mRNA_F-serratus_M_contig6228.17072.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6228.17072.1
Unique NamemRNA_F-serratus_M_contig6228.17072.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 9.970e-88
Identity = 162/391 (41.43%), Postives = 229/391 (58.57%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTF--CDMTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            R P+G   +SG + +L K++Y L QA R W+     C + A+GFEQ  AD CVFR   DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     VP++SGV  LS  D  +   E      FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P   H  A M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVS  ++    GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHID +HH +R+    K + V +V S  Q AD LTK L    F  H  F++N+
Sbjct:   80 RLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRC-LVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 461          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 7.890e-87
Identity = 158/390 (40.51%), Postives = 230/390 (58.97%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTFCD-MTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            R P G   +SG + +LNK++Y L QA R W++     +  +GF Q  AD CVFR   +G   + +VVHVDDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   ++P+  G+  LS  D+       EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVS  ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHID +HH +R+    K + + +V S  QHAD LTK L    F  H  +++++
Sbjct:   56 RLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 7.960e-85
Identity = 158/390 (40.51%), Postives = 230/390 (58.97%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTFCD-MTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            R P G   +SG + +LNK++Y L QA R W++     +  +GF Q  AD CVFR   +G   + +VVHVDDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   ++P+  G+  LS  D+       EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVS  ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHID +HH +R+    K + + +V S  QHAD LTK L    F  H  +++++
Sbjct:  230 RLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 4.020e-82
Identity = 152/392 (38.78%), Postives = 229/392 (58.42%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTF--CDMTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNVV 1167
            R P G   +SG + +LNK++Y L QA R W      C + A+GFEQ  AD CVFR   DGE  +++VVHVDDI A    K   D+F  +LG+   +K +G+ ++Y GC+  R+R+   L   Q  Y + + +R  V+    +P+    PT  R  +    E   E   +P+R  +G+L+W A +TRPDIA AVRAVAR+C  P   H +A + I  Y + T  +GI++  G   G  +  + D+D+ +    RRSVS  V+M A GAI+W S+ Q+     T++AEYVA+A+  K++LFLR+V  FM P      + ++EDNEGAI++A +  ++  +KHID +HH +R     K V + +V S+ QHAD LTK L  + F  H  +++N++
Sbjct:    2 RLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKC-LLALGFEQCMADSCVFRLVEDGEVVLILVVHVDDIFA-VGTKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPL----PTTWRLWDSDVNEPSVE---YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFHRDYVMNLM 384          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 2.150e-81
Identity = 162/391 (41.43%), Postives = 229/391 (58.57%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTF--CDMTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            R P+G   +SG + +L K++Y L QA R W+     C + A+GFEQ  AD CVFR   DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     VP++SGV  LS  D  +   E      FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P   H  A M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVS  ++    GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHID +HH +R+    K + V +V S  Q AD LTK L    F  H  F++N+
Sbjct: 1416 RLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRC-LVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 1797          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 2.310e-81
Identity = 160/391 (40.92%), Postives = 229/391 (58.57%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTF--CDMTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            R P+G   +SG + +L K++Y L QA R W+     C + A+GFEQ  AD CVFR   DG   +++VVHVDDI A   ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     VP++SGV  LS  D  +   +      FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P   H  A M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVS  ++    GA+SW SR Q+     T+EAEYVAL + VK++LFLRQ+  FM P + +  + +FEDN+GAI+LA N  ++  +KHID +HH +R+    K + V +V S  Q AD LTK L    F  H  F++N+
Sbjct:  910 RLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRC-LVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATD------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 1291          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.380e-80
Identity = 157/390 (40.26%), Postives = 230/390 (58.97%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTFCD-MTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            R P G   +SG + +LNK++Y L QA R W++     +  +GF Q  AD CVFR   +G   + +VVHVDDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   ++P+  G+  LS  D+       EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVS  ++M   G ISW SR Q+     T+EAEYV+LA+ +K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHID +HH +R+    K + + +V S  QHA+ LTK L    F  H  +++++
Sbjct:  751 RLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMSM 1132          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 3.030e-80
Identity = 151/391 (38.62%), Postives = 225/391 (57.54%), Query Frame = 1
Query:    1 RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNN--TFCDMTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            R P+G   +SG + +L K++Y L QA R W++  T C +  +GF Q  AD CVFR   +G   M++VVHVDDI A  + K   D+F  +L +   +K++G+  +Y  C   R+ +   L+  Q  + E +   + ++    VP+   V  L+  DE       E     P+RE VG+LMW AT TRPDIA AVRAVAR+C +P   H KA + I  Y+  T   GIT+  G   G+ M+ + D+D+ +    RRSVS  ++M   G ++W SR Q+     T+EAEYVA+A+ +K+VLFLRQV  FM P   +  + VFEDN+GAI++A N   +  +KHID +HH +R+    K + + +V +  QHAD LTK +  +    H  F++N+
Sbjct:   56 RLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRC-LLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSV-KLTDFDE------NEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 3.980e-80
Identity = 147/383 (38.38%), Postives = 223/383 (58.22%), Query Frame = 1
Query:   25 VSGAVGRLNKAIYELVQAGRCWNN--TFCDMTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 1164
            +SG + +L K++Y L QA R W+   T C +  +GF Q  AD CVFR   +G   M++VVHVDDI A  + K   D+F  +L +   +K++G+  +Y  C   R+ +   L+  Q  + E +   + ++    VP+   V  L+  DE ++  +       P+RE VG+LMW AT TRPDIA AVRAVAR+C +P   H KA + I  Y+  T   GIT+  G   G+ M+ + D+D+ +    RRSVS  ++M   G ++W SR Q+     T+EAEYVA+A+ +K+VLFLRQV  FM P   +  + VFEDN+GAI++  N   +  +KHID +HH +R+    K + + +V ++ QHAD LTK +  + F  H  F++N+
Sbjct:    2 LSGLIVKLCKSLYGLKQASRHWHAHLTRC-LLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSV-KLTDFDENEASAD------VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375          
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.560e-79
Identity = 151/365 (41.37%), Postives = 231/365 (63.29%), Query Frame = 1
Query:   46 LNKAIYELVQAGRCWNNTFCD-MTAIGFEQAKADPCVFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAK---VPVASGVPTLSRADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASYAKRVRVAYVRSEDQHADLLTKPLDVK 1128
            L +++Y L QA R WN T    + ++GFE A ADPCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES+IK+F  ++ AK    P+  GV  L++ADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+++    D RRSVS  +LML    + W S  Q+  A  ++EAEY+AL++ VK+ +++R++ + +    +VGA+ ++EDN+GA+ LA N     RTKHID ++H +R+   +  V + YV +++Q AD +TK L  K
Sbjct:   57 LLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFG-QENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGLSSK 416          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6228.17072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE9.970e-8841.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE7.890e-8740.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE7.960e-8540.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE4.020e-8238.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE2.150e-8141.43Integrase catalytic domain-containing protein n=18... [more]
A0A6H5JG40_9PHAE2.310e-8140.92Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5K2R1_9PHAE1.380e-8040.26Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JEF2_9PHAE3.030e-8038.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE3.980e-8038.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA1.560e-7941.37Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6228contigF-serratus_M_contig6228:20444..21613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.8
Seed ortholog evalue4.1e-63
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1170
Cds size1170
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931930.9397957-CDS-F-serratus_M_contig6228:20443..216131622931930.9397957-CDS-F-serratus_M_contig6228:20443..21613Fucus serratus maleCDSF-serratus_M_contig6228 20444..21613 -
1690964062.9491615-CDS-F-serratus_M_contig6228:20443..216131690964062.9491615-CDS-F-serratus_M_contig6228:20443..21613Fucus serratus maleCDSF-serratus_M_contig6228 20444..21613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6228.17072.1prot_F-serratus_M_contig6228.17072.1Fucus serratus malepolypeptideF-serratus_M_contig6228 20444..21613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6228.17072.1

>prot_F-serratus_M_contig6228.17072.1 ID=prot_F-serratus_M_contig6228.17072.1|Name=mRNA_F-serratus_M_contig6228.17072.1|organism=Fucus serratus male|type=polypeptide|length=390bp
RDPRGVSGVSGAVGRLNKAIYELVQAGRCWNNTFCDMTAIGFEQAKADPC
VFRKAVDGEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDVGDA
EYYMGCHITRNRKTRELKFDQYLYVESMIKRFDVKKEAKVPVASGVPTLS
RADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCEN
PGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTR
RSVSCAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQV
QEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDGKHHLVRDASY
AKRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNVV*
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mRNA from alignment at F-serratus_M_contig6228:20444..21613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6228.17072.1 ID=mRNA_F-serratus_M_contig6228.17072.1|Name=mRNA_F-serratus_M_contig6228.17072.1|organism=Fucus serratus male|type=mRNA|length=1170bp|location=Sequence derived from alignment at F-serratus_M_contig6228:20444..21613- (Fucus serratus male)
AGAGATCCCCGAGGAGTTTCAGGAGTTTCAGGGGCAGTAGGACGGCTCAA CAAGGCCATTTACGAACTCGTGCAGGCGGGGAGGTGTTGGAACAATACGT TCTGTGACATGACGGCGATTGGGTTCGAGCAGGCAAAGGCGGACCCGTGC GTGTTCCGCAAGGCCGTTGACGGTGAGGCGGAGATGGTGGTAGTCGTGCA CGTAGACGACATCCTGGCCCACGCAAAAGACAAAGCGACGATGGATAGAT TCGCGGCCGAGCTCGGGCAGAAGTTTAAGTTGAAGGACGTGGGGGACGCC GAATACTACATGGGCTGTCACATCACCCGGAACCGCAAGACGCGTGAGTT AAAGTTCGACCAATACCTGTACGTGGAGTCGATGATAAAGAGGTTCGATG TCAAGAAGGAAGCCAAGGTACCGGTTGCGTCGGGGGTGCCGACGCTCTCA AGGGCGGATGAGCCGCAAAGCCCAGAGGAAAAGGAAGAGATGAAGATGTT CCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCGACGATGACAC GGCCGGATATCGCGTGCGCCGTACGCGCTGTGGCCAGGTTCTGCGAAAAC CCCGGGCCAGCGCATAAGAAGGCAGTGATGAAGATCTTCCAGTATCTCCT CCACACGAAAGATTGGGGAATTACGTATGGTGGACAGGGCTGTGGACTAT GCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGA CGATCGGTTTCATGTGCGGTGTTGATGTTGGCCAAGGGGGCGATTAGTTG GCACTCTAGAATGCAAGAGGTAACGGCAGCAGGTACCTCGGAGGCAGAGT ACGTTGCCTTAGCGGAGGCAGTCAAGGATGTACTGTTTTTGAGACAGGTG CAGGAGTTCATGGAACCGTCAATGAGGGTCGGTGCGGTAAATGTGTTTGA AGATAATGAGGGGGCCATTAAGCTGGCCACAAACAAGCATGCTAGTCGTA GGACTAAGCACATTGATGGGAAGCATCACCTAGTGAGGGACGCGTCTTAC GCAAAAAGGGTAAGAGTAGCGTACGTAAGGTCGGAAGATCAACACGCGGA TTTGCTCACGAAACCGCTAGACGTGAAAAAGTTCTGTAAGCACGCCAAGT TCATCCTAAATGTAGTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6228:20444..21613-

>mRNA_F-serratus_M_contig6228.17072.1 ID=mRNA_F-serratus_M_contig6228.17072.1|Name=mRNA_F-serratus_M_contig6228.17072.1|organism=Fucus serratus male|type=CDS|length=2340bp|location=Sequence derived from alignment at F-serratus_M_contig6228:20444..21613- (Fucus serratus male)
AGAGATCCCCGAGGAGTTTCAGGAGTTTCAGGGGCAGTAGGACGGCTCAA
CAAGGCCATTTACGAACTCGTGCAGGCGGGGAGGTGTTGGAACAATACGT
TCTGTGACATGACGGCGATTGGGTTCGAGCAGGCAAAGGCGGACCCGTGC
GTGTTCCGCAAGGCCGTTGACGGTGAGGCGGAGATGGTGGTAGTCGTGCA
CGTAGACGACATCCTGGCCCACGCAAAAGACAAAGCGACGATGGATAGAT
TCGCGGCCGAGCTCGGGCAGAAGTTTAAGTTGAAGGACGTGGGGGACGCC
GAATACTACATGGGCTGTCACATCACCCGGAACCGCAAGACGCGTGAGTT
AAAGTTCGACCAATACCTGTACGTGGAGTCGATGATAAAGAGGTTCGATG
TCAAGAAGGAAGCCAAGGTACCGGTTGCGTCGGGGGTGCCGACGCTCTCA
AGGGCGGATGAGCCGCAAAGCCCAGAGGAAAAGGAAGAGATGAAGATGTT
CCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCGACGATGACAC
GGCCGGATATCGCGTGCGCCGTACGCGCTGTGGCCAGGTTCTGCGAAAAC
CCCGGGCCAGCGCATAAGAAGGCAGTGATGAAGATCTTCCAGTATCTCCT
CCACACGAAAGATTGGGGAATTACGTATGGTGGACAGGGCTGTGGACTAT
GCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGA
CGATCGGTTTCATGTGCGGTGTTGATGTTGGCCAAGGGGGCGATTAGTTG
GCACTCTAGAATGCAAGAGGTAACGGCAGCAGGTACCTCGGAGGCAGAGT
ACGTTGCCTTAGCGGAGGCAGTCAAGGATGTACTGTTTTTGAGACAGGTG
CAGGAGTTCATGGAACCGTCAATGAGGGTCGGTGCGGTAAATGTGTTTGA
AGATAATGAGGGGGCCATTAAGCTGGCCACAAACAAGCATGCTAGTCGTA
GGACTAAGCACATTGATGGGAAGCATCACCTAGTGAGGGACGCGTCTTAC
GCAAAAAGGGTAAGAGTAGCGTACGTAAGGTCGGAAGATCAACACGCGGA
TTTGCTCACGAAACCGCTAGACGTGAAAAAGTTCTGTAAGCACGCCAAGT
TCATCCTAAATGTAGTGTGAAGAGATCCCCGAGGAGTTTCAGGAGTTTCA
GGGGCAGTAGGACGGCTCAACAAGGCCATTTACGAACTCGTGCAGGCGGG
GAGGTGTTGGAACAATACGTTCTGTGACATGACGGCGATTGGGTTCGAGC
AGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGCCGTTGACGGTGAGGCG
GAGATGGTGGTAGTCGTGCACGTAGACGACATCCTGGCCCACGCAAAAGA
CAAAGCGACGATGGATAGATTCGCGGCCGAGCTCGGGCAGAAGTTTAAGT
TGAAGGACGTGGGGGACGCCGAATACTACATGGGCTGTCACATCACCCGG
AACCGCAAGACGCGTGAGTTAAAGTTCGACCAATACCTGTACGTGGAGTC
GATGATAAAGAGGTTCGATGTCAAGAAGGAAGCCAAGGTACCGGTTGCGT
CGGGGGTGCCGACGCTCTCAAGGGCGGATGAGCCGCAAAGCCCAGAGGAA
AAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCAT
GTGGACGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGCTG
TGGCCAGGTTCTGCGAAAACCCCGGGCCAGCGCATAAGAAGGCAGTGATG
AAGATCTTCCAGTATCTCCTCCACACGAAAGATTGGGGAATTACGTATGG
TGGACAGGGCTGTGGACTATGCATGGAAGCGTATACGGATTCGGATTTCG
GAGCCTGCCTGGACACAAGACGATCGGTTTCATGTGCGGTGTTGATGTTG
GCCAAGGGGGCGATTAGTTGGCACTCTAGAATGCAAGAGGTAACGGCAGC
AGGTACCTCGGAGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGATG
TACTGTTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCAATGAGGGTC
GGTGCGGTAAATGTGTTTGAAGATAATGAGGGGGCCATTAAGCTGGCCAC
AAACAAGCATGCTAGTCGTAGGACTAAGCACATTGATGGGAAGCATCACC
TAGTGAGGGACGCGTCTTACGCAAAAAGGGTAAGAGTAGCGTACGTAAGG
TCGGAAGATCAACACGCGGATTTGCTCACGAAACCGCTAGACGTGAAAAA
GTTCTGTAAGCACGCCAAGTTCATCCTAAATGTAGTGTGA
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