mRNA_F-serratus_M_contig625.17096.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig625.17096.1
Unique NamemRNA_F-serratus_M_contig625.17096.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig625.17096.1 vs. uniprot
Match: D7FPD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD0_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 3.190e-41
Identity = 79/178 (44.38%), Postives = 112/178 (62.92%), Query Frame = 1 
Query:    1 RRTFWATAGLGWVVWVLSVSSAADQKW--MTSGSFGLGIKDVTKACDSPFANESACEAYDAFVATQTLATVMCSVAVAIYTIAFFRPFEAKIGSTKVLGLMGGVLMAFASFFQMLAFIFAAKRVQKNNEDLGESLF-ENGPTYDVGVTTFVFGSVQAILILLTFKATGDGPLLPILRR 525
            R+ +W   G GWVVWVL+  +A D+ W  + +G  G G+     ACD    N+S C A+  F A Q  ATVMCSVAV ++T++FFRP +A+ GS+K LGL+GGV MA  +F QM++ +F  K +Q+ N   G++   + G TY +G+T FVFG +Q I++L  F    +GPLL   RR
Sbjct:   23 RKVYWFGCGFGWVVWVLTTPAAGDENWGELPAGD-GYGVA-TGFACDEGDVNDSFCTAHRNFAAAQKAATVMCSVAVLLFTVSFFRPSQARYGSSKGLGLVGGVFMALFTFCQMVSILFLVKSIQEYNRYGGDAFMAKTGDTYGLGITAFVFGLIQVIIVLGFFGQAANGPLLSCTRR 198
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BLAST of mRNA_F-serratus_M_contig625.17096.1 vs. uniprot
Match: A0A6H5KLK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK4_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.330e-26
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:  178 FVATQTLATVMCSVAVAIYTIAFFRPFEAKIGSTKVLGLMGGVLMAFASFFQMLAFIFAAKRVQKNNEDLGESLFE--NGPTYDVGVTTFVFGSVQAILILLTFKATGDGPLLPILRR 525
            F A Q  ATVMCSVAV ++T++FFRP  A+ GS+K  GL+GGV MA  +FFQM++ +F  K +Q+ N   G   FE   G TY +G+T FVFG +Q I++L  F    +GPLL   RR
Sbjct:    9 FAAAQKAATVMCSVAVLLFTVSFFRPSHARHGSSKGFGLVGGVFMALFTFFQMVSILFLVKSIQEYNR-YGGGAFEAKTGDTYGLGMTAFVFGLIQVIIVLGFFGQAANGPLLSCTRR 125
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig625.17096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPD0_ECTSI3.190e-4144.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLK4_9PHAE5.330e-2649.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig625contigF-serratus_M_contig625:429415..430637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size525
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig625.17096.1prot_F-serratus_M_contig625.17096.1Fucus serratus malepolypeptideF-serratus_M_contig625 429415..430637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931935.7659147-CDS-F-serratus_M_contig625:429414..4295831622931935.7659147-CDS-F-serratus_M_contig625:429414..429583Fucus serratus maleCDSF-serratus_M_contig625 429415..429583 +
1690964065.1446667-CDS-F-serratus_M_contig625:429414..4295831690964065.1446667-CDS-F-serratus_M_contig625:429414..429583Fucus serratus maleCDSF-serratus_M_contig625 429415..429583 +
1622931935.793384-CDS-F-serratus_M_contig625:429920..4301241622931935.793384-CDS-F-serratus_M_contig625:429920..430124Fucus serratus maleCDSF-serratus_M_contig625 429921..430124 +
1690964065.1549695-CDS-F-serratus_M_contig625:429920..4301241690964065.1549695-CDS-F-serratus_M_contig625:429920..430124Fucus serratus maleCDSF-serratus_M_contig625 429921..430124 +
1622931935.8165133-CDS-F-serratus_M_contig625:430485..4306371622931935.8165133-CDS-F-serratus_M_contig625:430485..430637Fucus serratus maleCDSF-serratus_M_contig625 430486..430637 +
1690964065.1692803-CDS-F-serratus_M_contig625:430485..4306371690964065.1692803-CDS-F-serratus_M_contig625:430485..430637Fucus serratus maleCDSF-serratus_M_contig625 430486..430637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig625.17096.1

>prot_F-serratus_M_contig625.17096.1 ID=prot_F-serratus_M_contig625.17096.1|Name=mRNA_F-serratus_M_contig625.17096.1|organism=Fucus serratus male|type=polypeptide|length=175bp
RRTFWATAGLGWVVWVLSVSSAADQKWMTSGSFGLGIKDVTKACDSPFAN
ESACEAYDAFVATQTLATVMCSVAVAIYTIAFFRPFEAKIGSTKVLGLMG
GVLMAFASFFQMLAFIFAAKRVQKNNEDLGESLFENGPTYDVGVTTFVFG
SVQAILILLTFKATGDGPLLPILRR
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mRNA from alignment at F-serratus_M_contig625:429415..430637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig625.17096.1 ID=mRNA_F-serratus_M_contig625.17096.1|Name=mRNA_F-serratus_M_contig625.17096.1|organism=Fucus serratus male|type=mRNA|length=1223bp|location=Sequence derived from alignment at F-serratus_M_contig625:429415..430637+ (Fucus serratus male)
CGCAGAACTTTCTGGGCAACCGCCGGACTGGGTTGGGTCGTCTGGGTTTT
ATCGGTCTCGTCCGCGGCAGACCAAAAATGGATGACGTCTGGCAGCTTTG
GGCTAGGTATCAAGGACGTCACCAAAGCCTGCGACAGTCCATTCGCGAAT
GAATCCGCCTGTGAAGCCTGTGAGAGCCGCAAATTCCTGGAAAGCTTGCG
CATGGTCTTTGGAAGGGTCAAAACATAATCTTGTTACATTTCCACACGCT
AGCGAATCAGCGTTAGGCTCTGGTGTGGTGCGACTTTACGGCACCCTTTG
CTTCTCGCGTCCAAGAGGCTGCAGGCGCCCCATTCTTCCATAATACCAGT
CTGTGAAGCAAATCAACGAGGTACATTTGTTGTGGACTTGTCCTGCCTGG
TCTACAGCCACGCAACGGACGCAACCCGCGACTTGTGGCTGTCCCTGGTT
GATCACAACGCTAAAATGACAAGCCCTCCTTTGAATATTCCAACGTGTAC
TTGCAGATGACGCCTTCGTCGCGACCCAGACTCTTGCCACCGTCATGTGC
TCGGTAGCTGTGGCCATTTATACGATCGCCTTCTTCCGGCCGTTCGAGGC
CAAAATCGGTTCGACCAAGGTCCTCGGCTTGATGGGTGGCGTCCTCATGG
CTTTCGCGAGCTTCTTCCAGATGTTGGCATTCATCTTCGCGGCCAAGCGG
GTGCAGAAGAGTGAGTGATGCCTTTCCTTGGAAGTTAATGCCCAATCGAC
AGTCCGTAGTTTCACCAATTACATCCTTCCTCGCGATATCCGTTGCCACC
GACAGCTGTGGAGGGACGTATAAACCACCCCTTCCGTCGATTCGCCTCGT
GAATTGCCTCGGCATGGGGAACAATAGCCTTTATGGTCGACTTGCCGTGT
AAAACCGATTTCTGCAGCATAATTGCGGTAATCGAGATGCCCAACATCTT
CCATTCTGGAAACATTCTTGCAGCTTCACCACACACTCCGCCAAAATCTT
CGTGTCTGTCTTACCATAGCCCTGTATCATATTTCATGCGTTGTCGTCGA
ATTCTGACCCGGGTTGGTCAGACAACGAGGATTTGGGAGAAAGCTTGTTC
GAGAATGGCCCGACCTACGACGTGGGGGTGACAACATTCGTCTTCGGCTC
TGTCCAGGCCATCCTCATACTCTTAACGTTCAAGGCCACCGGGGATGGCC
CTCTGCTACCGATCTTACGGAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig625:429415..430637+

>mRNA_F-serratus_M_contig625.17096.1 ID=mRNA_F-serratus_M_contig625.17096.1|Name=mRNA_F-serratus_M_contig625.17096.1|organism=Fucus serratus male|type=CDS|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig625:429415..430637+ (Fucus serratus male)
CGCAGAACTTTCTGGGCAACCGCCGGACTGGGTTGGGTCGTCTGGGTTTT
ATCGGTCTCGTCCGCGGCAGACCAAAAATGGATGACGTCTGGCAGCTTTG
GGCTAGGTATCAAGGACGTCACCAAAGCCTGCGACAGTCCATTCGCGAAT
GAATCCGCCTGTGAAGCCTCGCAGAACTTTCTGGGCAACCGCCGGACTGG
GTTGGGTCGTCTGGGTTTTATCGGTCTCGTCCGCGGCAGACCAAAAATGG
ATGACGTCTGGCAGCTTTGGGCTAGGTATCAAGGACGTCACCAAAGCCTG
CGACAGTCCATTCGCGAATGAATCCGCCTGTGAAGCCTATGACGCCTTCG
TCGCGACCCAGACTCTTGCCACCGTCATGTGCTCGGTAGCTGTGGCCATT
TATACGATCGCCTTCTTCCGGCCGTTCGAGGCCAAAATCGGTTCGACCAA
GGTCCTCGGCTTGATGGGTGGCGTCCTCATGGCTTTCGCGAGCTTCTTCC
AGATGTTGGCATTCATCTTCGCGGCCAAGCGGGTGCAGAAGAATGACGCC
TTCGTCGCGACCCAGACTCTTGCCACCGTCATGTGCTCGGTAGCTGTGGC
CATTTATACGATCGCCTTCTTCCGGCCGTTCGAGGCCAAAATCGGTTCGA
CCAAGGTCCTCGGCTTGATGGGTGGCGTCCTCATGGCTTTCGCGAGCTTC
TTCCAGATGTTGGCATTCATCTTCGCGGCCAAGCGGGTGCAGAAGAACAA
CGAGGATTTGGGAGAAAGCTTGTTCGAGAATGGCCCGACCTACGACGTGG
GGGTGACAACATTCGTCTTCGGCTCTGTCCAGGCCATCCTCATACTCTTA
ACGTTCAAGGCCACCGGGGATGGCCCTCTGCTACCGATCTTACGGAGAAC
AACGAGGATTTGGGAGAAAGCTTGTTCGAGAATGGCCCGACCTACGACGT
GGGGGTGACAACATTCGTCTTCGGCTCTGTCCAGGCCATCCTCATACTCT
TAACGTTCAAGGCCACCGGGGATGGCCCTCTGCTACCGATCTTACGGAGA
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