mRNA_F-serratus_M_contig6237.17079.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6237.17079.1
Unique NamemRNA_F-serratus_M_contig6237.17079.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6237.17079.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.040e-15
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 1 
Query:    1 MAHKILKRKRDNFQRTQQAGGSSSGRK--RRSADGTVVATADPVLKALRLKGSRRTRSGGETNPPVQQQ---VDLKQQSAETLLASMKSMAEESLLTFLEKMGVEAATDIRRNTAELRAKAAVGIALERAIGAAQKQ 396
            +  K+LK KR+ +Q+ QQ  G SS     RR+AD  V   ADPV+ ALR  G  RTRS  +T+ PV+Q+   V+ +Q + ET LASM SM  E+ L  L+K+G   A D      EL AKA+  ++LERAI  A KQ
Sbjct:   58 LTDKVLKNKREQWQKAQQRSGGSSRSSGVRRTADSAV---ADPVITALR--GGGRTRSRVQTSEPVEQETEPVNWRQHATETFLASMDSMGHENALRHLKKIGSTFAKDTLVRLRELEAKASTAVSLERAIEQAPKQ 189
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BLAST of mRNA_F-serratus_M_contig6237.17079.1 vs. uniprot
Match: A0A6H5KCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.470e-15
Identity = 61/137 (44.53%), Postives = 80/137 (58.39%), Query Frame = 1 
Query:    1 MAHKILKRKRDNFQRTQQAGGSSSGRK--RRSADGTVVATADPVLKALRLKGSRRTRSGGETNPPVQQQ---VDLKQQSAETLLASMKSMAEESLLTFLEKMGVEAATDIRRNTAELRAKAAVGIALERAIGAAQKQ 396
            +  K+LK KR+ +Q+ QQ  G SS     RR+AD  V   ADPV+ ALR  G  RTRS  +T+ P +Q+   V+ +Q + ET LASM SM  E+ L  LEK+G   A D      EL AKA+  ++LER I  AQ Q
Sbjct:   16 LTDKVLKHKREQWQKAQQRSGGSSRSSGVRRTADSAV---ADPVITALR--GGGRTRSRVQTSEPAEQETAPVNWRQHATETFLASMDSMGYENALLHLEKIGSTFAKDTLVRLRELEAKASTAVSLERVIEQAQMQ 147
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6237.17079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KI10_9PHAE1.040e-1545.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCJ5_9PHAE3.470e-1544.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6237contigF-serratus_M_contig6237:27741..28466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931931.838211-CDS-F-serratus_M_contig6237:27740..279351622931931.838211-CDS-F-serratus_M_contig6237:27740..27935Fucus serratus maleCDSF-serratus_M_contig6237 27741..27935 -
1690964063.3813086-CDS-F-serratus_M_contig6237:27740..279351690964063.3813086-CDS-F-serratus_M_contig6237:27740..27935Fucus serratus maleCDSF-serratus_M_contig6237 27741..27935 -
1622931931.855791-CDS-F-serratus_M_contig6237:28265..284661622931931.855791-CDS-F-serratus_M_contig6237:28265..28466Fucus serratus maleCDSF-serratus_M_contig6237 28266..28466 -
1690964063.3963928-CDS-F-serratus_M_contig6237:28265..284661690964063.3963928-CDS-F-serratus_M_contig6237:28265..28466Fucus serratus maleCDSF-serratus_M_contig6237 28266..28466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6237.17079.1prot_F-serratus_M_contig6237.17079.1Fucus serratus malepolypeptideF-serratus_M_contig6237 27741..28466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6237.17079.1

>prot_F-serratus_M_contig6237.17079.1 ID=prot_F-serratus_M_contig6237.17079.1|Name=mRNA_F-serratus_M_contig6237.17079.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MAHKILKRKRDNFQRTQQAGGSSSGRKRRSADGTVVATADPVLKALRLKG
SRRTRSGGETNPPVQQQVDLKQQSAETLLASMKSMAEESLLTFLEKMGVE
AATDIRRNTAELRAKAAVGIALERAIGAAQKQ
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mRNA from alignment at F-serratus_M_contig6237:27741..28466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6237.17079.1 ID=mRNA_F-serratus_M_contig6237.17079.1|Name=mRNA_F-serratus_M_contig6237.17079.1|organism=Fucus serratus male|type=mRNA|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig6237:27741..28466- (Fucus serratus male)
ATGGCACACAAAATTCTGAAGCGCAAGCGAGACAACTTCCAGAGAACACA
ACAGGCTGGCGGCAGCAGCAGCGGGCGCAAGAGGAGGAGCGCAGATGGCA
CAGTGGTGGCTACGGCGGATCCAGTCTTGAAGGCTTTGCGGTTGAAGGGT
TCGAGGAGGACTCGGTCTGGAGGAGAAACGAACCCGCCAGTTCAGCAACA
GGTGAGATGGAGGGAGGTAGGCAAAGATATGCCGAAAATATGTAGATTGT
TGTGTGTGTGTTTGGAGATAAACCGAAGAAGGGGAAAACAACAAGCAGAG
AGAAGCTCTGTGAGTAGATTATACCGAGCAGAGACGTGCCCGCCACTTCT
AATTAAGCCGAGAGGCGTGTAAAATGTACCGAGGACAGATGCACACCCCG
CTTGCATGAGCCGAGAGGTGACTTTGGTTCACCATGGCTGTGCTGAAATC
CCCGCACTTGCAGACTACCAACACCACCAACACCGCACCGTTCAACGCTT
TCCTCGTGTGATATGTTGGCCACAGGCTGAGGTCGACTTGAAACAGCAGT
CGGCGGAGACATTACTCGCTTCGATGAAAAGCATGGCAGAGGAGAGCCTG
CTGACATTCTTGGAAAAAATGGGGGTGGAAGCTGCCACGGATATTCGCCG
AAATACCGCGGAGCTGAGGGCGAAGGCAGCCGTGGGTATCGCGCTTGAGA
GAGCTATCGGGGCGGCGCAGAAGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6237:27741..28466-

>mRNA_F-serratus_M_contig6237.17079.1 ID=mRNA_F-serratus_M_contig6237.17079.1|Name=mRNA_F-serratus_M_contig6237.17079.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig6237:27741..28466- (Fucus serratus male)
ATGGCACACAAAATTCTGAAGCGCAAGCGAGACAACTTCCAGAGAACACA
ACAGGCTGGCGGCAGCAGCAGCGGGCGCAAGAGGAGGAGCGCAGATGGCA
CAGTGGTGGCTACGGCGGATCCAGTCTTGAAGGCTTTGCGGTTGAAGGGT
TCGAGGAGGACTCGGTCTGGAGGAGAAACGAACCCGCCAGTTCAGCAACA
GATGGCACACAAAATTCTGAAGCGCAAGCGAGACAACTTCCAGAGAACAC
AACAGGCTGGCGGCAGCAGCAGCGGGCGCAAGAGGAGGAGCGCAGATGGC
ACAGTGGTGGCTACGGCGGATCCAGTCTTGAAGGCTTTGCGGTTGAAGGG
TTCGAGGAGGACTCGGTCTGGAGGAGAAACGAACCCGCCAGTTCAGCAAC
AGGTCGACTTGAAACAGCAGTCGGCGGAGACATTACTCGCTTCGATGAAA
AGCATGGCAGAGGAGAGCCTGCTGACATTCTTGGAAAAAATGGGGGTGGA
AGCTGCCACGGATATTCGCCGAAATACCGCGGAGCTGAGGGCGAAGGCAG
CCGTGGGTATCGCGCTTGAGAGAGCTATCGGGGCGGCGCAGAAGCAGGTC
GACTTGAAACAGCAGTCGGCGGAGACATTACTCGCTTCGATGAAAAGCAT
GGCAGAGGAGAGCCTGCTGACATTCTTGGAAAAAATGGGGGTGGAAGCTG
CCACGGATATTCGCCGAAATACCGCGGAGCTGAGGGCGAAGGCAGCCGTG
GGTATCGCGCTTGAGAGAGCTATCGGGGCGGCGCAGAAGCAG
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