mRNA_F-serratus_M_contig628.17117.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig628.17117.1
Unique NamemRNA_F-serratus_M_contig628.17117.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig628.17117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig628contigF-serratus_M_contig628:129700..130280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size581
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig628.17117.1prot_F-serratus_M_contig628.17117.1Fucus serratus malepolypeptideF-serratus_M_contig628 129882..130202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931940.3092475-UTR-F-serratus_M_contig628:129699..1298811622931940.3092475-UTR-F-serratus_M_contig628:129699..129881Fucus serratus maleUTRF-serratus_M_contig628 129700..129881 +
1690964067.4863355-UTR-F-serratus_M_contig628:129699..1298811690964067.4863355-UTR-F-serratus_M_contig628:129699..129881Fucus serratus maleUTRF-serratus_M_contig628 129700..129881 +
1622931940.3462176-UTR-F-serratus_M_contig628:130202..1302801622931940.3462176-UTR-F-serratus_M_contig628:130202..130280Fucus serratus maleUTRF-serratus_M_contig628 130203..130280 +
1690964067.5073218-UTR-F-serratus_M_contig628:130202..1302801690964067.5073218-UTR-F-serratus_M_contig628:130202..130280Fucus serratus maleUTRF-serratus_M_contig628 130203..130280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931940.3289554-CDS-F-serratus_M_contig628:129881..1302021622931940.3289554-CDS-F-serratus_M_contig628:129881..130202Fucus serratus maleCDSF-serratus_M_contig628 129882..130202 +
1690964067.4970555-CDS-F-serratus_M_contig628:129881..1302021690964067.4970555-CDS-F-serratus_M_contig628:129881..130202Fucus serratus maleCDSF-serratus_M_contig628 129882..130202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig628.17117.1

>prot_F-serratus_M_contig628.17117.1 ID=prot_F-serratus_M_contig628.17117.1|Name=mRNA_F-serratus_M_contig628.17117.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MFRFTMQNYQSTFVCYSTPFRTRLLQYQCNLIYFLPPSDTLLQSHEFKTG
PIHHSTSYRIFEAKLFNEAFMTKEHSNTTREKEIDPCSITRYSPQLVVFS
QCVQPR*
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mRNA from alignment at F-serratus_M_contig628:129700..130280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig628.17117.1 ID=mRNA_F-serratus_M_contig628.17117.1|Name=mRNA_F-serratus_M_contig628.17117.1|organism=Fucus serratus male|type=mRNA|length=581bp|location=Sequence derived from alignment at F-serratus_M_contig628:129700..130280+ (Fucus serratus male)
CCCAGCACCTTCTGAGGGCACCTTGCTGGTGTTCCGAAAATAATAACGTA
ATCGGTATTCTGTAGGTGCCGACATTTTCATTTAACGCTCGCAATGTTTT
ACGTCGACGTTGTAATTTCGTACCTAACAGATTTGGGTCGTCGAAATGCA
AGCAATCAAACCCCGGTAAAAAGTAACTCCAGATGTTTAGATTCACAATG
CAGAACTACCAATCTACGTTTGTCTGTTACTCGACGCCATTCAGAACCAG
GCTACTACAATATCAGTGTAACTTGATATATTTCCTCCCGCCCAGCGACA
CGTTACTACAATCACACGAGTTCAAAACGGGTCCTATTCACCATTCGACC
TCTTACAGGATCTTTGAAGCAAAACTTTTCAACGAGGCGTTCATGACGAA
GGAACACTCAAATACAACCCGCGAAAAGGAAATTGATCCATGTAGCATAA
CACGATACTCCCCGCAGCTTGTCGTTTTCAGCCAATGTGTTCAGCCGAGA
TAAATCGTCTGCTTCATCGTTCATAAAGTCTCAAGGAAGACGATTGAGTT
TCAGCAGAAAAAGGTAACCCCGCATTAGTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig628:129700..130280+

>mRNA_F-serratus_M_contig628.17117.1 ID=mRNA_F-serratus_M_contig628.17117.1|Name=mRNA_F-serratus_M_contig628.17117.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig628:129700..130280+ (Fucus serratus male)
ATGTTTAGATTCACAATGCAGAACTACCAATCTACGTTTGTCTGTTACTC
GACGCCATTCAGAACCAGGCTACTACAATATCAGTGTAACTTGATATATT
TCCTCCCGCCCAGCGACACGTTACTACAATCACACGAGTTCAAAACGGGT
CCTATTCACCATTCGACCTCTTACAGGATCTTTGAAGCAAAACTTTTCAA
CGAGGCGTTCATGACGAAGGAACACTCAAATACAACCCGCGAAAAGGAAA
TTGATCCATGTAGCATAACACGATACTCCCCGCAGCTTGTCGTTTTCAGC
CAATGTGTTCAGCCGAGATAAATGTTTAGATTCACAATGCAGAACTACCA
ATCTACGTTTGTCTGTTACTCGACGCCATTCAGAACCAGGCTACTACAAT
ATCAGTGTAACTTGATATATTTCCTCCCGCCCAGCGACACGTTACTACAA
TCACACGAGTTCAAAACGGGTCCTATTCACCATTCGACCTCTTACAGGAT
CTTTGAAGCAAAACTTTTCAACGAGGCGTTCATGACGAAGGAACACTCAA
ATACAACCCGCGAAAAGGAAATTGATCCATGTAGCATAACACGATACTCC
CCGCAGCTTGTCGTTTTCAGCCAATGTGTTCAGCCGAGATAA
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