ++++  P     SIR ++ +     W  RQL+V+ AYL A V++ ++++++  + +   +V  LK++++G+  AG +W + +  KL+A  +
Sbjct:  148 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYDWDIRQLNVNSAYLHAEVDKDLYMQQIPYFSNGTNKVLKLKRSIYGLKQAGRMWNKLYDTKLKAIGY 254          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A803Q615_CANSA2.850e-1537.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7HK67_9AGAM6.890e-1533.64Reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A8H8NYI5_9AGAM4.690e-1433.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6PGN7_9ASTR8.770e-1434.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8SUH8_9AGAM2.260e-1333.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H8NX57_9AGAM2.340e-1331.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H8SZ67_9AGAM4.310e-1331.78Retrovirus-related Pol polyprotein from transposon... [more]
UPI00142E4BCA4.350e-1333.94uncharacterized protein LOC103872007 isoform X1 n=... [more]
A0A803PB30_CANSA5.500e-1333.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7I0P8_9AGAM1.070e-1231.78Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6284contigF-serratus_M_contig6284:18926..19252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.5
Seed ortholog evalue5.4e-13
Seed eggNOG ortholog4572.TRIUR3_12450-P1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931942.5188046-CDS-F-serratus_M_contig6284:18925..192521622931942.5188046-CDS-F-serratus_M_contig6284:18925..19252Fucus serratus maleCDSF-serratus_M_contig6284 18926..19252 -
1690964068.4810302-CDS-F-serratus_M_contig6284:18925..192521690964068.4810302-CDS-F-serratus_M_contig6284:18925..19252Fucus serratus maleCDSF-serratus_M_contig6284 18926..19252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6284.17132.1prot_F-serratus_M_contig6284.17132.1Fucus serratus malepolypeptideF-serratus_M_contig6284 18926..19252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6284.17132.1

>prot_F-serratus_M_contig6284.17132.1 ID=prot_F-serratus_M_contig6284.17132.1|Name=mRNA_F-serratus_M_contig6284.17132.1|organism=Fucus serratus male|type=polypeptide|length=109bp
KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVD
MAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGV
KLEAKAFE*
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mRNA from alignment at F-serratus_M_contig6284:18926..19252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6284.17132.1 ID=mRNA_F-serratus_M_contig6284.17132.1|Name=mRNA_F-serratus_M_contig6284.17132.1|organism=Fucus serratus male|type=mRNA|length=327bp|location=Sequence derived from alignment at F-serratus_M_contig6284:18926..19252- (Fucus serratus male)
AAGTGCCGCCTTATAGCACAGGGGTTCCGACAGGCAAGTGGTATACATTA CGAGGAGTCGTCTTGCCCGGCTCCAGCGCAGGTGAGTATCCGGATGGTAC TCGGAATGATCGCGATTCTTGGCTGGGGGGCACGGCAACTCGACGTAGAT ATGGCCTATCTTGAAGCCAACGTGGAAGAAAAGATACACATCAAACGTCT GGAAGGGTACATCGATTCCAAGAAGCAAGTCGGACTATTGAAGAAAGCCA TGCACGGCATTGTGCACGCCGGTCTGCTGTGGTTGGAAACGTTCGGAGTC AAGCTGGAGGCGAAGGCCTTCGAGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6284:18926..19252-

>mRNA_F-serratus_M_contig6284.17132.1 ID=mRNA_F-serratus_M_contig6284.17132.1|Name=mRNA_F-serratus_M_contig6284.17132.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig6284:18926..19252- (Fucus serratus male)
AAGTGCCGCCTTATAGCACAGGGGTTCCGACAGGCAAGTGGTATACATTA
CGAGGAGTCGTCTTGCCCGGCTCCAGCGCAGGTGAGTATCCGGATGGTAC
TCGGAATGATCGCGATTCTTGGCTGGGGGGCACGGCAACTCGACGTAGAT
ATGGCCTATCTTGAAGCCAACGTGGAAGAAAAGATACACATCAAACGTCT
GGAAGGGTACATCGATTCCAAGAAGCAAGTCGGACTATTGAAGAAAGCCA
TGCACGGCATTGTGCACGCCGGTCTGCTGTGGTTGGAAACGTTCGGAGTC
AAGCTGGAGGCGAAGGCCTTCGAGTGAAAGTGCCGCCTTATAGCACAGGG
GTTCCGACAGGCAAGTGGTATACATTACGAGGAGTCGTCTTGCCCGGCTC
CAGCGCAGGTGAGTATCCGGATGGTACTCGGAATGATCGCGATTCTTGGC
TGGGGGGCACGGCAACTCGACGTAGATATGGCCTATCTTGAAGCCAACGT
GGAAGAAAAGATACACATCAAACGTCTGGAAGGGTACATCGATTCCAAGA
AGCAAGTCGGACTATTGAAGAAAGCCATGCACGGCATTGTGCACGCCGGT
CTGCTGTGGTTGGAAACGTTCGGAGTCAAGCTGGAGGCGAAGGCCTTCGA
GTGA
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