mRNA_F-serratus_M_contig626.17101.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig626.17101.1
Unique NamemRNA_F-serratus_M_contig626.17101.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A5D6Y8Z1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8Z1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.790e-6
Identity = 45/166 (27.11%), Postives = 72/166 (43.37%), Query Frame = 1
Query:    4 DETALMAEGA-YQNFCFDTGASGHMSPDSTGMTNFRQCNKVL--VVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGNLYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINTYHRTTGH 492
            +E   MA  A    +  D+GA+ HMSP+S+     R  ++++   VANGA +     G++ V    G    S  L DV ++P L   L S++ +   G       +   +K        VP+VGN+Y      + D    A  V+  G  P+   +   +H   GH
Sbjct:  532 EEITFMATVAPADGWLIDSGATSHMSPESSDFAALRPLSEMIKVTVANGAFVTASEVGDVVVALPGGR---SATLKDVLYIPGLGRRLLSVQKMAAHGLVVEFGERACKIKRGDKVVMAVPKVGNIY------RLDGDAQAAMVVEHGPHPS---ERELWHARLGH 685          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A4Y1ZP29_ARAVE (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZP29_ARAVE)

HSP 1 Score: 55.8 bits (133), Expect = 5.590e-6
Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = 1
Query:   49 FDTGASGHMSPDSTGMTNFRQCN--KVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSG-ATFLVPEVGNLYW 378
            FDT A+ H S D   M N+R     +V V   G   P+EG G + +EF    +  ++ L++V + P L  +L S   + K G+ +V +   + +  K G   F     G LY+
Sbjct:  282 FDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKLFYAKRQGGLYY 394          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A4Y2NTP2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NTP2_ARAVE)

HSP 1 Score: 55.8 bits (133), Expect = 6.280e-6
Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = 1
Query:   49 FDTGASGHMSPDSTGMTNFRQCN--KVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSG-ATFLVPEVGNLYW 378
            FDT A+ H S D   M N+R     +V V   G   P+EG G + +EF    +  ++ L++V + P L  +L S   + K G+ +V +   + +  K G   F     G LY+
Sbjct:  282 FDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKLFYAKRQGGLYY 394          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A1M2V6B5_TRAPU (Copia protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V6B5_TRAPU)

HSP 1 Score: 55.5 bits (132), Expect = 9.050e-6
Identity = 54/169 (31.95%), Postives = 73/169 (43.20%), Query Frame = 1
Query:    7 ETALMA--EGAYQNFCFDTGASGHMSPDSTGMTNFRQ-CNKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVK--RGYTYVGDSKGITLKLKSGATFLV-PEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINTYHRTTGH 492
            +TA  A  + A + F FD+GAS H+SP             + +   NG+ I   G G + +    G   I   L    HVP  S  L S+R++     GY    DSKG+TL+ +SGA F     VG  LY   G      P    + L     PT    + T+HR  GH
Sbjct:  429 DTAYSAGPDAAVEPFLFDSGASTHLSPVRGDFFELVPIAPRGIRGVNGSVIYATGIGKIRLSLGRGKHLI---LDHALHVPAASVRLISVRALCDGPHGYIVGFDSKGVTLRHRSGAAFFTGTRVGRGLYALSG-----SPPAVDSALAVSLAPT----LETWHRRLGH 585          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V0Z3_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0Z3_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 9.150e-6
Identity = 47/159 (29.56%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINT------YHRTTGH 492
            F  DTGAS HM+P  + +TN R    N  +   NGAQ      G++ +E   G       + DV ++P  +  LFS+    ++GYT+   + G T+   S      P   N +Y+  G              T GA PTT     T      +HR+ GH
Sbjct:  337 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSISYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEGRLAP----------TSGA-PTTAYAARTVETPHLWHRSLGH 481          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 9.260e-6
Identity = 43/153 (28.10%), Postives = 64/153 (41.83%), Query Frame = 1
Query:   43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINTYHRTTGH 492
            F  DTGAS HM+P  + +TN R    N  +   NGAQ      G++ +E   G       + DV ++P  +  LFS+    ++GYT+   + G T+   S      P   N +Y+  G       D      T      T    + +HR  GH
Sbjct:  285 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG-----RLDPTSGAPTTAYAARTAETPHLWHRRLGH 429          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V117_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V117_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.250e-5
Identity = 47/159 (29.56%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRGLRKKDEPDLACAVLTPGAMPTTGVDINT------YHRTTGH 492
            F  DTGAS HM+P  + +TN R    N  +   NGAQ      G++ +E   G       + DV ++P  +  LFS+    ++GYT+   + G T+   S      P   N +Y+  G              T GA PTT     T      +HR+ GH
Sbjct:  213 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEGRLAP----------TSGA-PTTAYAARTVETPHLWHRSLGH 357          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6UYW3_9CHLO (Retrotransposon with Ribonuclease H-like superfamily and integrase domain n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYW3_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.160e-5
Identity = 36/118 (30.51%), Postives = 55/118 (46.61%), Query Frame = 1
Query:   43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRG 387
            F  DTGAS HM+P  + +TN R    N  +   NGAQ      G++ +E   G       + DV ++P  +  LFS+    ++GYT+   + G T+   S      P   N +Y+  G
Sbjct:  277 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG 391          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V0X0_9CHLO (Gag-Pol poly n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0X0_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.180e-5
Identity = 37/118 (31.36%), Postives = 57/118 (48.31%), Query Frame = 1
Query:   43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRG 387
            F  DTGAS HM+P  + +TN R    N  +   NGAQ      G++ +E     D I+  + DV ++P  +  LFS+    ++GYT+   + G T+   S      P   N +Y+  G
Sbjct:  386 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLEL--APDRIAT-ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG 500          
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Match: A0A2P6V0G0_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0G0_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.230e-5
Identity = 36/118 (30.51%), Postives = 55/118 (46.61%), Query Frame = 1
Query:   43 FCFDTGASGHMSPDSTGMTNFRQC--NKVLVVANGAQIPIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYVGDSKGITLKLKSGATFLVPEVGN-LYWSRG 387
            F  DTGAS HM+P  + +TN R    N  +   NGAQ      G++ +E   G       + DV ++P  +  LFS+    ++GYT+   + G T+   S      P   N +Y+  G
Sbjct:  385 FVLDTGASRHMTPLKSALTNLRPPPDNLTVTFGNGAQAEPTAVGDIHLELAPGRIAT---ITDVLYLPTAAESLFSVSYAAQKGYTFSFGADGCTIYRHSTTVATAPATANNIYYLEG 499          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig626.17101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A5D6Y8Z1_9STRA4.790e-627.11Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A4Y1ZP29_ARAVE5.590e-630.09gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A4Y2NTP2_ARAVE6.280e-630.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V6B5_TRAPU9.050e-631.95Copia protein n=1 Tax=Trametes pubescens TaxID=154... [more]
A0A2P6V0Z3_9CHLO9.150e-629.56Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UZ08_9CHLO9.260e-628.10Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6V117_9CHLO1.250e-529.56Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID... [more]
A0A2P6UYW3_9CHLO2.160e-530.51Retrotransposon with Ribonuclease H-like superfami... [more]
A0A2P6V0X0_9CHLO2.180e-531.36Gag-Pol poly n=3 Tax=Micractinium conductrix TaxID... [more]
A0A2P6V0G0_9CHLO2.230e-530.51Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig626contigF-serratus_M_contig626:236902..237423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931936.2971084-CDS-F-serratus_M_contig626:236901..2374231622931936.2971084-CDS-F-serratus_M_contig626:236901..237423Fucus serratus maleCDSF-serratus_M_contig626 236902..237423 +
1690964065.3623502-CDS-F-serratus_M_contig626:236901..2374231690964065.3623502-CDS-F-serratus_M_contig626:236901..237423Fucus serratus maleCDSF-serratus_M_contig626 236902..237423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig626.17101.1prot_F-serratus_M_contig626.17101.1Fucus serratus malepolypeptideF-serratus_M_contig626 236902..237423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig626.17101.1

>prot_F-serratus_M_contig626.17101.1 ID=prot_F-serratus_M_contig626.17101.1|Name=mRNA_F-serratus_M_contig626.17101.1|organism=Fucus serratus male|type=polypeptide|length=174bp
MDETALMAEGAYQNFCFDTGASGHMSPDSTGMTNFRQCNKVLVVANGAQI
PIEGYGNLAVEFDNGTDTISLELIDVAHVPFLSYHLFSLRSVVKRGYTYV
GDSKGITLKLKSGATFLVPEVGNLYWSRGLRKKDEPDLACAVLTPGAMPT
TGVDINTYHRTTGHTHPLLLKKSA
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mRNA from alignment at F-serratus_M_contig626:236902..237423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig626.17101.1 ID=mRNA_F-serratus_M_contig626.17101.1|Name=mRNA_F-serratus_M_contig626.17101.1|organism=Fucus serratus male|type=mRNA|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig626:236902..237423+ (Fucus serratus male)
ATGGACGAGACGGCGTTGATGGCTGAGGGAGCGTACCAGAATTTCTGCTT CGACACCGGAGCCTCTGGTCACATGTCTCCGGATAGCACTGGCATGACTA ATTTCCGCCAGTGTAACAAGGTCCTTGTCGTAGCAAACGGCGCACAAATT CCTATCGAAGGATACGGCAACCTCGCAGTTGAATTCGATAATGGGACCGA CACCATTTCCCTAGAGCTAATCGACGTGGCACATGTACCGTTCCTGAGCT ACCACCTGTTCTCCCTTCGCTCGGTGGTGAAGAGAGGCTACACCTACGTG GGTGATTCAAAGGGGATCACTCTCAAGCTCAAATCGGGTGCGACTTTCTT GGTCCCCGAAGTTGGCAACCTTTACTGGTCCCGTGGTTTGAGGAAGAAGG ATGAACCGGACCTGGCGTGTGCTGTACTCACCCCGGGCGCCATGCCCACT ACGGGCGTAGATATCAACACCTACCATCGAACCACCGGTCATACTCACCC CCTGTTACTGAAGAAATCTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig626:236902..237423+

>mRNA_F-serratus_M_contig626.17101.1 ID=mRNA_F-serratus_M_contig626.17101.1|Name=mRNA_F-serratus_M_contig626.17101.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig626:236902..237423+ (Fucus serratus male)
ATGGACGAGACGGCGTTGATGGCTGAGGGAGCGTACCAGAATTTCTGCTT
CGACACCGGAGCCTCTGGTCACATGTCTCCGGATAGCACTGGCATGACTA
ATTTCCGCCAGTGTAACAAGGTCCTTGTCGTAGCAAACGGCGCACAAATT
CCTATCGAAGGATACGGCAACCTCGCAGTTGAATTCGATAATGGGACCGA
CACCATTTCCCTAGAGCTAATCGACGTGGCACATGTACCGTTCCTGAGCT
ACCACCTGTTCTCCCTTCGCTCGGTGGTGAAGAGAGGCTACACCTACGTG
GGTGATTCAAAGGGGATCACTCTCAAGCTCAAATCGGGTGCGACTTTCTT
GGTCCCCGAAGTTGGCAACCTTTACTGGTCCCGTGGTTTGAGGAAGAAGG
ATGAACCGGACCTGGCGTGTGCTGTACTCACCCCGGGCGCCATGCCCACT
ACGGGCGTAGATATCAACACCTACCATCGAACCACCGGTCATACTCACCC
CCTGTTACTGAAGAAATCTGCGATGGACGAGACGGCGTTGATGGCTGAGG
GAGCGTACCAGAATTTCTGCTTCGACACCGGAGCCTCTGGTCACATGTCT
CCGGATAGCACTGGCATGACTAATTTCCGCCAGTGTAACAAGGTCCTTGT
CGTAGCAAACGGCGCACAAATTCCTATCGAAGGATACGGCAACCTCGCAG
TTGAATTCGATAATGGGACCGACACCATTTCCCTAGAGCTAATCGACGTG
GCACATGTACCGTTCCTGAGCTACCACCTGTTCTCCCTTCGCTCGGTGGT
GAAGAGAGGCTACACCTACGTGGGTGATTCAAAGGGGATCACTCTCAAGC
TCAAATCGGGTGCGACTTTCTTGGTCCCCGAAGTTGGCAACCTTTACTGG
TCCCGTGGTTTGAGGAAGAAGGATGAACCGGACCTGGCGTGTGCTGTACT
CACCCCGGGCGCCATGCCCACTACGGGCGTAGATATCAACACCTACCATC
GAACCACCGGTCATACTCACCCCCTGTTACTGAAGAAATCTGCG
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