mRNA_F-serratus_M_contig6272.17112.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6272.17112.1
Unique NamemRNA_F-serratus_M_contig6272.17112.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 8.250e-46
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   49 LTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
            + VALN  QY  S +CGACIEGEG G G G DP+ G+FKAYV D+CPEC  GDLDF+  GDGRWDISW FV C G    +F+FEGS+E+YWKIQPRG ++PV  L +
Sbjct:   72 IPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWI 178          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 9.880e-45
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1
Query:   49 LTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
            + VALNA QY  S +CGAC+EG  SG+G+G++PI  +FKA++ DKCPEC  GDLDFS SGDGRWDI WKFV CPG +T SF+   ++ YYWK+QPRGT TPVV L V
Sbjct:  137 IPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEET-SFVSPSANPYYWKVQPRGTTTPVVSLTV 242          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 4.040e-42
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
            VALN  QY  S +CGAC+EGEG+G G+GSDP+ G+FK ++MDKCPEC+ GDLDF    DGRWDI WKFVECP  +  SF  E   EYYWKIQPRGT TPV  L +
Sbjct:  346 VALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTI 449          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR)

HSP 1 Score: 142 bits (358), Expect = 1.780e-39
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   49 LTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
            L VA+N AQY+ S  CGAC++  G G G+G++PI G+FKAYV D+CPEC  GD+D SK GDGRW + WKF+ CPG +   F+FEGS+ YY K+QPRG KTPV  L V
Sbjct:   58 LPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPG-EFVFFLFEGSNRYYLKLQPRGLKTPVSALSV 163          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR)

HSP 1 Score: 137 bits (346), Expect = 1.060e-37
Identity = 59/105 (56.19%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
            VA+N AQY+ S+ CGAC+   G G G+G++P+ G+FKAYV D+CPEC  GD+D SKSGDGRW + W+F+ CPG +   F+FEGS+ +Y K+QPRG KTPV    V
Sbjct:   55 VAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPG-EWVFFLFEGSNRFYLKLQPRGLKTPVTYFSV 158          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.800e-37
Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
            VALNAAQY  S +CG+C+EGEG+G G G +PI G+FK ++MDKCPEC  GDLDF    DGRWDI W+FV CPG +  SF       YYWKIQPRGT TPV  L +
Sbjct:  383 VALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEV-SFKVVEMTPYYWKIQPRGTATPVESLTI 485          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A1X6NJE1_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJE1_PORUM)

HSP 1 Score: 130 bits (326), Expect = 1.860e-35
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1
Query:   55 VALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFMFEGSHEYYWKIQPRGTKTPVVELMV 369
            VA++ A Y GS  CGAC+   GSG+GAG++PITG+F AYVMD+CPECA GDLD +  GDGRW +SW  V CP     P F+ EGS+ +Y K+Q RG   P   + V
Sbjct:   78 VAVSTADYAGSAACGACLRVTGSGDGAGANPITGTFSAYVMDRCPECAAGDLDLATPGDGRWAVSWTVVPCPTAGGAPEFLLEGSNPHYLKVQVRGLPAPAASVSV 183          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A2P6NBD6_9EUKA (Endochitinase-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBD6_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 1.540e-30
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 1
Query:   46 DLTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFMFEGSHEYYWKIQPRGTKTPV 354
            D++VA+ +A + GS  CG+CI+  GSG GAGS+P+ G+F A+V D+CP C  G LDF+K+GDG WDISWK V+CP G+    + F+GS+E+Y K+Q R  +TP+
Sbjct:  367 DVSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPL 470          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A2P6NBF0_9EUKA (MAP/microtubule affinity-regulating kinase 3-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBF0_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 1.570e-30
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 1
Query:   46 DLTVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFMFEGSHEYYWKIQPRGTKTPV 354
            D++VA+ +A + GS  CG+CI+  GSG GAGS+P+ G+F A+V D+CP C  G LDF+K+GDG WDISWK V+CP G+    + F+GS+E+Y K+Q R  +TP+
Sbjct:  760 DVSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPL 863          
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Match: A0A7S4IRK7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IRK7_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 2.330e-30
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   52 TVALNAAQYDGSELCGACIEGEGSGNGAGSDPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGS-DTPSFMFEGSHEYYWKIQPRGTKTPVVEL 363
            TVA+N+ QY GS  CG CI+  G G G+G+DPI G+F  YV D CPECA+GDLD ++SGDGRW+I W  V+CPG+     ++ +GS++++ K+Q R  + PV +L
Sbjct:   52 TVAMNSPQYYGSLTCGMCIQMTGEGVGSGADPIDGTFIVYVSDLCPECASGDLDVAQSGDGRWEIEWTAVDCPGNYGDLQYLGQGSNDFFLKVQVRNHRVPVSQL 156          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6272.17112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHU1_ECTSI8.250e-4662.62Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879... [more]
D8LRN1_ECTSI9.880e-4563.55Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D8LGP4_ECTSI4.040e-4263.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2V3ISL2_9FLOR1.780e-3958.88Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=... [more]
F2Z7J0_9FLOR1.060e-3756.19Uncharacterized protein n=1 Tax=Gracilariopsis and... [more]
A0A6H5KBW3_9PHAE3.800e-3760.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A1X6NJE1_PORUM1.860e-3553.77Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A2P6NBD6_9EUKA1.540e-3051.92Endochitinase-like n=1 Tax=Planoprotostelium fungi... [more]
A0A2P6NBF0_9EUKA1.570e-3051.92MAP/microtubule affinity-regulating kinase 3-like ... [more]
A0A7S4IRK7_9EUKA2.330e-3050.48Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6272contigF-serratus_M_contig6272:22737..23467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue5.1e-36
Seed eggNOG ortholog2880.D8LHU1
KEGG koko:K20628
Hectar predicted targeting categoryother localisation
EggNOG OGs2D16Q@1,2SGXE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931939.7438142-CDS-F-serratus_M_contig6272:22736..229401622931939.7438142-CDS-F-serratus_M_contig6272:22736..22940Fucus serratus maleCDSF-serratus_M_contig6272 22737..22940 -
1690964067.244562-CDS-F-serratus_M_contig6272:22736..229401690964067.244562-CDS-F-serratus_M_contig6272:22736..22940Fucus serratus maleCDSF-serratus_M_contig6272 22737..22940 -
1622931939.766567-CDS-F-serratus_M_contig6272:23302..234671622931939.766567-CDS-F-serratus_M_contig6272:23302..23467Fucus serratus maleCDSF-serratus_M_contig6272 23303..23467 -
1690964067.2628925-CDS-F-serratus_M_contig6272:23302..234671690964067.2628925-CDS-F-serratus_M_contig6272:23302..23467Fucus serratus maleCDSF-serratus_M_contig6272 23303..23467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6272.17112.1prot_F-serratus_M_contig6272.17112.1Fucus serratus malepolypeptideF-serratus_M_contig6272 22737..23467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6272.17112.1

>prot_F-serratus_M_contig6272.17112.1 ID=prot_F-serratus_M_contig6272.17112.1|Name=mRNA_F-serratus_M_contig6272.17112.1|organism=Fucus serratus male|type=polypeptide|length=123bp
PPPFSPPAWSIFYVCDLTVALNAAQYDGSELCGACIEGEGSGNGAGSDPI
TGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFMFE
GSHEYYWKIQPRGTKTPVVELMV
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mRNA from alignment at F-serratus_M_contig6272:22737..23467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6272.17112.1 ID=mRNA_F-serratus_M_contig6272.17112.1|Name=mRNA_F-serratus_M_contig6272.17112.1|organism=Fucus serratus male|type=mRNA|length=731bp|location=Sequence derived from alignment at F-serratus_M_contig6272:22737..23467- (Fucus serratus male)
CCTCCCCCCTTCTCCCCTCCTGCTTGGTCCATATTTTACGTTTGCGATCT CACAGTTGCGCTGAACGCCGCCCAGTACGATGGTTCGGAGTTGTGCGGCG CGTGTATCGAAGGCGAAGGATCAGGAAATGGCGCAGGCAGTGATCCCATC ACTGGATCCTTCAAGGTGCGCCATTGAAGCGTCGTCGTCCGGGGTCTGTT GCGATTTGGTGGACGTCGTATTTTCACTTGGTATTTATTGGGGAGAATCG TGTCTCTCCTTGTTTCTAGACATGAAAGTGTTCATTTGGTCGTCTCTTTC CCTCGGCAATCTCTTTCAAGTGAGTCCGAAACGTGGCAATGCAAGCATGA GTGGATATGGTGTACGTTTGAGAGCCTCATGTAAGTCGTCGTAGAATAGT GAACGCCGCCAGCTGGCGGAAGAAACGCTGTACGCGACACAACTGTCTCA AAACAAATATTGGTTTATCGACCCCACAGAACACGCTCTCTCTTGTCTAA ACTATGGGCGCGACGACCTCGATTCAGGCGTACGTGATGGACAAGTGTCC TGAGTGCGCGACTGGTGACCTCGACTTCTCCAAGAGCGGGGATGGCCGCT GGGATATTTCCTGGAAGTTTGTAGAGTGCCCCGGTTCCGACACACCAAGC TTCATGTTCGAGGGCAGCCACGAGTACTACTGGAAAATCCAGCCACGTGG AACTAAAACTCCCGTGGTAGAGCTGATGGTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6272:22737..23467-

>mRNA_F-serratus_M_contig6272.17112.1 ID=mRNA_F-serratus_M_contig6272.17112.1|Name=mRNA_F-serratus_M_contig6272.17112.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig6272:22737..23467- (Fucus serratus male)
CCTCCCCCCTTCTCCCCTCCTGCTTGGTCCATATTTTACGTTTGCGATCT
CACAGTTGCGCTGAACGCCGCCCAGTACGATGGTTCGGAGTTGTGCGGCG
CGTGTATCGAAGGCGAAGGATCAGGAAATGGCGCAGGCAGTGATCCCATC
ACTGGATCCTTCAAGCCTCCCCCCTTCTCCCCTCCTGCTTGGTCCATATT
TTACGTTTGCGATCTCACAGTTGCGCTGAACGCCGCCCAGTACGATGGTT
CGGAGTTGTGCGGCGCGTGTATCGAAGGCGAAGGATCAGGAAATGGCGCA
GGCAGTGATCCCATCACTGGATCCTTCAAGGCGTACGTGATGGACAAGTG
TCCTGAGTGCGCGACTGGTGACCTCGACTTCTCCAAGAGCGGGGATGGCC
GCTGGGATATTTCCTGGAAGTTTGTAGAGTGCCCCGGTTCCGACACACCA
AGCTTCATGTTCGAGGGCAGCCACGAGTACTACTGGAAAATCCAGCCACG
TGGAACTAAAACTCCCGTGGTAGAGCTGATGGTAGCGTACGTGATGGACA
AGTGTCCTGAGTGCGCGACTGGTGACCTCGACTTCTCCAAGAGCGGGGAT
GGCCGCTGGGATATTTCCTGGAAGTTTGTAGAGTGCCCCGGTTCCGACAC
ACCAAGCTTCATGTTCGAGGGCAGCCACGAGTACTACTGGAAAATCCAGC
CACGTGGAACTAAAACTCCCGTGGTAGAGCTGATGGTA
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