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Homology
BLAST of mRNA_F-serratus_M_contig628.17119.1 vs. uniprot
Match: D8LR01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR01_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 5.780e-18 Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 3
Query: 651 IDSLYVDCDGVTLPDGLFYDPSDLIDGEWSDHVKAAIKIATERCGCDGAGRTKPVSG 821
+D+ Y DCDGVT PDGL++DP + I+GEWSD VKA IKIATERCGCD A R P+ G
Sbjct: 1 MDNFYADCDGVTTPDGLYFDPDNAIEGEWSDKVKAQIKIATERCGCDAANRLAPLRG 57
BLAST of mRNA_F-serratus_M_contig628.17119.1 vs. uniprot
Match: A0A067CKU1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKU1_SAPPC) HSP 1 Score: 89.7 bits (221), Expect = 1.710e-17 Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 3
Query: 591 GACMQCDPANNVCPLGCQALIDSLYVDCDGVTLPDGLFYDPSDLIDGEWSDHVKAAIKIATERCGCDGAGRT 806
G+CM CDPA N CP CQ LI++LYVDCDGV P GLF+DP+ I G W+ V +IA ERCGC+ A RT
Sbjct: 56 GSCMSCDPAQNKCPAKCQPLINTLYVDCDGVYSPPGLFFDPAAKIHGYWNGQVNVT-RIAVERCGCNDALRT 126
BLAST of mRNA_F-serratus_M_contig628.17119.1 vs. uniprot
Match: A0A6H5JA51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA51_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.300e-16 Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 3
Query: 651 IDSLYVDCDGVTLPDGLFYDPSDLIDGEWSDHVKAAIKIATERCGCDGAGRTKPVSG 821
+D+LY CDGVT PDGL++DP + I+GEWSD ++A IKIATERCGCD A R P+ G
Sbjct: 1 MDNLYSHCDGVTTPDGLYFDPDNAIEGEWSDKIEAQIKIATERCGCDAANRLAPLRG 57
BLAST of mRNA_F-serratus_M_contig628.17119.1 vs. uniprot
Match: A0A7S1XWD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWD0_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 7.870e-12 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 3
Query: 594 ACMQCDP-ANNVCPLGCQALIDSLYVDCDGVTLPDGLFYDPSD---LIDGEWSDHVKAAIKIATERCGC 788
+CM C+ CP GCQ ID++Y CDGV LPDGL+YDP+ I G WS+ V+ +K+A E+CGC
Sbjct: 134 SCMSCEGNTQRECPSGCQRRIDTMYKSCDGVVLPDGLYYDPAPRPGYIKGRWSEKVQEQVKMAVEKCGC 202
BLAST of mRNA_F-serratus_M_contig628.17119.1 vs. uniprot
Match: A0A7S3ZYN4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYN4_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.160e-9 Identity = 40/110 (36.36%), Postives = 49/110 (44.55%), Query Frame = 3
Query: 582 GNDGACMQCDPA----------NNVCP-----------LGCQALIDSLYVDCDGV-------------TLPDGLFYDPSDLIDGEWSDHVKAAIKIATERCGCDGAGRTK 809
G+ CM CDP CP + CQ +D LY C G TLP G FYDP D I G W+D V+ AIKIA E+CGC+GA ++
Sbjct: 101 GDKYGCMSCDPTVGWPTGSCPTQKKCPQTEEDAKPCDKMDCQVYVDQLYEYCRGKKGFLFFVPEQKPKTLPAGFFYDPEDTITGTWNDEVEQAIKIAVEKCGCNGAAGSR 210
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 82.8 |
| Seed ortholog evalue | 2.3e-13 |
| Seed eggNOG ortholog | 65071.PYU1_T002543 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | function. Source PGD |
| EggNOG OGs | 1MHTN@121069,2CXBZ@1,2S4KE@2759 |
| COG Functional cat. | S |
| Best tax level | Pythiales |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 1833 |
| Cds size | 696 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931941.0666566-UTR-F-serratus_M_contig628:268800..269021 | 1622931941.0666566-UTR-F-serratus_M_contig628:268800..269021 | Fucus serratus male | UTR | F-serratus_M_contig628 268801..269021 + |
| 1690964067.9252815-UTR-F-serratus_M_contig628:268800..269021 | 1690964067.9252815-UTR-F-serratus_M_contig628:268800..269021 | Fucus serratus male | UTR | F-serratus_M_contig628 268801..269021 + |
| 1622931941.168662-UTR-F-serratus_M_contig628:271827..272490 | 1622931941.168662-UTR-F-serratus_M_contig628:271827..272490 | Fucus serratus male | UTR | F-serratus_M_contig628 271828..272490 + |
| 1690964067.9767554-UTR-F-serratus_M_contig628:271827..272490 | 1690964067.9767554-UTR-F-serratus_M_contig628:271827..272490 | Fucus serratus male | UTR | F-serratus_M_contig628 271828..272490 + |
| 1622931941.194241-UTR-F-serratus_M_contig628:272978..273231 | 1622931941.194241-UTR-F-serratus_M_contig628:272978..273231 | Fucus serratus male | UTR | F-serratus_M_contig628 272979..273231 + |
| 1690964067.9883473-UTR-F-serratus_M_contig628:272978..273231 | 1690964067.9883473-UTR-F-serratus_M_contig628:272978..273231 | Fucus serratus male | UTR | F-serratus_M_contig628 272979..273231 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931941.0850666-CDS-F-serratus_M_contig628:269021..269333 | 1622931941.0850666-CDS-F-serratus_M_contig628:269021..269333 | Fucus serratus male | CDS | F-serratus_M_contig628 269022..269333 + |
| 1690964067.9357662-CDS-F-serratus_M_contig628:269021..269333 | 1690964067.9357662-CDS-F-serratus_M_contig628:269021..269333 | Fucus serratus male | CDS | F-serratus_M_contig628 269022..269333 + |
| 1622931941.1096528-CDS-F-serratus_M_contig628:269660..269750 | 1622931941.1096528-CDS-F-serratus_M_contig628:269660..269750 | Fucus serratus male | CDS | F-serratus_M_contig628 269661..269750 + |
| 1690964067.945014-CDS-F-serratus_M_contig628:269660..269750 | 1690964067.945014-CDS-F-serratus_M_contig628:269660..269750 | Fucus serratus male | CDS | F-serratus_M_contig628 269661..269750 + |
| 1622931941.1299527-CDS-F-serratus_M_contig628:270473..270596 | 1622931941.1299527-CDS-F-serratus_M_contig628:270473..270596 | Fucus serratus male | CDS | F-serratus_M_contig628 270474..270596 + |
| 1690964067.9552279-CDS-F-serratus_M_contig628:270473..270596 | 1690964067.9552279-CDS-F-serratus_M_contig628:270473..270596 | Fucus serratus male | CDS | F-serratus_M_contig628 270474..270596 + |
| 1622931941.148617-CDS-F-serratus_M_contig628:271656..271827 | 1622931941.148617-CDS-F-serratus_M_contig628:271656..271827 | Fucus serratus male | CDS | F-serratus_M_contig628 271657..271827 + |
| 1690964067.9655218-CDS-F-serratus_M_contig628:271656..271827 | 1690964067.9655218-CDS-F-serratus_M_contig628:271656..271827 | Fucus serratus male | CDS | F-serratus_M_contig628 271657..271827 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig628.17119.1 >prot_F-serratus_M_contig628.17119.1 ID=prot_F-serratus_M_contig628.17119.1|Name=mRNA_F-serratus_M_contig628.17119.1|organism=Fucus serratus male|type=polypeptide|length=232bp
MTQPLFLSMLARGGIRIALKTFGATNDTPAQDPPVWGLSGIDSQQTHSGV VITMGRSRPQGIIRPSRQGPVAAISKILAFSAMLLSVHVTGITTDYIKPT VSSKACVGTTELITTKTEELGNDGACMQCDPANNVCPLGCQALIDSLYVD CDGVTLPDGLFYDPSDLIDGEWSDHVKAAIKIATERCGCDGAGRTKPVSG TSFKTLAAKHISILALAAVTRSLAGCMLILP* back to topmRNA from alignment at F-serratus_M_contig628:268801..273231+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig628.17119.1 ID=mRNA_F-serratus_M_contig628.17119.1|Name=mRNA_F-serratus_M_contig628.17119.1|organism=Fucus serratus male|type=mRNA|length=4431bp|location=Sequence derived from alignment at F-serratus_M_contig628:268801..273231+ (Fucus serratus male) TCACTACTACCCAGGACGCCCAGCTCTGGATGGAGGGGTGAATATCGTAG
CGCACTCTTGTTACGCGTGGCATCCCCCATACAGGTCTGACAACGCCTTG
TCGAAAACCAAAGTGCTTATTCATGTTGTTGGCATTCCACAAGAAGTACT
CTCAGAAAGTTTAGATTCAGGATTAACATTGACATCAAGCGCTCCATTCT
ATACCGGGGCCAGGGTGGCGAATGACTCAACCTCTGTTCTTGAGCATGCT
AGCACGTGGCGGGATAAGAATCGCCCTGAAAACGTTTGGTGCCACAAATG
ATACGCCAGCCCAAGACCCGCCTGTCTGGGGCCTGAGCGGCATCGACTCA
CAGCAGACGCATTCCGGTGTGGTCATAACTATGGGCCGTTCAAGGCCGCA
AGGCATAATCAGGCCCTCGAGACAGGGCCCTGTGGCAGCAATCTCCAAGA
TACTTGCTTTCTCGGCGATGTTACTTTCAGTACATGTGACGGGCATCACA
ACGGACTACATCAAGCCGACCGTAAGCTCAAAGGCAAGTCGTGGACGTGT
GTTGAAGGTCATGGAAACACACGGCACTTTGTTACTATAAATAGGTAATT
TACACCGCGACTGGCTGAGGGCTCCACTCATACCCAATTTCTCGGTGATG
TCTGCGCATCGGGAGGAAAATGGTGATTTCGTTCTCGTGAAGCCCTCAGC
TACTTAGTGCTTGTTTCAAAATTCTTGTACGGTACTGCTGACGGGTTCAA
ATAACCATGCGCTAGCTATGTCGCACCACCGCAATTGGGTAACAACCCCT
ACGCACTTGACTTGACGTACGGCTTGGTACCATTCCGCACAACGTTACTT
ATATATTCAGGCATGTGTAGGGACGACGGAGCTCATCACAACCAAAACAG
AGGAGCTTGGGAACGACGGGGCCTGCATGCAGTGTGACCCAGCCAACAAC
GTAGGTCGCTTCCCTGGACGTGCGCCGTCCTCATAAAGGCCCAGAGCAGG
GAACATATATTCGCTAGTCGCTCTGCCCAAATTTCGATACTTCATGTGTG
TATGGTCATTACATATAGCAAGAGTAAGGATCAACCGGGTAAGGTTGCCA
ATCCTGCTCGTGGTCAGCTGGACAGGGAAATGTTGTTTTTTTCCTTTCCA
CCGTTCGCGCCTGATAATTTGGTCTCGCGAGACGGGTCCGGTAGTCCCGT
CCCGCGTCAACCTGCTCATCTCCATACTTAGGCTAGACAGAATCATCCTC
GCCAGGGCGAAGCCTGCGCCGTGGGATGCGTCCACGGGGCCGCGTGGCAC
AATATGGTTTAGCCATGAGGCTGCACCAAATATTTGGAGTTCGCCGAGCA
CTGCTTGTCTTCCGATTGTTCTCTCCCGGTCGGTGAAACAAAACAACATG
ATGCGTTGTCCTGCTTCGCAAGACTTGCTTTGATTTTACCACACCGTACT
GGTGCTTACCTTACATCAATAGCCCGGTCTTCGACAGACTGGCCGTCGGC
ACCTGTATCAAGCCGTTCTATTTTATCATTTTGTACAAGTAGTAAACACG
GTGCACGCATTCTGGTTGAGGAGGAATGTCTCCTATAGTCCAGCCTGCTG
TCGCTGCTGAGCCACGCTAACCAAACGTTTGCCACATACCGCGGTTTCAC
GCTCCATACTTCTTGGTAAACAGGTCTGTCCTCTGGGGTGCCAGGCACTC
ATCGACAGTCTCTACGTGGACTGCGACGGTGTCACTCTGCCCGACGGCCT
GTTCTACGATCCCTCTGACTTAATTGACGGAGAGTGGTCCGACCACGTAA
GAGTATCTCGATTTTGAAGAAAGATATAATGAAAAAGAAAAACGGGGGCA
AGAAAGTGAAAAATACCAAAAAATAAATCCGCGCGAACGGCATCCCCCAT
TAACTCGCTTGCGCATATCGCCCGCCAGCATTTACATTCGTTCTGCTGGT
GCTGTGTAAGCACGATCCTGAACGCAAAGATTCAAGCATAGTGCGTCTCG
CCCTACAGTTAGGCATGCTATTTCAGCACGTAGTACAGAAGTAGATTGTG
GTGTATTTAACCCTGTCGGTCCAAGTTTCCGAACAGTCCTCTTGAGGTTC
CGCAAACCCGGCTATGGTGCCAACTGCTTTATTACCCAGTCCCTGTGGAC
CTGATTGTAACCTCTTGCAGTCAACGCTGACTAGTAAAGTCTAATAGGTT
AATGCCGGCTTTACCAAAAATTAGTCAGTCGCGGGTTCGATTCCTAGGCT
AAGACTTCTGGAGTTTTCCTCGATTCCTAAGGACCCTGAATTCTCTTGGA
TACAGGGGTAGAGGAGAGGTGGAATAACTCCAGAGACCCTGACACTCTGG
TTTGAATGGGGTGGAATTAAAAAGTGCAACATGTGGGGGAAACATTAGAC
AAACTTAGTATCGCTGGCAAGAATAGCTACTATCCTCGGAGTTAAAATGG
CTTTATCCTTCGGATCCCACTATTAGTCTAATACTATTATATTATAGCTT
TTTGCGAAGCCGAAGTCAGTTAGTCTAATTTCGGCTTCACGGGCCTTCTA
AAAGGGTCCATCTCGACGCGCAGGGTCGTATTCGCTATGTGGGGAAAATG
AAAGTACCTATGAGAGATTCGCTTGTTGTAACTTCATTGACTCTTTACCA
TGTATCTTGCTTGGCTTGAGCACGTTGCTGACACATGGTGGGCGATCTGA
CCCTGCGGAGGGTTTTCGCTTGGTTGGATCGCTACGTACTCTCTGGTTTG
GTTACTTAAGAATTTATTTTTTTATCACCACTACGGCTGAAACAGAATGA
ATAAGTATCGCTCGATATATCCACGTTCCACACGTTCCGTGAGTGCCCGC
GCACAGGTGAAAGCCGCCATCAAGATAGCTACGGAGAGATGCGGATGCGA
TGGCGCTGGTCGGACGAAGCCAGTAAGCGGGACGTCCTTCAAAACGTTGG
CAGCCAAACACATTAGCATTTTGGCGCTGGCCGCTGTGACTCGATCGCTG
GCGGGATGCATGTTGATCTTGCCCTAGCTGTAGCTGCGCCAACTTTTAAT
AACCCAAAGTTACGCGGTGTATCATCTAGTTCTTATGTCAAGTCTCAACG
CTAACTATGTTATTGATGAACCTCGAGTCCATGGGTGAAGAGAAACGATG
TGTGCTGCTTGTGCTACTCGTGCTTCGTTGAGTAGACGATCCTGAAAAGC
CTCAACACTACCGGCTCCAGTCAGAGATAGGCAAAGGGTGGTATCCATGA
ACAGTGGCCAGTTACCCTATGCCTGCGCACATCGGGAGAAGGAGTTAGAA
GAGTTTCAGCATAACTTTGAAGTGTGATAATAGTCGCGGCCACCGCAAGT
CTTAGAGCGGAAGCGAGGCGCTGCCTCGCCTTATCAAGCCGCCTTTGTCT
TATTGCTTTTACTGCAGAAGGAGTGAGCCGCGGTAAAATATTTAGTGCCC
GGCCACCGGCGTCGACGGCGATATTTACTTCGGTGTTATAATTGGGGCAG
AAGGCCAAAGATTTCAGTGTCCCATGAGGCACTCTTAACCTATCAACAAA
GCAGAGCACCCTGGCAGGAGCTATGTTGTTATCCTCTTGATGGTTGAGCG
TGTTGAATTTTGGGTGCATCGACCGAAGATCCCTCACAGTAACTAGCGGC
TAGTGCGTAGTCCGCCTCGCTGTCCTCCTTTGAGTGCACTATATACCGCC
GTTACTTTCAACATGCCCACTTCATACCAATAGTGGGGGTGGGAAAGAGA
GGCGAATATTAATTGGTCCATAGTGACCTGCTAAGGCAGCACTCGTTCGG
AACTACTTTGAGGTTTACTGGTCATGTGCCGGCGGACTCTCGGCAGTGAA
CGCCATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGAT
GGCGTATGGCGGTTTCATAAATGGACGCCGCCGCGGAACTCGGGAGGAAT
CCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGA
CGCGGGACGGGACGGCTGAACCCGTCTCGCGAGACCAAATTCTCAGGCAC
GCACGGGGACAGGGGAATATCCATTTCCCCTGTTCAGCTGACCACAAGCA
GGATTGGCAACAATACCTGGTTGATCCATACTCTGCTATAAGTGATGACC
ATACATACATACATACATACATACATACATACACTGTGACGAAGGGTCGG
CTGGGCAGGAAAAGTCTCCTTAAAGCTGGATCTCTTTTCTTTCAAAACAC
AACAATTAGATTTGCCATCAAGCGGGCGAAATATAGACGACCAAGGTGCT
CAAGTCCAACCGTGTGGCATAAACCGACGCAAGGAAAACGATACCGTGAA
AGTAACTTGTAGATAGAGATGAAGAAAATCGGCACACGGGTATTTTATAT
ACAATATACTTCGCCGTGGCGGGAAGAAAAC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig628:268801..273231+ >mRNA_F-serratus_M_contig628.17119.1 ID=mRNA_F-serratus_M_contig628.17119.1|Name=mRNA_F-serratus_M_contig628.17119.1|organism=Fucus serratus male|type=CDS|length=1392bp|location=Sequence derived from alignment at F-serratus_M_contig628:268801..273231+ (Fucus serratus male) ATGACTCAACCTCTGTTCTTGAGCATGCTAGCACGTGGCGGGATAAGAAT CGCCCTGAAAACGTTTGGTGCCACAAATGATACGCCAGCCCAAGACCCGC CTGTCTGGGGCCTGAGCGGCATCGACTCACAGCAGACGCATTCCGGTGTG GTCATAACTATGGGCCGTTCAAGGCCGCAAGGCATAATCAGGCCCTCGAG ACAGGGCCCTGTGGCAGCAATCTCCAAGATACTTGCTTTCTCGGCGATGT TACTTTCAGTACATGTGACGGGCATCACAACGGACTACATCAAGCCGACC GTAAGCTCAAAGATGACTCAACCTCTGTTCTTGAGCATGCTAGCACGTGG CGGGATAAGAATCGCCCTGAAAACGTTTGGTGCCACAAATGATACGCCAG CCCAAGACCCGCCTGTCTGGGGCCTGAGCGGCATCGACTCACAGCAGACG CATTCCGGTGTGGTCATAACTATGGGCCGTTCAAGGCCGCAAGGCATAAT CAGGCCCTCGAGACAGGGCCCTGTGGCAGCAATCTCCAAGATACTTGCTT TCTCGGCGATGTTACTTTCAGTACATGTGACGGGCATCACAACGGACTAC ATCAAGCCGACCGTAAGCTCAAAGGCATGTGTAGGGACGACGGAGCTCAT CACAACCAAAACAGAGGAGCTTGGGAACGACGGGGCCTGCATGCAGTGTG ACCCAGCCAACAACGCATGTGTAGGGACGACGGAGCTCATCACAACCAAA ACAGAGGAGCTTGGGAACGACGGGGCCTGCATGCAGTGTGACCCAGCCAA CAACGTCTGTCCTCTGGGGTGCCAGGCACTCATCGACAGTCTCTACGTGG ACTGCGACGGTGTCACTCTGCCCGACGGCCTGTTCTACGATCCCTCTGAC TTAATTGACGGAGAGTGGTCCGACCACGTCTGTCCTCTGGGGTGCCAGGC ACTCATCGACAGTCTCTACGTGGACTGCGACGGTGTCACTCTGCCCGACG GCCTGTTCTACGATCCCTCTGACTTAATTGACGGAGAGTGGTCCGACCAC GTGAAAGCCGCCATCAAGATAGCTACGGAGAGATGCGGATGCGATGGCGC TGGTCGGACGAAGCCAGTAAGCGGGACGTCCTTCAAAACGTTGGCAGCCA AACACATTAGCATTTTGGCGCTGGCCGCTGTGACTCGATCGCTGGCGGGA TGCATGTTGATCTTGCCCTAGGTGAAAGCCGCCATCAAGATAGCTACGGA GAGATGCGGATGCGATGGCGCTGGTCGGACGAAGCCAGTAAGCGGGACGT CCTTCAAAACGTTGGCAGCCAAACACATTAGCATTTTGGCGCTGGCCGCT GTGACTCGATCGCTGGCGGGATGCATGTTGATCTTGCCCTAG back to top
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