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Homology
BLAST of mRNA_F-serratus_M_contig6282.17131.1 vs. uniprot
Match: D7FMH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH1_ECTSI) HSP 1 Score: 230 bits (587), Expect = 4.170e-68 Identity = 154/254 (60.63%), Postives = 182/254 (71.65%), Query Frame = 2
Query: 155 IDDQETDMDEASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRKVIRRSRQDLVHFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMEREAQKHRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYRGRGPNEVGPAASAXXXXXXXXXXXXXLAIVDDSEVVETVAAMAAADASALA-----------TVAGSELGGGNVCRACGGPRFNRTVCAKCGAHSSMW 883
IDDQE DMD +S RE R EALRR E+ L++A R + RAVRRE+MRWAVRDVRR VI+RSR+DL F +LARA+RPLEV+ TLSYE RRD+ERDEEAEVR MER+A+K RF +K+ GEG+ +REVYDAVIS +RDI++ +TF+ARRAK DYRGRGP+EVGPAAS XXXXXXXXXXXXX T +ELGGG VCRACGGPRF RTVCAKCGA+++ W
Sbjct: 184 IDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRREKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRRMERDARKERFVELKKNGEGSLAVREVYDAVISGVRDILATATFEARRAKHDYRGRGPDEVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSW 437
BLAST of mRNA_F-serratus_M_contig6282.17131.1 vs. uniprot
Match: A0A6H5KAU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU5_9PHAE) HSP 1 Score: 149 bits (375), Expect = 5.530e-39 Identity = 122/250 (48.80%), Postives = 143/250 (57.20%), Query Frame = 2
Query: 167 ETDMDEASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRKVIRRSRQDLVHFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMEREAQKHRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYRGRGPNEVGPAASAXXXXXXXXXXXXXLAIVDDSEVVETVAAMAAADASALATVAGSELGGGNVCRACGGPRFNRTVCAKCGAHSSMWLDGAVLNAGGD 916
E DMD +S RE R EALRR E+ L++A R + RAVR E+MRWAVRDVRR VI+RSR+DL F +LARA+RPLEV+ TLSYE RRD+ERDEEAEVR MER+A+K R +REVYDAV+ XXXXXXXXXXXXX T +ELGGG VCRACGGPRF RTVCAKCGA+++ W G V + G D
Sbjct: 33 EADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRLEKMRWAVRDVRRNVIKRSRKDLQRFRELARAERPLEVKQTLSYEKRRDQERDEEAEVRQMERDARKERLA-----------VREVYDAVVGPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------TTGMAELGGGRVCRACGGPRFGRTVCAKCGANANSWR-GEVDSGGED 252
BLAST of mRNA_F-serratus_M_contig6282.17131.1 vs. uniprot
Match: A0A7S2F6R7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F6R7_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.110e-18 Identity = 63/156 (40.38%), Postives = 98/156 (62.82%), Query Frame = 2
Query: 155 IDDQETDMDEASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRKVIRRSRQDLVHFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMEREAQKHRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYR 622
++D E D+D+AS RE D +R EL++ A H R VR ER +WAV DVR+KVIRR+R DL + + A+ RP E T++Y+ ++DEE ++MM+ +AQ+ ++ ++ +GEGNQ IR+ YD+VI+ D++ + + R KTD R
Sbjct: 211 LEDTEADLDDASTREVDELGLRQRMELELCHADAHAHWLRRVRTERCKWAVEDVRKKVIRRARVDLAQYKEAAQQYRPPENLSTVTYKKGHHWKQDEEHIIQMMDNKAQREKYAHLRTEGEGNQTIRQTYDSVIAGCFDLLKNHSHELRHMKTDLR 366
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Model size | 1108 |
| Cds size | 888 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931942.305703-UTR-F-serratus_M_contig6282:23203..23237 | 1622931942.305703-UTR-F-serratus_M_contig6282:23203..23237 | Fucus serratus male | UTR | F-serratus_M_contig6282 23204..23237 + |
| 1690964068.385874-UTR-F-serratus_M_contig6282:23203..23237 | 1690964068.385874-UTR-F-serratus_M_contig6282:23203..23237 | Fucus serratus male | UTR | F-serratus_M_contig6282 23204..23237 + |
| 1622931942.4635065-UTR-F-serratus_M_contig6282:26535..26721 | 1622931942.4635065-UTR-F-serratus_M_contig6282:26535..26721 | Fucus serratus male | UTR | F-serratus_M_contig6282 26536..26721 + |
| 1690964068.4707184-UTR-F-serratus_M_contig6282:26535..26721 | 1690964068.4707184-UTR-F-serratus_M_contig6282:26535..26721 | Fucus serratus male | UTR | F-serratus_M_contig6282 26536..26721 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931942.3255494-CDS-F-serratus_M_contig6282:23237..23357 | 1622931942.3255494-CDS-F-serratus_M_contig6282:23237..23357 | Fucus serratus male | CDS | F-serratus_M_contig6282 23238..23357 + |
| 1690964068.4020844-CDS-F-serratus_M_contig6282:23237..23357 | 1690964068.4020844-CDS-F-serratus_M_contig6282:23237..23357 | Fucus serratus male | CDS | F-serratus_M_contig6282 23238..23357 + |
| 1622931942.341073-CDS-F-serratus_M_contig6282:23799..23949 | 1622931942.341073-CDS-F-serratus_M_contig6282:23799..23949 | Fucus serratus male | CDS | F-serratus_M_contig6282 23800..23949 + |
| 1690964068.4117253-CDS-F-serratus_M_contig6282:23799..23949 | 1690964068.4117253-CDS-F-serratus_M_contig6282:23799..23949 | Fucus serratus male | CDS | F-serratus_M_contig6282 23800..23949 + |
| 1622931942.3580043-CDS-F-serratus_M_contig6282:24398..24494 | 1622931942.3580043-CDS-F-serratus_M_contig6282:24398..24494 | Fucus serratus male | CDS | F-serratus_M_contig6282 24399..24494 + |
| 1690964068.420633-CDS-F-serratus_M_contig6282:24398..24494 | 1690964068.420633-CDS-F-serratus_M_contig6282:24398..24494 | Fucus serratus male | CDS | F-serratus_M_contig6282 24399..24494 + |
| 1622931942.3779716-CDS-F-serratus_M_contig6282:24772..24861 | 1622931942.3779716-CDS-F-serratus_M_contig6282:24772..24861 | Fucus serratus male | CDS | F-serratus_M_contig6282 24773..24861 + |
| 1690964068.4298022-CDS-F-serratus_M_contig6282:24772..24861 | 1690964068.4298022-CDS-F-serratus_M_contig6282:24772..24861 | Fucus serratus male | CDS | F-serratus_M_contig6282 24773..24861 + |
| 1622931942.3959177-CDS-F-serratus_M_contig6282:25135..25199 | 1622931942.3959177-CDS-F-serratus_M_contig6282:25135..25199 | Fucus serratus male | CDS | F-serratus_M_contig6282 25136..25199 + |
| 1690964068.439139-CDS-F-serratus_M_contig6282:25135..25199 | 1690964068.439139-CDS-F-serratus_M_contig6282:25135..25199 | Fucus serratus male | CDS | F-serratus_M_contig6282 25136..25199 + |
| 1622931942.420972-CDS-F-serratus_M_contig6282:25449..25536 | 1622931942.420972-CDS-F-serratus_M_contig6282:25449..25536 | Fucus serratus male | CDS | F-serratus_M_contig6282 25450..25536 + |
| 1690964068.449199-CDS-F-serratus_M_contig6282:25449..25536 | 1690964068.449199-CDS-F-serratus_M_contig6282:25449..25536 | Fucus serratus male | CDS | F-serratus_M_contig6282 25450..25536 + |
| 1622931942.438587-CDS-F-serratus_M_contig6282:26253..26535 | 1622931942.438587-CDS-F-serratus_M_contig6282:26253..26535 | Fucus serratus male | CDS | F-serratus_M_contig6282 26254..26535 + |
| 1690964068.459982-CDS-F-serratus_M_contig6282:26253..26535 | 1690964068.459982-CDS-F-serratus_M_contig6282:26253..26535 | Fucus serratus male | CDS | F-serratus_M_contig6282 26254..26535 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6282.17131.1 >prot_F-serratus_M_contig6282.17131.1 ID=prot_F-serratus_M_contig6282.17131.1|Name=mRNA_F-serratus_M_contig6282.17131.1|organism=Fucus serratus male|type=polypeptide|length=296bp
MSIMDMNVAHVYNSTTVLKMNFQAITSSNIHCEYEYLGNAIDDQETDMDE ASMREFDRTEALRRSELKVRLDRAVRHKERAVRRERMRWAVRDVRRKVIR RSRQDLVHFAKLARAKRPLEVEHTLSYEVRRDRERDEEAEVRMMEREAQK HRFEGVKEKGEGNQDIREVYDAVISSIRDIISKSTFDARRAKTDYRGRGP NEVGPAASAAATAAATTARKAALAIVDDSEVVETVAAMAAADASALATVA GSELGGGNVCRACGGPRFNRTVCAKCGAHSSMWLDGAVLNAGGDR* back to topmRNA from alignment at F-serratus_M_contig6282:23204..26721+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig6282.17131.1 ID=mRNA_F-serratus_M_contig6282.17131.1|Name=mRNA_F-serratus_M_contig6282.17131.1|organism=Fucus serratus male|type=mRNA|length=3518bp|location=Sequence derived from alignment at F-serratus_M_contig6282:23204..26721+ (Fucus serratus male) GGTGGTGGAGCGAATACGCGGAAGAGTCGAGCGGATGTCCATCATGGACA
TGAATGTCGCCCATGTTTATAACAGCACAACTGTCCTGAAGATGAACTTC
CAAGCAATAACCTCATCCAACATTCATTGTGAATACGAATATTTGGGCAA
TGCGGTACGACCGACTTGTCATCCTGAGTTCTGAGAGTGATTGTTATTAC
GACCGGTCGATCCACGATTCATCCTGAACGCGACTATCACGAAGAAGATA
CCTGTGCAATAATCTGACCGACTTCTCATACTTCATCACGGAAACGGGTA
GAGCGACCTCAAAAATATTGAACACGATTAAATTTATTCGTTTTGTTCGT
TATAGGGGGCGTGGAATTTTTCTGTATGTCTTTCTGGGACTTCGACGGGA
GACACAGCCGTGCGCTATTTCAAAATTAGTGTAGAGTGACGTTCTATTTG
GCCGCTTTACGGTAAAGTTTGGAACATAAAAGTCCAGCCTTGGTTTATAA
CAAAAACTTCAAAGTGTGGATTACATGCCTGGTACTAAATTACGCTAGCG
TGTGGGAAATATAAGTTTCTTGCCCATTATTCCTAAATATATGTAGATCG
ACGACCAAGAGACCGACATGGATGAGGCGTCGATGAGGGAGTTTGACCGC
ACGGAGGCGTTACGCAGGAGTGAGTTAAAAGTACGTCTCGATCGAGCAGT
GAGGCACAAAGAGAGGGCTGTTCGGCGAGAACGCATGCGGTGGGCGGTGA
GTCCAGTCAGGCGGAAGTTATCACGAGACGGTACGGCAATAGAGACAGAC
CCCAGAAAAGACAACACGCTACGTACAAGAACCCACTCGATCACGGACTT
GTTTGGGTAGCTGTACTTCATTACTTCGAAGTGGTATTACAGTCGTATCG
TGGAATTTCATATACATTATTGCTGAAGATAGAAAGGAAACAATTCCTTC
GATGGGAAGAGTCTTGTCGCTAGTGCAAACATGGGCTTCCAACATAATAC
ACAAATGGCTCCTCGGGACGAACAACGACGTTCGTTTATTGAAGCCCCTG
TAAAAACCCATGTATATATTTATGTTAAAGGTTTATATTTTCTGTACGCC
TTACCTACGTTCCCCGCCATTGTAACCGTCAATCGATTGCAACCCATGGT
GATGTGGAATTGTAAAACCTGGATGGATCGTTACTATTACGACAGGTGCG
GGACGTTCGCCGCAAGGTGATCAGGCGTTCTCGGCAAGACCTGGTGCACT
TTGCGAAACTGGCACGCGCGAAGCGACCGCTTGAAGTGGAGGTATGCATC
GCAAGGGATTATATTTTCTCGCCTCCCTATTTCGATTAACCCTGATTCGC
TTGATTATCATATATCAACCTAAATACTAAAATGAATACCGTGTAAAGTA
TAAGGGAGACCTCCTGAGAGATTTTCTAAACGCTTCTCTCGCTAGAATAC
GTGGTAGAAGGCAATCATCATCCGAATCGAAACCAACTCAGGGGGCAACG
CGCACGTCAAACTTTGAAACCCTCCACCCTCTACCCGTCCTACCTTCCGT
GCAAAATCCCACAAAACAGCACACACTGAGCTATGAGGTGCGTCGCGATC
GTGAGCGAGACGAAGAGGCTGAAGTACGGATGATGGAACGAGAAGCCCAG
AAGCACCGGTGGGGTGCAGAAAAGGACGGGGGGTACAAAGGGCCGGAATT
TGTTACAAAATGAAGCTAGATTCGTAAATGATAAAAGTGATATCTTGGTC
GCCTGGTCCGTTAAACTCGAGATGTGTCCATGGCTTCTCCCAGCGTTTGT
GTGCTCCTTTGCACCAGTCGATCCATTTCTTCGCGCTGTCCTTCGTGCAG
GTTTGGGTTTAAACTTACCATATCTACTGTGTGTACTAATCCACCAAACA
CAACATGGACCCGAAATTTACTGAAATGTTAGGTTTGAAGGGGTGAAGGA
GAAGGGGGAAGGCAACCAGGATATTCGAGAAGTCTACGACGCGGTGGTGA
GCTTCGTTGCGTGTCGGTCTTACTCGCCAGCAGGGGTTCATATTTGGTGC
TCTCTTACACTGAAGCGCAGACCGAAATGACATCAAACAACTCGTTCGTG
ACGTTTGTATCGATGTTGTTCCACGAAGTCAAACGTTTTCGTACAGTTCT
CACGTGGTTACTCGAGTCGCAGGAAAAAAACAACCATTGAACTCCACGCC
CTGCACCTTGCTCCTGAGCAATGTTACCTCCTCACTGCCGCAACAGATAT
CAAGTATCCGCGATATTATATCCAAGTCAACCTTCGACGCTCGTCGCGCG
AAGACTGATTACCGGGGACGGGGTCCCAATGAGGTGAGCGGGGCTACTGG
GCGGCTCTGTGCCCAACGGACGGGATGAAACCATGAATGCCGTGAACCTA
GCCGGTACTTTCAACATGCCCACTTCATACCAATAGTGGGTGTGGGAAAG
AGGGGCGAATATTAATTGGTCCATGGTGACCTGCCAAGGCAGCACTCGTT
CGGGACTACCTTGATGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGT
GAACGCCATCGGTACGCAACTGCGTGACCCGATAAACTCTGGACTGACCC
GATGGCGTATGGCGGTTTCATAAATGGACGCCGCCGCGGAACTCGGGAGG
AATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGC
TGACGCGGGACGGGACGGCTGAACCCGTCTCGCGAGACCAAATTCTCAGG
CACGCACGGGGACAGGGGATTGTTTATTTTCCCTGTTCAGCTGACCACGA
GCAGGATTGGCAACCTTACACGGTTGATCCATACTCTGCTATATGTGATG
ACCATACATACATACATACATACATACATACTGAAACAGGCTATGGAGCG
TGTTCCAACCGCGCTTGATCCTAATGACGCTACGGAACCGCATTAGTAGC
CACGCACGGAACTTTTCTCCGAAACCTTCCCTCCGAATCCCCAACCCCAT
GAATCGACGTTCCACATTCAATGCCTAGCCGCGCGTTATCTTGGCGTCAG
GTCGGCCCCGCAGCATCAGCGGCTGCAACCGCCGCCGCCACCACCGCAAG
AAAGGCCGCATTGGCCATCGTAGACGATAGTGAGGTAGTTGAAACCGTAG
CCGCGATGGCTGCGGCCGACGCCTCGGCGTTAGCTACAGTGGCTGGCTCA
GAACTAGGCGGGGGAAACGTTTGCCGCGCGTGCGGTGGTCCTAGGTTCAA
CAGGACCGTCTGCGCCAAGTGCGGGGCGCACTCGAGTATGTGGTTGGACG
GGGCAGTGTTGAACGCCGGTGGCGATCGGTAGTCGCGTACAATTTTGAGC
CGCACTCTCGCGCCTCGTTTACACTTTCGAATAACTCAAACGACGCGAAA
AAATGGTGACTTAGTGGTGGATAGCGCCGGAGCATATCAGTGGGTAGCTT
TGCCAGAAGGTGGACGTCCATTGCGTCGTGGCTTCGCGAAATAAATAAAC
AAATGAAAAGACTAAAAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig6282:23204..26721+ >mRNA_F-serratus_M_contig6282.17131.1 ID=mRNA_F-serratus_M_contig6282.17131.1|Name=mRNA_F-serratus_M_contig6282.17131.1|organism=Fucus serratus male|type=CDS|length=1776bp|location=Sequence derived from alignment at F-serratus_M_contig6282:23204..26721+ (Fucus serratus male) ATGTCCATCATGGACATGAATGTCGCCCATGTTTATAACAGCACAACTGT CCTGAAGATGAACTTCCAAGCAATAACCTCATCCAACATTCATTGTGAAT ACGAATATTTGGGCAATGCGATGTCCATCATGGACATGAATGTCGCCCAT GTTTATAACAGCACAACTGTCCTGAAGATGAACTTCCAAGCAATAACCTC ATCCAACATTCATTGTGAATACGAATATTTGGGCAATGCGATCGACGACC AAGAGACCGACATGGATGAGGCGTCGATGAGGGAGTTTGACCGCACGGAG GCGTTACGCAGGAGTGAGTTAAAAGTACGTCTCGATCGAGCAGTGAGGCA CAAAGAGAGGGCTGTTCGGCGAGAACGCATGCGGTGGGCGATCGACGACC AAGAGACCGACATGGATGAGGCGTCGATGAGGGAGTTTGACCGCACGGAG GCGTTACGCAGGAGTGAGTTAAAAGTACGTCTCGATCGAGCAGTGAGGCA CAAAGAGAGGGCTGTTCGGCGAGAACGCATGCGGTGGGCGGTGCGGGACG TTCGCCGCAAGGTGATCAGGCGTTCTCGGCAAGACCTGGTGCACTTTGCG AAACTGGCACGCGCGAAGCGACCGCTTGAAGTGGAGGTGCGGGACGTTCG CCGCAAGGTGATCAGGCGTTCTCGGCAAGACCTGGTGCACTTTGCGAAAC TGGCACGCGCGAAGCGACCGCTTGAAGTGGAGCACACACTGAGCTATGAG GTGCGTCGCGATCGTGAGCGAGACGAAGAGGCTGAAGTACGGATGATGGA ACGAGAAGCCCAGAAGCACCGCACACACTGAGCTATGAGGTGCGTCGCGA TCGTGAGCGAGACGAAGAGGCTGAAGTACGGATGATGGAACGAGAAGCCC AGAAGCACCGGTTTGAAGGGGTGAAGGAGAAGGGGGAAGGCAACCAGGAT ATTCGAGAAGTCTACGACGCGGTGGTTTGAAGGGGTGAAGGAGAAGGGGG AAGGCAACCAGGATATTCGAGAAGTCTACGACGCGGTGATATCAAGTATC CGCGATATTATATCCAAGTCAACCTTCGACGCTCGTCGCGCGAAGACTGA TTACCGGGGACGGGGTCCCAATGAGATATCAAGTATCCGCGATATTATAT CCAAGTCAACCTTCGACGCTCGTCGCGCGAAGACTGATTACCGGGGACGG GGTCCCAATGAGGTCGGCCCCGCAGCATCAGCGGCTGCAACCGCCGCCGC CACCACCGCAAGAAAGGCCGCATTGGCCATCGTAGACGATAGTGAGGTAG TTGAAACCGTAGCCGCGATGGCTGCGGCCGACGCCTCGGCGTTAGCTACA GTGGCTGGCTCAGAACTAGGCGGGGGAAACGTTTGCCGCGCGTGCGGTGG TCCTAGGTTCAACAGGACCGTCTGCGCCAAGTGCGGGGCGCACTCGAGTA TGTGGTTGGACGGGGCAGTGTTGAACGCCGGTGGCGATCGGTAGGTCGGC CCCGCAGCATCAGCGGCTGCAACCGCCGCCGCCACCACCGCAAGAAAGGC CGCATTGGCCATCGTAGACGATAGTGAGGTAGTTGAAACCGTAGCCGCGA TGGCTGCGGCCGACGCCTCGGCGTTAGCTACAGTGGCTGGCTCAGAACTA GGCGGGGGAAACGTTTGCCGCGCGTGCGGTGGTCCTAGGTTCAACAGGAC CGTCTGCGCCAAGTGCGGGGCGCACTCGAGTATGTGGTTGGACGGGGCAG TGTTGAACGCCGGTGGCGATCGGTAG back to top
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