mRNA_F-serratus_M_contig6284.17132.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A803Q615_CANSA (Integrase catalytic domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q615_CANSA) HSP 1 Score: 80.1 bits (196), Expect = 2.850e-15 Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKK--QVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+A+GF Q +GI Y E+ P +IR+VL + GW RQLD++ A+L +EEK+++++ EG+ID K V LL K+++G+ A W + L + F
Sbjct: 359 KARLVAKGFNQRAGIDYSETFSPVVKASTIRIVLTIAVSKGWTIRQLDINNAFLNGKLEEKVYMQQPEGFIDPNKPNHVCLLNKSLYGLKQAPRAWFDKLKSTLASWKF 467
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H7HK67_9AGAM (Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7HK67_9AGAM) HSP 1 Score: 79.0 bits (193), Expect = 6.890e-15 Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+AQGF Q GI ++++ P SIRM++ + W +QLDV++AYL A V++ ++++++ + D +V LK++++G+ AG +W + + KL+A +
Sbjct: 313 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRMLVSIANQYNWDIQQLDVNLAYLHAEVDKDLYMQQIPYFSDGTNKVLKLKQSIYGLKQAGQMWNKLYNTKLKAIGY 419
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8NYI5_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NYI5_9AGAM) HSP 1 Score: 76.6 bits (187), Expect = 4.690e-14 Identity = 36/107 (33.64%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+AQGF Q GI ++++ P SIR ++ + W RQL+V+ AYL A V+E ++++++ + D +V LK++++G+ AG +W + + KL+A +
Sbjct: 414 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYDWDIRQLNVNSAYLHAEVDEDLYMQQIPYFSDGTNKVLKLKRSIYGLKQAGRMWNKLYNTKLKAIGY 520
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A5N6PGN7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PGN7_9ASTR) HSP 1 Score: 75.9 bits (185), Expect = 8.770e-14 Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKK--QVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+A+GF Q +G+ Y E+ P +IR+VL M GW RQLDV A+L +++E +++++ G++D K V LL K+++G+ A W L F
Sbjct: 211 KARLVAKGFNQQAGLDYHETFSPVVKPTTIRVVLSMAVTHGWPLRQLDVQNAFLNGDLQETVYLRQPPGFVDPAKPNHVCLLHKSLYGLKQAPRAWFHRLSGVLYTLGF 319
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8SUH8_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8SUH8_9AGAM) HSP 1 Score: 74.7 bits (182), Expect = 2.260e-13 Identity = 35/104 (33.65%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEA 312
K RL+AQGF Q GI ++++ P SIR ++ + W +QLDV+ AYL A V++ ++++++ + D +V LK++++G+ AG +W + + KL+A
Sbjct: 413 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYDWDIQQLDVNSAYLHAEVDKDLYMQQIPYFSDGTNKVLKLKRSIYGLKQAGRMWNKLYDTKLKA 516
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8NX57_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NX57_9AGAM) HSP 1 Score: 74.7 bits (182), Expect = 2.340e-13 Identity = 34/107 (31.78%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+AQGF Q GI ++++ P SIR ++ + W RQL+V+ AYL A V+++++++++ + D +V LK++++G+ AG +W + + KL++ +
Sbjct: 1107 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRSLVSLANNNNWDIRQLNVNAAYLHAEVDKELYMRQIPYFEDGTNRVLKLKRSIYGLKQAGRMWNKLYDTKLQSIGY 1213
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H8SZ67_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8SZ67_9AGAM) HSP 1 Score: 73.9 bits (180), Expect = 4.310e-13 Identity = 34/107 (31.78%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+AQGF Q GI ++++ P SIR ++ + W +QL+V+ AYL A V++ ++++++ + D +V LK++++G+ AG +W + + KL+A +
Sbjct: 711 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYNWDIQQLNVNSAYLHAEVDKDLYMQQIPYFSDGTNKVLKLKRSIYGLKQAGRMWNKLYNTKLKAIGY 817
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: UPI00142E4BCA (uncharacterized protein LOC103872007 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E4BCA) HSP 1 Score: 73.9 bits (180), Expect = 4.350e-13 Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKK--QVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+A+GF Q GI + E+ P SIR+V+G+ W +QLDV+ A+L+ +++E++++ + G+ID K V L+KA++G+ A W L + F
Sbjct: 942 KSRLVAKGFHQRPGIDFHETFSPVIKHASIRLVIGLAVAQNWALKQLDVNNAFLQGDLDEEVYMTQPPGFIDKDKPDHVCRLRKAIYGLKQAPRAWYNALRDALISVGF 1050
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A803PB30_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PB30_CANSA) HSP 1 Score: 73.6 bits (179), Expect = 5.500e-13 Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQ--VGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+A+GF Q +G ++E+ P ++IR+VL + GW RQLDV+ A+L ++E+I++++ G++ + V L KA++G+ A W E L + F
Sbjct: 53 KARLVAKGFHQQAGFDFDETFSPVVKPITIRVVLTIAVTRGWSIRQLDVNNAFLNGELQEEIYMQQPPGFVSEEHPDYVCKLNKAIYGLKQAPRAWFEKLSTALISMGF 161
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Match: A0A8H7I0P8_9AGAM (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7I0P8_9AGAM) HSP 1 Score: 72.8 bits (177), Expect = 1.070e-12 Identity = 34/107 (31.78%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDMAYLEANVEEKIHIKRLEGYIDSKKQVGLLKKAMHGIVHAGLLWLETFGVKLEAKAF 321
K RL+AQGF Q GI ++++ P SIR ++ + W RQL+V+ AYL A V++ ++++++ + + +V LK++++G+ AG +W + + KL+A +
Sbjct: 148 KARLVAQGFSQQPGIDFDKTFAPVVRLDSIRTLVSIANQYDWDIRQLNVNSAYLHAEVDKDLYMQQIPYFSNGTNKVLKLKRSIYGLKQAGRMWNKLYDTKLKAIGY 254 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6284.17132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6284.17132.1 >prot_F-serratus_M_contig6284.17132.1 ID=prot_F-serratus_M_contig6284.17132.1|Name=mRNA_F-serratus_M_contig6284.17132.1|organism=Fucus serratus male|type=polypeptide|length=109bp KCRLIAQGFRQASGIHYEESSCPAPAQVSIRMVLGMIAILGWGARQLDVDback to top mRNA from alignment at F-serratus_M_contig6284:18926..19252- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6284.17132.1 ID=mRNA_F-serratus_M_contig6284.17132.1|Name=mRNA_F-serratus_M_contig6284.17132.1|organism=Fucus serratus male|type=mRNA|length=327bp|location=Sequence derived from alignment at F-serratus_M_contig6284:18926..19252- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6284:18926..19252- >mRNA_F-serratus_M_contig6284.17132.1 ID=mRNA_F-serratus_M_contig6284.17132.1|Name=mRNA_F-serratus_M_contig6284.17132.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig6284:18926..19252- (Fucus serratus male)back to top |