mRNA_F-serratus_M_contig6270.17111.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6270.17111.1
Unique NamemRNA_F-serratus_M_contig6270.17111.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: D8LT13_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT13_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 7.970e-30
Identity = 53/79 (67.09%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 LPDLIAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            LP+L+AKL +I+A+GG DFPED+AGGLKLA+E L W+  +RLCILIADAPCHG++YH+G+GDR+P G   G DPSK+LY
Sbjct:  846 LPELLAKLNKIEAYGGDDFPEDVAGGLKLATE-LDWRGTIRLCILIADAPCHGSIYHAGVGDRYPNGCPKGNDPSKLLY 923          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.030e-29
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 LPDLIAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            LP L AKL +IKA+GG DFPED+AGGLKLA+E L W+  +RLCIL+ADAPCHG+MYH G+GDR+P G   G DPSK+LY
Sbjct:  973 LPKLRAKLNKIKAYGGADFPEDVAGGLKLATE-LDWRGTIRLCILLADAPCHGSMYHIGIGDRYPNGCPKGNDPSKLLY 1050          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.470e-28
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 LPDLIAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            L  L+A L +I A+GG DFPED+AGGLKLA+E L W+ N+RLCIL+ADAPCHG++YH G+GDR+P G  +G DPSK+LY
Sbjct:  937 LSKLLAALNKIMAYGGKDFPEDLAGGLKLATE-LDWRGNIRLCILLADAPCHGSIYHIGVGDRYPNGCPNGNDPSKLLY 1014          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: A0A6H5KZ40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ40_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.080e-25
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 LPDLIAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            L  L  KL++IKA+GG DFPED+AGGLKLA+E L W+ N+RLCIL+ADAPCHGN++H+G GD FP     G DP+K+LY
Sbjct:  512 LHKLTKKLEKIKAYGGQDFPEDVAGGLKLATE-LVWRGNIRLCILLADAPCHGNVHHTGAGDMFPNCCPMGNDPAKLLY 589          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: D8LT14_ECTSI (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT14_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.780e-23
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 LPDLIAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            +P L+ KL RIKA GG D PED+AGGL+ A++ LSW+S +RLC+LIADAPCHG+MYHS   D +P G   GLDPSK+LY
Sbjct:  890 IPQLLEKLNRIKATGGKDVPEDIAGGLQNATQ-LSWESPIRLCMLIADAPCHGSMYHS-CRDNYPTGCPKGLDPSKLLY 966          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: A0A6H5KWB6_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWB6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.850e-20
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 LPDLIAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            LP L AKLK+I+A GG  +  D+AGGLK A+  LSW S VRLCIL ADAPCHG MYH  + D++P G   G+DPS M+Y
Sbjct:  998 LPQLEAKLKKIRAGGGCGYVADVAGGLKHATT-LSWSSPVRLCILFADAPCHGKMYHD-VPDQYPKGCPEGVDPSNMIY 1074          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: A0A1Y1IRD1_KLENI (Alpha-kinase family protein containing von Willebrand factor type A domain n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRD1_KLENI)

HSP 1 Score: 75.5 bits (184), Expect = 3.800e-14
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   13 IAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKML 234
            +  L R++A GG D PED+  GL+ A+  L W++  RL + IADAPCHG  +HSGL D +PGGD  G   + +L
Sbjct:  271 VTALARVRAMGGDDAPEDVFTGLERAAA-LGWRAQGRLLVHIADAPCHGTDFHSGLSDNYPGGDTRGRSAAALL 343          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: A0A5J4XCH7_9CHLO (MHCK EF2 kinase domain family n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XCH7_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 1.300e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   28 RIKAFGGTDFPEDMAGGLKLASEGLS-----WKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            +I+A GG D PED+AG L+ A + L      +++  R+ I  ADAPCHG+ YHS + D +PGGD HGL+P KML+
Sbjct:  360 KIRANGGADGPEDIAGALQTALDLLKDRVQGFRAQTRMIIHFADAPCHGSQYHS-MHDDYPGGDPHGLNPEKMLH 433          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: Q22UE9_TETTS (Mhck/ef2 kinase domain protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22UE9_TETTS)

HSP 1 Score: 68.2 bits (165), Expect = 1.430e-11
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   22 LKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKMLY 237
            +  +KA GG D PED+AG L+ A     WKS  +  I+I DAPCHG+ YH+   D +P G  +G+D  + +Y
Sbjct:  113 ISSLKATGGGDEPEDLAGALETAINLFEWKSQAKTMIIITDAPCHGDTYHNS-NDHYPQGCPNGIDIEEYIY 183          
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Match: A0A7S0F700_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F700_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.400e-10
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   31 IKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAPCHGNMYHSGLGDRFPGGDKHGLDPSKML 234
            I+A GG D PEDMAGG++ A+  LSW+   R+  ++AD PCHG  +HS LGD  P G   G+D  K L
Sbjct:  234 IRASGGGDTPEDMAGGIQHANA-LSWRQATRVAFIVADCPCHGREFHS-LGDDHPNGTP-GIDIKKEL 298          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6270.17111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT13_ECTSI7.970e-3067.09VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KL16_9PHAE2.030e-2968.35VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FWV2_ECTSI8.470e-2864.56VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KZ40_9PHAE1.080e-2563.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT14_ECTSI1.780e-2363.29VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KWB6_9PHAE5.850e-2059.49VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1Y1IRD1_KLENI3.800e-1447.30Alpha-kinase family protein containing von Willebr... [more]
A0A5J4XCH7_9CHLO1.300e-1349.33MHCK EF2 kinase domain family n=1 Tax=Trebouxia sp... [more]
Q22UE9_TETTS1.430e-1143.06Mhck/ef2 kinase domain protein n=1 Tax=Tetrahymena... [more]
A0A7S0F700_9STRA4.400e-1050.00Hypothetical protein n=2 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6270contigF-serratus_M_contig6270:17848..18332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D8LT13
Hectar predicted targeting categoryother localisation
EggNOG free text desc.von Willebrand factor (vWF) type A domain
EggNOG OGs2DNG0@1,2S673@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size239
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931939.4846022-CDS-F-serratus_M_contig6270:17849..180401622931939.4846022-CDS-F-serratus_M_contig6270:17849..18040Fucus serratus maleCDSF-serratus_M_contig6270 17850..18040 -
1690964067.1248486-CDS-F-serratus_M_contig6270:17849..180401690964067.1248486-CDS-F-serratus_M_contig6270:17849..18040Fucus serratus maleCDSF-serratus_M_contig6270 17850..18040 -
1622931939.5073175-CDS-F-serratus_M_contig6270:18286..183321622931939.5073175-CDS-F-serratus_M_contig6270:18286..18332Fucus serratus maleCDSF-serratus_M_contig6270 18287..18332 -
1690964067.1410034-CDS-F-serratus_M_contig6270:18286..183321690964067.1410034-CDS-F-serratus_M_contig6270:18286..18332Fucus serratus maleCDSF-serratus_M_contig6270 18287..18332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6270.17111.1prot_F-serratus_M_contig6270.17111.1Fucus serratus malepolypeptideF-serratus_M_contig6270 17850..18332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6270.17111.1

>prot_F-serratus_M_contig6270.17111.1 ID=prot_F-serratus_M_contig6270.17111.1|Name=mRNA_F-serratus_M_contig6270.17111.1|organism=Fucus serratus male|type=polypeptide|length=79bp
LPDLIAKLKRIKAFGGTDFPEDMAGGLKLASEGLSWKSNVRLCILIADAP
CHGNMYHSGLGDRFPGGDKHGLDPSKMLY
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mRNA from alignment at F-serratus_M_contig6270:17848..18332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6270.17111.1 ID=mRNA_F-serratus_M_contig6270.17111.1|Name=mRNA_F-serratus_M_contig6270.17111.1|organism=Fucus serratus male|type=mRNA|length=485bp|location=Sequence derived from alignment at F-serratus_M_contig6270:17848..18332- (Fucus serratus male)
CTGCCTGACCTCATCGCCAAGCTCAAGCGCATCAAAGCATTTGGAGGTAC CACTCCTCGTCTTGATTCTAGGTGTAGATCAAACCTCCCTTCGTGCTTGG CACTTTTGTTTTTTATGTATTTTTGACGTGGGCGGCTAAGTGGGAGTACA TCAGGGCACCTCTAAATTCACCCGGAATCGAGGGACACGTAGTACAAAAT ATTGGCAAACTGTATCACGATGAGACGTGCCTCAGCTAACCTGAAACACG AAATCCAGGATCTTCCTTTCCCCGTCGCCTCTTTTCACCTAGGTACGGAC TTCCCCGAAGACATGGCCGGCGGGCTCAAGCTTGCCTCTGAGGGGCTTTC GTGGAAAAGCAACGTTCGTCTGTGCATTCTCATTGCCGACGCCCCCTGTC ATGGTAACATGTACCACAGCGGTCTCGGGGACCGTTTTCCGGGTGGAGAC AAGCATGGGTTGGACCCGTCGAAAATGCTTTACAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6270:17848..18332-

>mRNA_F-serratus_M_contig6270.17111.1 ID=mRNA_F-serratus_M_contig6270.17111.1|Name=mRNA_F-serratus_M_contig6270.17111.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig6270:17848..18332- (Fucus serratus male)
CTGCCTGACCTCATCGCCAAGCTCAAGCGCATCAAAGCATTTGGAGCTGC
CTGACCTCATCGCCAAGCTCAAGCGCATCAAAGCATTTGGAGGTACGGAC
TTCCCCGAAGACATGGCCGGCGGGCTCAAGCTTGCCTCTGAGGGGCTTTC
GTGGAAAAGCAACGTTCGTCTGTGCATTCTCATTGCCGACGCCCCCTGTC
ATGGTAACATGTACCACAGCGGTCTCGGGGACCGTTTTCCGGGTGGAGAC
AAGCATGGGTTGGACCCGTCGAAAATGCTTTACGTACGGACTTCCCCGAA
GACATGGCCGGCGGGCTCAAGCTTGCCTCTGAGGGGCTTTCGTGGAAAAG
CAACGTTCGTCTGTGCATTCTCATTGCCGACGCCCCCTGTCATGGTAACA
TGTACCACAGCGGTCTCGGGGACCGTTTTCCGGGTGGAGACAAGCATGGG
TTGGACCCGTCGAAAATGCTTTAC
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