mRNA_F-serratus_M_contig623.17073.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig623.17073.1
Unique NamemRNA_F-serratus_M_contig623.17073.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig623.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig623contigF-serratus_M_contig623:2754..4231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size410
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig623.17073.1prot_F-serratus_M_contig623.17073.1Fucus serratus malepolypeptideF-serratus_M_contig623 2754..4231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931930.9811726-CDS-F-serratus_M_contig623:2753..28051622931930.9811726-CDS-F-serratus_M_contig623:2753..2805Fucus serratus maleCDSF-serratus_M_contig623 2754..2805 -
1690964062.9746382-CDS-F-serratus_M_contig623:2753..28051690964062.9746382-CDS-F-serratus_M_contig623:2753..2805Fucus serratus maleCDSF-serratus_M_contig623 2754..2805 -
1622931931.0027668-CDS-F-serratus_M_contig623:3093..32961622931931.0027668-CDS-F-serratus_M_contig623:3093..3296Fucus serratus maleCDSF-serratus_M_contig623 3094..3296 -
1690964062.9971328-CDS-F-serratus_M_contig623:3093..32961690964062.9971328-CDS-F-serratus_M_contig623:3093..3296Fucus serratus maleCDSF-serratus_M_contig623 3094..3296 -
1622931931.021359-CDS-F-serratus_M_contig623:3787..39141622931931.021359-CDS-F-serratus_M_contig623:3787..3914Fucus serratus maleCDSF-serratus_M_contig623 3788..3914 -
1690964063.010092-CDS-F-serratus_M_contig623:3787..39141690964063.010092-CDS-F-serratus_M_contig623:3787..3914Fucus serratus maleCDSF-serratus_M_contig623 3788..3914 -
1622931931.0411842-CDS-F-serratus_M_contig623:4205..42311622931931.0411842-CDS-F-serratus_M_contig623:4205..4231Fucus serratus maleCDSF-serratus_M_contig623 4206..4231 -
1690964063.0232182-CDS-F-serratus_M_contig623:4205..42311690964063.0232182-CDS-F-serratus_M_contig623:4205..4231Fucus serratus maleCDSF-serratus_M_contig623 4206..4231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig623.17073.1

>prot_F-serratus_M_contig623.17073.1 ID=prot_F-serratus_M_contig623.17073.1|Name=mRNA_F-serratus_M_contig623.17073.1|organism=Fucus serratus male|type=polypeptide|length=136bp
PVGDLDEERDIGEVVKGFRRVAERLRGVSECSKRVARDNEARAGKHKGAK
KLLERDETMVQLRPDLEASVLEAARLRPKCLELQAAERRNSDNGTDPNKF
GGGARTAAQRPVGDLDEERDIGEVVKGFRRVAERLR
back to top

mRNA from alignment at F-serratus_M_contig623:2754..4231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig623.17073.1 ID=mRNA_F-serratus_M_contig623.17073.1|Name=mRNA_F-serratus_M_contig623.17073.1|organism=Fucus serratus male|type=mRNA|length=1478bp|location=Sequence derived from alignment at F-serratus_M_contig623:2754..4231- (Fucus serratus male)
CCGGTCGGAGATCTCGACGAGGAGAGGTACGATATTCCTTATTTTTTCGA
TTCCCAGAAGACCAGGGGTAAACAATGCCCGTCACCTTCTACCCTCGGAG
TCAACCCTGAGACCCCGGCCAAGTATTTTCTTGGAGATGAGAGGCACGTC
ATTCCTCCGTCCTCTTCAAGAGGAAGAAAGTCCTGTCTAACGTGCGGGGA
TCCCTCGGCAACAACAGTTACTACTGTAGACCAAATTGACTCCCAGATAT
TCTCACCCAACATTTGTATCACCCAAATCTGAAGTTTGTTGCTGTTTCGC
CTTCACTTGGTTGGCAGGGACATCGGTGAAGTGGTCAAAGGCTTCAGACG
CGTCGCCGAGAGACTCCGGGGCGTGAGCGAATGCTCCAAAAGGGTTGCCA
GAGATAACGAGGCTCGAGCGGGGAAGCATAAAGGCGCGAAAAAGGTGCAT
AACCGCGCGTCGGGGCTTGCCGCTACTGCAAGAGGAAGTGGATAGGGTTG
CAGCGAGGTTCAAGTAGCAGGTTTTGTCATACTGAAGCTTTTGCGCTAAA
ATATCTGACGGTTTCGTGTTATAAATAGTTGGATTCGAGAGGCAGGTTTG
GAGAGGCAAGAGAGAGTCCGCTGGGTGAGGTGCGTGCACTGCCGTAAAAG
CCCGTTGAGATTACACAAGGTTGCATGGATGTGTTCTGGTTGTGTTTTTC
CACGTGGTTGACATAGGCTCGTAAGGTGTATTGTTTAGCTGGAGTGGCAA
CGGAACGATCCCACCGCAAGAAAATATATGTGCCCGTCCCAGGTGAAAAA
CATAGTAGCGTATGTACCCGCCGAACAACCCTTGTTCAGTGGGATCAACC
GTGGTAAATGTTTTCGGGGTTAAATCGCGTTGGAGCCCATCCACTCCCCT
CCTCCCTGTTCCCGTACTGTTGCTTTGTGCGGCAGCTTCTTGAACGTGAC
GAGACCATGGTGCAGCTGAGGCCCGATCTCGAGGCAAGCGTGCTGGAGGC
GGCGCGACTGCGGCCAAAGTGCTTAGAGCTCCAAGCTGCCGAGCGAAGAA
ACAGTGACAATGGTACAGATCCTAATAAGTTTGGAGGCGGTGCTAGAACC
GCCGCTCAAAGGCCGGTCGGAGATCTCGACGAGGAGAGGTAAGATAGTCC
TTATTTTTCGATTCCCAGAAGACCAGGGGTAAAAAATGCCCGTCACCTTC
CACCCTCGGAGTCAACCCTGAGACCTCGGCCAAGTATTTTCTTGGAGATG
AGAGGCACGCCATCCCTCCGTCCTCTTCAAGAGGAAGAAAGTCCTGTCTA
ACGTGCGGGGATCCCTCGGCAACAACAGTTACTACTGTAGACCAAATTGA
CTCCCAGATATTCTCACCCAACATTTCTCACCCAAATCTGAAGTTTGTTG
CTGTTTCGCCTTCACTTGGTTGGCAGGGACATCGGTGAAGTGGTCAAAGG
CTTCAGACGCGTCGCCGAGAGACTCCGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig623:2754..4231-

>mRNA_F-serratus_M_contig623.17073.1 ID=mRNA_F-serratus_M_contig623.17073.1|Name=mRNA_F-serratus_M_contig623.17073.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig623:2754..4231- (Fucus serratus male)
CCGGTCGGAGATCTCGACGAGGAGAGCCGGTCGGAGATCTCGACGAGGAG
AGGGACATCGGTGAAGTGGTCAAAGGCTTCAGACGCGTCGCCGAGAGACT
CCGGGGCGTGAGCGAATGCTCCAAAAGGGTTGCCAGAGATAACGAGGCTC
GAGCGGGGAAGCATAAAGGCGCGAAAAAGGGACATCGGTGAAGTGGTCAA
AGGCTTCAGACGCGTCGCCGAGAGACTCCGGGGCGTGAGCGAATGCTCCA
AAAGGGTTGCCAGAGATAACGAGGCTCGAGCGGGGAAGCATAAAGGCGCG
AAAAAGCTTCTTGAACGTGACGAGACCATGGTGCAGCTGAGGCCCGATCT
CGAGGCAAGCGTGCTGGAGGCGGCGCGACTGCGGCCAAAGTGCTTAGAGC
TCCAAGCTGCCGAGCGAAGAAACAGTGACAATGGTACAGATCCTAATAAG
TTTGGAGGCGGTGCTAGAACCGCCGCTCAAAGGCCGGTCGGAGATCTCGA
CGAGGAGAGCTTCTTGAACGTGACGAGACCATGGTGCAGCTGAGGCCCGA
TCTCGAGGCAAGCGTGCTGGAGGCGGCGCGACTGCGGCCAAAGTGCTTAG
AGCTCCAAGCTGCCGAGCGAAGAAACAGTGACAATGGTACAGATCCTAAT
AAGTTTGGAGGCGGTGCTAGAACCGCCGCTCAAAGGCCGGTCGGAGATCT
CGACGAGGAGAGGGACATCGGTGAAGTGGTCAAAGGCTTCAGACGCGTCG
CCGAGAGACTCCGGGGACATCGGTGAAGTGGTCAAAGGCTTCAGACGCGT
CGCCGAGAGACTCCGG
back to top