mRNA_F-serratus_M_contig6240.17091.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6240.17091.1
Unique NamemRNA_F-serratus_M_contig6240.17091.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 3.370e-69
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:   10 MAKTPSKKSAKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            MAKTPSKKSAKAPKKAG KK++NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.390e-62
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:   10 MAKTPSKKSAKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            MAKTPSKKSAKAPKKAG K K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.840e-62
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:   10 MAKTPSKKSAKAPKKAG-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            MAK PSKK+AKAPKKA  GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.260e-60
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:   10 MAKTPSKKSAKAPKKAG-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            MAK PSKK+AKAPKKA  GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 190 bits (482), Expect = 1.550e-60
Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   10 MAKTPSKKSAKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            MAKTPSKK+AKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.820e-60
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:   10 MAKTPSKKSAKAPKKAG--GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            MAKTPSKKSAKAPKK G  GK +  KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 189 bits (480), Expect = 3.340e-60
Identity = 100/116 (86.21%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:   10 MAKTPSKKSAKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            MAKTPSK+SAKAPKKA    KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 189 bits (479), Expect = 5.580e-60
Identity = 101/118 (85.59%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    4 IKMAKTPSKKSAKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            + MAKTPSKK+A APKKAGGK+ S KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    6 VTMAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 185 bits (470), Expect = 8.160e-58
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:   16 KTPSKKSAKAPKKAG-GKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 357
            KTPSK+SAKAPKKA  G  KS KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
[Close]
BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.550e-57
Identity = 97/114 (85.09%), Postives = 105/114 (92.11%), Query Frame = 1 
Query:    4 IKMAKTPSKKSAKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 345
            IKMAKTPSKKSA  PKKA   K++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    4 IKMAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6240.17091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI3.370e-6997.41Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA1.390e-6287.93Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA1.840e-6289.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA1.260e-6089.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU1.550e-6085.34Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA1.820e-6085.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
B7FWR8_PHATC3.340e-6086.21Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA5.580e-6085.59Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7R9ZTA9_9STRA8.160e-5886.09Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]
A0A7S2U5X6_9STRA7.550e-5785.09Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6240contigF-serratus_M_contig6240:14987..15346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.2
Seed ortholog evalue3.4e-53
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size360
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931934.631593-CDS-F-serratus_M_contig6240:14986..153371622931934.631593-CDS-F-serratus_M_contig6240:14986..15337Fucus serratus maleCDSF-serratus_M_contig6240 14987..15337 -
1690964064.4925945-CDS-F-serratus_M_contig6240:14986..153371690964064.4925945-CDS-F-serratus_M_contig6240:14986..15337Fucus serratus maleCDSF-serratus_M_contig6240 14987..15337 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931934.648816-UTR-F-serratus_M_contig6240:15337..153461622931934.648816-UTR-F-serratus_M_contig6240:15337..15346Fucus serratus maleUTRF-serratus_M_contig6240 15338..15346 -
1690964064.503812-UTR-F-serratus_M_contig6240:15337..153461690964064.503812-UTR-F-serratus_M_contig6240:15337..15346Fucus serratus maleUTRF-serratus_M_contig6240 15338..15346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6240.17091.1prot_F-serratus_M_contig6240.17091.1Fucus serratus malepolypeptideF-serratus_M_contig6240 14987..15337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6240.17091.1

>prot_F-serratus_M_contig6240.17091.1 ID=prot_F-serratus_M_contig6240.17091.1|Name=mRNA_F-serratus_M_contig6240.17091.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGGKKKSNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at F-serratus_M_contig6240:14987..15346-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6240.17091.1 ID=mRNA_F-serratus_M_contig6240.17091.1|Name=mRNA_F-serratus_M_contig6240.17091.1|organism=Fucus serratus male|type=mRNA|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig6240:14987..15346- (Fucus serratus male)
CCCATCAAAATGGCCAAGACTCCCTCGAAGAAGTCCGCCAAGGCCCCCAA
GAAGGCAGGAGGCAAGAAGAAGTCCAACAAGAGGACTGAATCATACTCTT
CTTACATCTACAAGGTGCTCAAGCAGGTTCACCCGGACACGGGTATTTCA
AAGCGCGGTATGTCCATCATGAATTCGTTCATCAACGATGTGTTCGAGCG
AGTCGCCGGCGAGTCGGGAAAGCTAACCCGCTACAACAAGAAGGCCACCC
TGTCTTCGCGGGAGGTGCAGACAGCGGTCCGACTCATGCTTCCTGGCGAG
CTCGCCAAGCACGCCGTGTCTGAGGGTACGAAGGCGGTCACCAAGTTCAC
CTCTTCCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6240:14987..15346-

>mRNA_F-serratus_M_contig6240.17091.1 ID=mRNA_F-serratus_M_contig6240.17091.1|Name=mRNA_F-serratus_M_contig6240.17091.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig6240:14987..15346- (Fucus serratus male)
ATGGCCAAGACTCCCTCGAAGAAGTCCGCCAAGGCCCCCAAGAAGGCAGG
AGGCAAGAAGAAGTCCAACAAGAGGACTGAATCATACTCTTCTTACATCT
ACAAGGTGCTCAAGCAGGTTCACCCGGACACGGGTATTTCAAAGCGCGGT
ATGTCCATCATGAATTCGTTCATCAACGATGTGTTCGAGCGAGTCGCCGG
CGAGTCGGGAAAGCTAACCCGCTACAACAAGAAGGCCACCCTGTCTTCGC
GGGAGGTGCAGACAGCGGTCCGACTCATGCTTCCTGGCGAGCTCGCCAAG
CACGCCGTGTCTGAGGGTACGAAGGCGGTCACCAAGTTCACCTCTTCCTG
AATGGCCAAGACTCCCTCGAAGAAGTCCGCCAAGGCCCCCAAGAAGGCAG
GAGGCAAGAAGAAGTCCAACAAGAGGACTGAATCATACTCTTCTTACATC
TACAAGGTGCTCAAGCAGGTTCACCCGGACACGGGTATTTCAAAGCGCGG
TATGTCCATCATGAATTCGTTCATCAACGATGTGTTCGAGCGAGTCGCCG
GCGAGTCGGGAAAGCTAACCCGCTACAACAAGAAGGCCACCCTGTCTTCG
CGGGAGGTGCAGACAGCGGTCCGACTCATGCTTCCTGGCGAGCTCGCCAA
GCACGCCGTGTCTGAGGGTACGAAGGCGGTCACCAAGTTCACCTCTTCCT
GA
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