mRNA_F-serratus_M_contig624.17084.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig624.17084.1
Unique NamemRNA_F-serratus_M_contig624.17084.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig624.17084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig624contigF-serratus_M_contig624:236582..237183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931932.0839126-CDS-F-serratus_M_contig624:236581..2371811622931932.0839126-CDS-F-serratus_M_contig624:236581..237181Fucus serratus maleCDSF-serratus_M_contig624 236582..237181 +
1690964063.479944-CDS-F-serratus_M_contig624:236581..2371811690964063.479944-CDS-F-serratus_M_contig624:236581..237181Fucus serratus maleCDSF-serratus_M_contig624 236582..237181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig624.17084.1prot_F-serratus_M_contig624.17084.1Fucus serratus malepolypeptideF-serratus_M_contig624 236582..237181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig624.17084.1

>prot_F-serratus_M_contig624.17084.1 ID=prot_F-serratus_M_contig624.17084.1|Name=mRNA_F-serratus_M_contig624.17084.1|organism=Fucus serratus male|type=polypeptide|length=200bp
AFGKQKRSVGFLDQHKQENTVALAEEGRKGECLKREVEVSMEKVHEHASA
LEEKERRLAYSERLRLEVVANLADVQRRHVETLKGKEHKTLCMEKNVEKL
KCKIDKLVGEIGCFENLMTQAQEQHASAVDEEQQKVKRLEKEVHRLKQAR
AQMKRKEPLEYHKMRLERRLADEQQRAERLEREFEKSKGEAEVMKHEIEE
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mRNA from alignment at F-serratus_M_contig624:236582..237183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig624.17084.1 ID=mRNA_F-serratus_M_contig624.17084.1|Name=mRNA_F-serratus_M_contig624.17084.1|organism=Fucus serratus male|type=mRNA|length=602bp|location=Sequence derived from alignment at F-serratus_M_contig624:236582..237183+ (Fucus serratus male)
GCCTTCGGCAAGCAGAAGCGGAGCGTGGGATTTTTGGATCAGCACAAGCA
AGAAAATACCGTGGCACTCGCAGAGGAAGGGCGGAAAGGGGAATGCTTGA
AACGCGAGGTGGAAGTCTCGATGGAGAAGGTACATGAACACGCCTCGGCG
CTCGAGGAGAAGGAGCGAAGACTGGCGTACTCGGAGCGCCTGCGTTTGGA
AGTCGTCGCCAACTTGGCAGACGTACAGCGGCGACATGTCGAGACTCTGA
AAGGGAAGGAGCACAAGACGTTGTGCATGGAGAAGAACGTGGAGAAGTTG
AAGTGCAAGATAGACAAACTTGTTGGCGAAATTGGCTGCTTTGAGAACTT
GATGACGCAAGCGCAGGAACAGCACGCTTCAGCTGTCGACGAAGAGCAGC
AGAAGGTGAAGCGCTTGGAGAAGGAGGTGCACCGCTTGAAGCAAGCAAGA
GCACAGATGAAACGCAAAGAGCCGCTCGAGTACCACAAGATGCGCTTGGA
GAGACGTCTCGCTGACGAGCAGCAGAGGGCAGAGCGTCTGGAGAGGGAGT
TCGAGAAATCAAAGGGGGAGGCAGAGGTAATGAAACACGAGATTGAGGAG
CT
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Coding sequence (CDS) from alignment at F-serratus_M_contig624:236582..237183+

>mRNA_F-serratus_M_contig624.17084.1 ID=mRNA_F-serratus_M_contig624.17084.1|Name=mRNA_F-serratus_M_contig624.17084.1|organism=Fucus serratus male|type=CDS|length=1200bp|location=Sequence derived from alignment at F-serratus_M_contig624:236582..237183+ (Fucus serratus male)
GCCTTCGGCAAGCAGAAGCGGAGCGTGGGATTTTTGGATCAGCACAAGCA
AGAAAATACCGTGGCACTCGCAGAGGAAGGGCGGAAAGGGGAATGCTTGA
AACGCGAGGTGGAAGTCTCGATGGAGAAGGTACATGAACACGCCTCGGCG
CTCGAGGAGAAGGAGCGAAGACTGGCGTACTCGGAGCGCCTGCGTTTGGA
AGTCGTCGCCAACTTGGCAGACGTACAGCGGCGACATGTCGAGACTCTGA
AAGGGAAGGAGCACAAGACGTTGTGCATGGAGAAGAACGTGGAGAAGTTG
AAGTGCAAGATAGACAAACTTGTTGGCGAAATTGGCTGCTTTGAGAACTT
GATGACGCAAGCGCAGGAACAGCACGCTTCAGCTGTCGACGAAGAGCAGC
AGAAGGTGAAGCGCTTGGAGAAGGAGGTGCACCGCTTGAAGCAAGCAAGA
GCACAGATGAAACGCAAAGAGCCGCTCGAGTACCACAAGATGCGCTTGGA
GAGACGTCTCGCTGACGAGCAGCAGAGGGCAGAGCGTCTGGAGAGGGAGT
TCGAGAAATCAAAGGGGGAGGCAGAGGTAATGAAACACGAGATTGAGGAG
GCCTTCGGCAAGCAGAAGCGGAGCGTGGGATTTTTGGATCAGCACAAGCA
AGAAAATACCGTGGCACTCGCAGAGGAAGGGCGGAAAGGGGAATGCTTGA
AACGCGAGGTGGAAGTCTCGATGGAGAAGGTACATGAACACGCCTCGGCG
CTCGAGGAGAAGGAGCGAAGACTGGCGTACTCGGAGCGCCTGCGTTTGGA
AGTCGTCGCCAACTTGGCAGACGTACAGCGGCGACATGTCGAGACTCTGA
AAGGGAAGGAGCACAAGACGTTGTGCATGGAGAAGAACGTGGAGAAGTTG
AAGTGCAAGATAGACAAACTTGTTGGCGAAATTGGCTGCTTTGAGAACTT
GATGACGCAAGCGCAGGAACAGCACGCTTCAGCTGTCGACGAAGAGCAGC
AGAAGGTGAAGCGCTTGGAGAAGGAGGTGCACCGCTTGAAGCAAGCAAGA
GCACAGATGAAACGCAAAGAGCCGCTCGAGTACCACAAGATGCGCTTGGA
GAGACGTCTCGCTGACGAGCAGCAGAGGGCAGAGCGTCTGGAGAGGGAGT
TCGAGAAATCAAAGGGGGAGGCAGAGGTAATGAAACACGAGATTGAGGAG
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