mRNA_F-serratus_M_contig622.17065.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig622.17065.1
Unique NamemRNA_F-serratus_M_contig622.17065.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: D8LP04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP04_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 7.750e-83
Identity = 154/252 (61.11%), Postives = 176/252 (69.84%), Query Frame = 3 
Query:   57 MRALTVVTLVAVAIPLNAQFGGMPPKERSSAVKGDLPAIKCGVCEALMDVMHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVGEDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGK-RTRVPKGRKDYPFEEKSTKDFEMEELMESLXXXXXXXXXXXPGMQMYTPDQLGAMQEMM---GDMXXXXXXYXXXXGFGMGGDGG 800
            MRAL V+TL A AIPLNAQFG MPPK +S  VKGDL AIKCGVC+ L + ++EKVA +R  AP+GKVHEDDIS +IE ACDP    GRWITE+DI EEGGYLELK+    SHCKEECETIAKSC  LV ++LDVEE+VVALWKN+LG   L+K  C EWS+RCSGK R + PK R+DY FE K+ KDFE+ E ME L      XXX  PG+  Y PD L AM  MM   GDM            F MGG GG
Sbjct:    1 MRALAVLTLAAAAIPLNAQFG-MPPKPKSDPVKGDLAAIKCGVCQGLAEHLYEKVAEMREAAPFGKVHEDDISTVIEGACDPATKEGRWITEYDIVEEGGYLELKKQDSFSHCKEECETIAKSCTVLVDDELDVEEVVVALWKNKLGLSELQKAACGEWSDRCSGKKRVKAPKDRQDYEFEPKTAKDFEVAEAMERLQNSMGGXXX--PGI--YGPDDLAAMDAMMSQXGDMGQDPFA----DDFDMGGMGG 243
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A830HUM6_9CHLO (DUF3456 domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HUM6_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 8.610e-21
Identity = 69/189 (36.51%), Postives = 104/189 (55.03%), Query Frame = 3 
Query:  123 MPPKERSSAVKGDLPAIKCGVCEALMD-------VMH-EKVASLRADAPYGKVHED--DISG----LIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVGE-DLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRVPKGRKD-YPFEEKSTKDFEMEELMES 641
            MP K+  +A++ D+P I+CGVC+AL D       VMH E +   R+ +    V  D  D+ G    ++E ACDP K  G W+T  D+ E+G  +++       HC+EEC+T+ ++C   +G+ D D+ E+   L+ N   A  +R   C E S  C+ K  +VP  RK    F+ KS KD EM++LM S
Sbjct:   27 MPSKKTYAAIRTDVPFIECGVCKALADHLTSEASVMHRELLEKSRSSSSKSSVRRDLGDLEGRILEVVENACDPEKDQGTWLTSLDMVEDGDAIKVVAQDTPGHCEEECKTVQRACEKALGDSDTDLAEM---LYTNRKSAREVRDWLCVEESGVCAKKPPKVPATRKPGKEFKPKSEKDLEMDKLMRS 212
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A426ZB01_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426ZB01_ENSVE)

HSP 1 Score: 94.4 bits (233), Expect = 1.680e-17
Identity = 73/220 (33.18%), Postives = 110/220 (50.00%), Query Frame = 3 
Query:   60 RALTVVTLVAVAIPLNAQFGGMPPKERSSAV-KGDLPAIKCGVCEALMDVMHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVG-EDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRVPKGR-KDYPFEEKSTKDFEMEELMESLXXXXXXXXXXXPGMQMYTPDQL 710
            R L+ + L+ + I  +  +     K+ S AV KGD+P I+C VCE +   +  +V +  A     KV E  I  + E  C+  K    WI + D+ E+G  LEL   G    C  EC+TI  +C  ++G  D DV E V +   +    + L K  CK+ S+ CS K   VP  R    PF  KS+K+ EME++++S+           PGM+MY+ + L
Sbjct:    7 RILSSLFLLLLFITSSLPYFVASSKKPSPAVRKGDIPFIRCQVCEKIAHQIIHQVKNKEAQISPKKVSEFQIIEIAENICNLKKEEADWILQIDVVEKGDELELVEQGIEGQCNSECKTIEHACQEIMGYSDTDVAEYVFSARPS---IDQLVKFLCKDLSKACSVKPPPVPTDRVPGEPFIAKSSKEAEMEKILKSMEGMPGA-----PGMKMYSREDL 218
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A7J7D9W8_TRIWF (Uncharacterized protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D9W8_TRIWF)

HSP 1 Score: 94.0 bits (232), Expect = 2.060e-17
Identity = 66/197 (33.50%), Postives = 97/197 (49.24%), Query Frame = 3 
Query:  153 KGDLPAIKCGVCEALMDVMHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVG-EDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRVPKGR-KDYPFEEKSTKDFEMEELMESLXXXXXXXXXXXPGMQMYTPDQLGAMQEMMGD 737
            KGD+P IKC VCE +   ++++V   +A     K+ E  I  + E  C+  K    WIT  DI E+G  LEL        C  EC+TI ++C  ++G  D DV E +    K ++G+  L    CK+ +  C GK   +PK R    PF  K +KD EM++++  +           P MQMY+ D L  M+    D
Sbjct:   36 KGDVPYIKCQVCEKIATQLYQQVQKKQAQISPKKISEYQIIEIAENVCNLKKEEADWITRIDIVEQGDKLELVEQDTEGICNSECKTIERACEEVMGYSDTDVAEYLYTA-KPQIGS--LVDYLCKDLTGSCIGKPPPLPKDRLAGEPFMPKPSKDAEMDKMLRDMQGMPGA-----PNMQMYSKDDLMNMKNFGDD 224
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A804JLC9_MUSAM (Uncharacterized protein n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JLC9_MUSAM)

HSP 1 Score: 92.8 bits (229), Expect = 4.750e-17
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 3 
Query:  144 SAVKGDLPAIKCGVCEALMDVMHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVG-EDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRVPKGR-KDYPFEEKSTKDFEMEELMESLXXXXXXXXXXXPGMQMYTPDQL 710
            +A KGD+P I+C VCE +   +  +V    A     KV E  I  + E  C+  K    WI + D+ E+G  LEL   G    C  EC+TI  +C  ++G  D DV E V +   +    + L K  CK+ S+ CS K   +P  R    PF  KS+KD EME+++ S+           PGM+MY+ + L
Sbjct:   92 AARKGDIPFIRCQVCEKIAHQIIHQVKKKEAQISPKKVSEFQIIEIAENICNLKKEEADWILQIDVVEKGDKLELVEQGIEGQCNSECKTIEHACQEIMGYSDTDVAEYVFSARPS---IDQLVKFLCKDLSKACSVKPPPIPADRVPGEPFIAKSSKDAEMEKILRSMEGMPGA-----PGMKMYSREDL 274
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A8J5G0C8_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5G0C8_ZINOF)

HSP 1 Score: 86.7 bits (213), Expect = 6.360e-15
Identity = 66/196 (33.67%), Postives = 96/196 (48.98%), Query Frame = 3 
Query:  132 KERSSAVKGDLPAIKCGVCE-ALMDVMHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVG-EDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRVPKGRKD-YPFEEKSTKDFEMEELMESLXXXXXXXXXXXPGMQMYTPDQL 710
            K  ++A KGD+P IKC VCE A   ++H+ V    A     KV E  I  + E  C+  K    WI + D+ E+G  LEL   G    C  EC+TI ++C  ++G  D DV E V   +      + L    CK+ S+ CS K   +P  R     F  K TK+ +M++L+ S+           PGM+MY+ + L
Sbjct:   35 KTPAAARKGDIPFIKCQVCEKAAYQIIHQ-VKKKEAQISPKKVSEFQIIEIAENICNLKKEEADWILQIDLVEKGDKLELVEQGVEGLCNSECKTIERACQEIMGYSDTDVAEFV---YSTRPSVDELVNFLCKDLSKACSVKPLPLPADRASGEAFVVKPTKEADMDKLLRSMEGMPGA-----PGMKMYSREDL 221
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A8J5HXD6_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HXD6_ZINOF)

HSP 1 Score: 83.2 bits (204), Expect = 8.790e-14
Identity = 61/191 (31.94%), Postives = 91/191 (47.64%), Query Frame = 3 
Query:  144 SAVKGDLPAIKCGVCEALMDVMHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVG-EDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRVPKGR-KDYPFEEKSTKDFEMEELMESLXXXXXXXXXXXPGMQMYTPDQL 710
            +A KGD+P IKC VCE +   +  +V    +     KV E  I  + E  C+  K    WI + D+ E+G  LEL   G    C  EC+TI ++C  ++G  D DV E V   +      + L    CK+ S+ CS K   +P  R     F  K  K+ EM++++ S+           PGM+MY+ + L
Sbjct:   36 AARKGDIPFIKCQVCEKISHQIIHQVKQKESQISPKKVSELQIIEIAENICNLKKEESDWILQIDLVEKGDKLELIEQGVEGLCNSECKTIERACQEILGYTDTDVAEFV---YSTRPSVDQLINFLCKDLSKACSVKPPPLPADRITGEAFVAKPAKEAEMDKILRSMEGMPGA-----PGMKMYSREDL 218
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A097PST6_CABCA (AT4G29520-like protein (Fragment) n=1 Tax=Cabomba caroliniana TaxID=4426 RepID=A0A097PST6_CABCA)

HSP 1 Score: 76.3 bits (186), Expect = 1.680e-12
Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 3 
Query:  147 AVKGDLPAIKCGVCEA----LMDVMHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGGYLELKRPGGMSHCKEECETIAKSCASLVG-EDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRVPKGR-KDYPFEEKSTKDFEMEELMESLXXXXXXXXXXXPGMQMYTPDQL 710
            A KGDLP I+C VCE     L + +H K+A         K+ E  I  + E  C+  K  G W+   DI E+G  L+L       HC  EC+T+  +C  +VG  D D+ E +              K  CK+ ++ C      VP  R    PF  KS+K+ EM+++++S+           PGM++Y+ + L
Sbjct:    1 ARKGDLPFIRCQVCEIIAKQLFNQVHRKIAPK-------KISEYQIIEIAENICNLKKHEGDWLLRVDIVEKGDTLQLVEQESEGHCNTECKTLQHACQEVVGYHDTDIAEYLYN-----------SKPICKDLTKACPPP---VPTDRIPGEPFVPKSSKEAEMDKILKSMEGVPGA-----PGMKVYSKEDL 168
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: F0Y4P8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P8_AURAN)

HSP 1 Score: 77.0 bits (188), Expect = 8.420e-11
Identity = 60/206 (29.13%), Postives = 93/206 (45.15%), Query Frame = 3 
Query:  147 AVKGDLPAIKCGVCEALMDVMHEKVASLRADAPY----GK----------VHEDDISGLIEEACDPHKVSGRWITEFDIKEEGG---------------------YLEL---KRPGGMSHCKEECETIAKSCASLVGEDL-DVEELVVALWKNELGAEGLRKKGCKEWSERCSGKRTRV-PKGRKDYPFEEKSTKDFEMEELMESL 644
            AVKGDLP I+C VCE +   +  +    R  AP     GK            E D++ L+   C+  K  G W+   D+ E  G                     +L++   +R G +     E  T  +SC  L  +D+ DVEELVV LW+ ++  +  +K  CKE S RC   R  V  +GR+D+ ++ +     + E +ME++
Sbjct:  162 AVKGDLPCIRCDVCEIVATELWREATKQREAAPLTAASGKPGEKKRKVSTFSEADVNELVVGVCNRRKEMGEWLWYVDLVESQGPPGEGSAWRGLTKKEKASNENFLQVYRAQRGGPIRKWDRESATAKRSCDLLFDDDIGDVEELVVPLWRGDVDEKAFKKLACKELSGRCGKDRKPVNAQGREDFEYDAQDKSLLDTERMMENM 367
[Close]
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Match: A0A7S2CPR7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPR7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.900e-8
Identity = 59/203 (29.06%), Postives = 85/203 (41.87%), Query Frame = 3 
Query:  153 KGDLPAIKCGVCEALMDVMHEKVASLRADAPYGKV-------------HEDDISGLIEEACDPHKVSGRW------------------------ITEFDIKEEGGYLELKR-PGGMSHCKEECETIAKSCASLVGEDLDVEELVVALWKNELGAEGLRKKGCKEWSERCSGK-RTRVPKGRKDYPFEEKSTKDFEMEELMESL 644
            K DL  I C VC  +++ + E     RA+AP   V              ED++  ++ + C   K  G W                        IT+ + K  G YL ++  P        E  T+ +SC  L  ED+DV+EL VALWK EL    L    C+E S  C  K R ++   R D  FE    +  E E++M+S+
Sbjct:   47 KYDLKLIGCDVCRFVVEQVREATEEKRAEAPIVSVAVRPGKKERRSSFSEDEVQEILGDVCHRKKKVGAWLWRTDLVEHTAKSTKHNQSFVYRPITKSEKKNGGSYLLIEHHPDYYGVWDREKATVQRSCERLF-EDMDVDELSVALWKGELDEAALVSLTCEELSNSCGKKNRPKLMLERDDIAFEVTDAQLVETEQMMQSM 248
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig622.17065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LP04_ECTSI7.750e-8361.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A830HUM6_9CHLO8.610e-2136.51DUF3456 domain-containing protein n=1 Tax=Pycnococ... [more]
A0A426ZB01_ENSVE1.680e-1733.18Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A7J7D9W8_TRIWF2.060e-1733.50Uncharacterized protein n=1 Tax=Tripterygium wilfo... [more]
A0A804JLC9_MUSAM4.750e-1734.55Uncharacterized protein n=2 Tax=Musa acuminata sub... [more]
A0A8J5G0C8_ZINOF6.360e-1533.67Uncharacterized protein n=3 Tax=Zingiber officinal... [more]
A0A8J5HXD6_ZINOF8.790e-1431.94Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A097PST6_CABCA1.680e-1230.93AT4G29520-like protein (Fragment) n=1 Tax=Cabomba ... [more]
F0Y4P8_AURAN8.420e-1129.13Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2CPR7_9STRA3.900e-829.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig622contigF-serratus_M_contig622:395835..403616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.3
Seed ortholog evalue2.2e-70
Seed eggNOG ortholog2880.D8LP04
Hectar predicted targeting categorysignal peptide
EggNOG OGs28MTK@1,2QUBV@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007090.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1902
Cds size759
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931929.5136478-UTR-F-serratus_M_contig622:395834..3958901622931929.5136478-UTR-F-serratus_M_contig622:395834..395890Fucus serratus maleUTRF-serratus_M_contig622 395835..395890 +
1690964062.229316-UTR-F-serratus_M_contig622:395834..3958901690964062.229316-UTR-F-serratus_M_contig622:395834..395890Fucus serratus maleUTRF-serratus_M_contig622 395835..395890 +
1622931929.707097-UTR-F-serratus_M_contig622:402529..4036161622931929.707097-UTR-F-serratus_M_contig622:402529..403616Fucus serratus maleUTRF-serratus_M_contig622 402530..403616 +
1690964062.3294382-UTR-F-serratus_M_contig622:402529..4036161690964062.3294382-UTR-F-serratus_M_contig622:402529..403616Fucus serratus maleUTRF-serratus_M_contig622 402530..403616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931929.5335102-CDS-F-serratus_M_contig622:395890..3959901622931929.5335102-CDS-F-serratus_M_contig622:395890..395990Fucus serratus maleCDSF-serratus_M_contig622 395891..395990 +
1690964062.242108-CDS-F-serratus_M_contig622:395890..3959901690964062.242108-CDS-F-serratus_M_contig622:395890..395990Fucus serratus maleCDSF-serratus_M_contig622 395891..395990 +
1622931929.5564687-CDS-F-serratus_M_contig622:396638..3967361622931929.5564687-CDS-F-serratus_M_contig622:396638..396736Fucus serratus maleCDSF-serratus_M_contig622 396639..396736 +
1690964062.2628264-CDS-F-serratus_M_contig622:396638..3967361690964062.2628264-CDS-F-serratus_M_contig622:396638..396736Fucus serratus maleCDSF-serratus_M_contig622 396639..396736 +
1622931929.577114-CDS-F-serratus_M_contig622:400413..4005061622931929.577114-CDS-F-serratus_M_contig622:400413..400506Fucus serratus maleCDSF-serratus_M_contig622 400414..400506 +
1690964062.274283-CDS-F-serratus_M_contig622:400413..4005061690964062.274283-CDS-F-serratus_M_contig622:400413..400506Fucus serratus maleCDSF-serratus_M_contig622 400414..400506 +
1622931929.621388-CDS-F-serratus_M_contig622:400783..4008581622931929.621388-CDS-F-serratus_M_contig622:400783..400858Fucus serratus maleCDSF-serratus_M_contig622 400784..400858 +
1690964062.2853255-CDS-F-serratus_M_contig622:400783..4008581690964062.2853255-CDS-F-serratus_M_contig622:400783..400858Fucus serratus maleCDSF-serratus_M_contig622 400784..400858 +
1622931929.6419737-CDS-F-serratus_M_contig622:401116..4011971622931929.6419737-CDS-F-serratus_M_contig622:401116..401197Fucus serratus maleCDSF-serratus_M_contig622 401117..401197 +
1690964062.2958567-CDS-F-serratus_M_contig622:401116..4011971690964062.2958567-CDS-F-serratus_M_contig622:401116..401197Fucus serratus maleCDSF-serratus_M_contig622 401117..401197 +
1622931929.6618838-CDS-F-serratus_M_contig622:401849..4020181622931929.6618838-CDS-F-serratus_M_contig622:401849..402018Fucus serratus maleCDSF-serratus_M_contig622 401850..402018 +
1690964062.306588-CDS-F-serratus_M_contig622:401849..4020181690964062.306588-CDS-F-serratus_M_contig622:401849..402018Fucus serratus maleCDSF-serratus_M_contig622 401850..402018 +
1622931929.6836789-CDS-F-serratus_M_contig622:402386..4025291622931929.6836789-CDS-F-serratus_M_contig622:402386..402529Fucus serratus maleCDSF-serratus_M_contig622 402387..402529 +
1690964062.317639-CDS-F-serratus_M_contig622:402386..4025291690964062.317639-CDS-F-serratus_M_contig622:402386..402529Fucus serratus maleCDSF-serratus_M_contig622 402387..402529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig622.17065.1prot_F-serratus_M_contig622.17065.1Fucus serratus malepolypeptideF-serratus_M_contig622 395891..402529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig622.17065.1

>prot_F-serratus_M_contig622.17065.1 ID=prot_F-serratus_M_contig622.17065.1|Name=mRNA_F-serratus_M_contig622.17065.1|organism=Fucus serratus male|type=polypeptide|length=253bp
MRALTVVTLVAVAIPLNAQFGGMPPKERSSAVKGDLPAIKCGVCEALMDV
MHEKVASLRADAPYGKVHEDDISGLIEEACDPHKVSGRWITEFDIKEEGG
YLELKRPGGMSHCKEECETIAKSCASLVGEDLDVEELVVALWKNELGAEG
LRKKGCKEWSERCSGKRTRVPKGRKDYPFEEKSTKDFEMEELMESLGGMG
GMGGMGGPGMQMYTPDQLGAMQEMMGDMGGMDDPYGDMGGFGMGGDGGFG
EF*
back to top

mRNA from alignment at F-serratus_M_contig622:395835..403616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig622.17065.1 ID=mRNA_F-serratus_M_contig622.17065.1|Name=mRNA_F-serratus_M_contig622.17065.1|organism=Fucus serratus male|type=mRNA|length=7782bp|location=Sequence derived from alignment at F-serratus_M_contig622:395835..403616+ (Fucus serratus male)
TTGACACCTGAACCCCACATCCAGTTTGGATCAGAGAAAAAGGAAAGGAA
CATAAAATGAGGGCGCTGACGGTGGTGACGCTTGTTGCAGTGGCCATTCC
TCTCAATGCCCAGTTCGGTGGCATGCCCCCGAAGGAGCGGAGCAGCGCCG
TCAAAGGTGAGGTCGATAAGAAAAGACCTACGCTTGTACTGTTAGTTGTC
TGTACAAAATGTGTTGATGGTCTCTGGAGGTACTAATACTGCCAATACTA
TTTTACTATTGATTTATGCGTTACATATTTTCTTTCTATTATACTGTCTT
GTGATTTGTGATACAACACTGGTATTCCGAGGACAGCCGACCCAGAGAGA
GACGCAATGTCCTGACAACTCTTATCTCACGGCAAGCTTGGTACTACACT
ACAACAATTGCAGTTTTGAAAACTGAGTCATCGATGTTGTCGAAGTACTC
ACGATCCAGCCGTGGATGCAACTACGTGCGACGCGCATCAAACTTCCAAC
GATTCAAGTCCCCTACCGTCCAAAATGCTGCCGTTCACCCCTACCAGTAC
ATACTTGGACATGGACTGTACCCACTTGTGCTCGTAGACAACTATTATAT
ACAAGGCCGACGGCATCGACTCCATTGAACAGGTTAACCCCTACTGACCA
GCATATTACGAGGACAGGGGAATACTCATTTTCACTCTTTAGCTGACCAT
GAACAGGATGGGCAAACTCACCCGGTTGATCCATACCCTGCTACATATAT
GTGATGACCTGGAATGGTCGTTCCCAACTGATGTGGCTAACCTCGCGCTC
TTAGGTGATCTCCCGGCCATCAAGTGCGGCGTCTGCGAAGCTCTGATGGA
CGTCATGCATGAAAAGGTTGCCTCATTGCGTGCGGATGCTCCCTACGGCA
AGGTGTGTTTCTTGCTTAGCGTCATCTTCTACAGCATACAGTTACAGTAT
TCATCCGGGAAGATCGCATCGCTGCAAATAATAAATACGACCTGTATATT
CCCAACCACGAACGAGATCAAAAATCGTTCAGACAGAGGAGGTCTCCCGA
CCATCGTTCCTGCCCACATTCTGCCGTGCATAGGTCGCGCGCGGTTTCTC
TACTTGGAGATAATGTGGAGAGAAATATTCGTCGCGACCAAGCTGTATCA
AGTATGCCCATTACTTTGCACCCCAAAAACAGCGTTGCACATATGAGGGC
ATATATGATAGATGCTCGAGATCGGACACACGTGAGCGGAGGAACTGAAC
CGAGTGGGAGGTCAGCAGATGCTTTTTGATTGGGCCACGTCTCCTTGCCC
TTGATATAGCTGCAGAAGGTCTATAGATGCGTTCAGATTTTTCAACAACG
TTTCTTCCCGATGCTACTAAATACCTGGTAGGCTAATACAATTGAGGAAT
ATAACCCAATTAGTCTATATCCCATGAAGAGGTTTTGTTACAGCCAATGG
TCCCACCTAAACGTTTTGACCATTTCCCCCCCCCGATAGGGTGGATCAGA
AGGTTTACTGGTGGATGTGTTCAGATTTTCCTTTAAACACATACCGGCAC
AGTTGTAGTGTTTAAAGAAAAATCTGAACGTATCCAAACCTTCTGAGCAT
CCCCCAGACAGGGGAAAATAATGTCAAAACGTTTTGGTGGGAACATAGGC
TGCCAAGCTCAGAGGGTCTATATATGCGTTCAGATTTTTCTTTAAAAACC
TCTTCATGGCACTTAATCGGGTTCCCCGATGGCAGTAAGATAGGGTCGAC
AGTATCGTGTCGGGGAGAATTGTTGACCAAAGGTTTGGATGCTGTGGAAG
GTTTGGATGCGTTACCTAAAATAAGATATTTATATAACCACCTATGAACA
GAGTAACAACACGAATGTACACTGCAGTACAGACAGCAGTAATATTATAG
TAGAAGTAGTATTAGGCTGCATACTTGTAGTGCTTGCCCAACAGACTTTG
ATCGATCACCGACAGCGACAGCGTACGTAGAAATAACGATTGCTATCTAT
AGTTTTTACAAGTATTCAAGTAATGTAGAGCTACACTATATACTATTACT
ATTGGGTTCGTTGGTGTGGTGGGCGTCGGTGAGTGGTGGGTGTTGTGTGG
TGGTGGTGGTGGTAGTCGGGGGGCGAAGCCAAGGGTGGGTGGCTGTGCGT
TGGGTGTTGGGAGCTGGGTGTTTCGAGGCTTGGGCCAAGAGTTTGCCAAG
ATGGCACATTTCCGGCCATCTGAAAATCTTGAGAATATTTACAGGCAACA
TGTTGTACTTCTACAAAACACAGACCACCTACACACACATCAGATGCCCG
GTTCACAACATGCAGATGACCCCGAGCACAAGCCCATGCCGTGAACATTC
TTCCAGTTATTTTTATTTATAACACGAGTATCACGTTCAAGTGCGCTCCC
GTACCACCCGACCGACGCTACCAGTAGGAAGCATCCATCGTTCTCCAACA
ATTGAAATACTGGTATTAATATTGACGTTAGCTCAGAGGTAACCTCGTAA
CCTTCTGACACGTTGGGACGTGAGTTCGATTCCGGCGAACGGGATTTTTC
TCACGAAAAACTAAAAACTGAAATAAAATGCCCAGCGAGTGGAGAACGAT
TAAATCGCTAGCACACAAAATTCGACTTCACGGTCGACGAGGGAAAAGAA
TGGCTGAATCCTTCTCGCGATAAAAGTTGAGGCACGCACCGCAGAAGGAA
AGTGAATGAGAAATACTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGT
ACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACACAGAAAA
CACACACGCACATTATAGGTCACTCCTCAGTACCAGCACGTGCCCTCTCC
CTCCGAAACCTGGTTTCGGGGTATGAGTGTGGGAGGGTCTTTCCGTCGGG
TGTAGGGCCGGACTCGCCCTCAAGAGGTGCAGCCAACTGGCTGCCTTCGC
GATTCAGCCTATAGGTTGAGACGCGGCGGCGGTATGGTTGGCTGAAGATT
ATGGTGTTCCCAGGTGTGCGCCTCTTCCGAGCCTCAATTTGGTGGCCTTC
GGGAGGGTAGCGGCACGCGAGAGGCAGGGAGCACTGTCGCGGAGAGCCTG
GTAGTTCTCTACCGGGTGGGTACGCACCAGATTAGGCGAAGGCGGAGGGC
AACTCGATCGTCGACGAGCCAGGGGAGGGCCGAACCCCTGTGCGCGAGAA
TCACAGGCGCGAACCGGGAGGTTTCTGAGGAAAAGTCGACATCTGACCAC
GGTCATTTTTCTTCCTACGAGGGCCACAAGGAGCGGCGAACGGGCAAGAT
TCGTGGGGCTTTTTTTAGGGATGCACAGGGCTTCGGACGGCTGGATACTG
GCTCGCGCGCCGGCTTCACCAGCTCAAGGCCTCCACCACCATGGACCTCG
GTATTTCAATTTTCCTTGTTTCTGTGCGTTTGTGTGGCCTTGAGAAACTT
GGACTTTTTGTTGATCTAAACTGGTTGGAGCGTAATTCTTCCGGTTTTTT
GCTGAGAACGCTGGTCGTGGGTAGGCGATAACAATCCGAGTCGATCGAGG
TTGCTCTCGACATGGAGTAAGGATGTTTGATGAACCGTTTTGTTTGGTCG
GTGCCATTGCTTGTAGAGTCGCATAACTTTTTGTCGCGATTTGGATCCCT
GTTGGTCTGAGTAGCGGGTTGTCACCATGATGTGGCCCGTTGACCTTTGC
ACCTCTTTGTGACCACGTACCGGATTGGCAACCACGTATATTACTAGGTA
TGGTTGAGGCCCGATCGGTTAATGTGAAGAATACAACAACACAACCTCGG
GAATCTGTGGCCCCTCTTGCTTTTTCCCCGGAAGAATTATTATGGCTCGA
ATTGGGAACGTGCGGAACGTTCTTTCTAACTCCAGCGAAGTTTCTTTTGC
GATGCGGTACACGTCGGCTTTTAAAGCAGTGAATGCCTTCATTCCTCCCT
CCAACATCCGATCCCTGTGTCCAAACACGCCTCTCACAAGTAATTTGCTC
GAGGGGTGTGAATCGGACTTGCATCAATCGCCAAGACAACGATAATGGTA
TGATAAGTAACTCGTTTCCTGTGCCTCGCCAAGCCAGCAGTGCGCTTATC
GTAGAAGGTTAAGGTTTTCAAATCCCACTATGTCATTCGTCGCCCGAGTG
GTCTATTAATAGTAGGTAACCTGCATAGTGGTCTATTAATAGTAGGTAAC
CTGCACACCTGCTAGTGCGGAAGTCGTGAGTTCGATTCTTAGCTTAAGCA
GAATTTGTGTTCTTTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGT
AAAATTCAACCATTAGTTGACGAGTTGTAAGAGTGCTGAACTTGCATCGC
GATAAAAATTGCAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTG
ACCACAGGCAGGATGGTAATTAGAGGTCCATCGGCTATAAGTGTGATTTA
AAAAACAAAAACAAAAAAAACTATAATGTCAAGTACGTCCGGTACCTGTA
GTCGCCAACCCCCCCCCCTTCAATTCGAAATAATTCGATTGTCGACGCCA
ATATATATATATTATATGTGTCGTGGCAGGTTCACGAGGACGACATTTCG
GGGCTGATCGAGGAGGCGTGCGACCCTCATAAAGTCTCCGGCCGATGGAT
TACGGAGTTCGACATCAAAGAGGTACAGGAGATGGATCAGGTGTCAAGAG
TTACGCTTGCGGGGTTGTTAGGTTGCTTAACATTACCTCTGGCTTCAGCT
GGGCGTCGGTCCCACCGACCTCCGGGTGGGGTTTCTAAAAGGTTTCATTG
CATCTTACGATTCTGTCCGAGGCGGGAATCTGGGACTGCTTTCCTCGTCT
CGATCCTCTCACCACTGGAGTGTGATGACCCTCCAATATTTTTACGAAAA
ACGAGTTGAATATAACACGTGCAACACATGAATTACATATATACTGCAGG
AGGGTGGATACTTGGAGTTGAAGAGGCCAGGAGGCATGTCTCACTGCAAG
GAAGAGTGTGAGACTATCGCCAAGGTGAGACATAAAACGTCCAGCACACA
TAGACATAATGAGAGAGAGAGAGAGAGAGAGAGGCACGCGCCCAAGCGTA
AGGTGACGTTGGGAAAAGAAAAGTGGAACACCGTGCGCCTGGGATGGCGT
GTCAAGTGGGTCTCGTTTGTGATGGTGCACATCCTTATTCGCTGACCAGT
CGCGCAGGATGATCATTCCAACAGTTTCCGCCCCCTGGCGGGATGTCCTC
TGCCCCTTATTCCCAAACGTTCCGCCGAGCAGAGCTGCGCGTCGCTTGTG
GGAGAGGATCTCGACGTCGAGGAGTTGGTCGTGGCCCTTTGGAAGAACGA
ACTCGGAGCGGAGGTAACCACCCTTAAAACCTACCAGTTGTACTTGACGG
GACTGCTCATGTACTATACCGTACCAAGGTTTCAGACTGGAATGCAGAGA
AGCGTTAAACTCGATACGTCGTAGTAGCCAGGTTTACCGATGGTGCTGTA
TCCTTCATGAACGTTAAATATAGATATAGCACACACGCCAGGCAGAAGAT
GAAGAAGCGCCAAACTCATTATATTGTTTGGTGGTTGTAGAGTACTCGTC
GCCCGAGTGGTCTAGTAGGTAACCTGCACACCTGCTAGTGCGGGAGTCGT
GAGTTCGATCCTTACCAAAGTAGGATTCGTGTTTTTTCTCTCGTAACGGA
AATCGTGGGAACGTGAGTAAGTAAAATTCAATCATTGGTTGACGAGTTGT
AAGAGTACAGAACTTGCGTCGCGATAAAAATTGTAAGGCGTGAACCGAGG
AGAGATGGTAAGATCCTTTGCGACCACAGGCAGGATGGTAATTATGAGGT
CAATCGGCCATAAGTAGCGGGGCGTTCCACGAGAGGCCGTTCCGCCTGAA
GCCGCGTAATTATTTTGTACGGAATGAGTTTTTCTGGCCCACCTCGCTTT
ACCCGGTCCCTTGGTCCCGTTCCACAACTTTTTTTTTTCCCCGTTTTTCC
CGTTCTCTCCTCAAGGGGCTGCGaAAAAAAGGTTGCAAAGAATGGAGTGA
AAGATGCAGCGGAAAACGGACGAGGGTCCCCAAGGGCCGGAAAGATTACC
CGTTTGAAGAGAAGAGCACAAAGGACTTCGAAATGGAAGAGCTCATGGAG
TCTCTCGGCGGCATGGGGGGTATGGGCGGCATGGGTGCGTGCGTGTTCCA
CTCTCCCGTGATGCCTTGTTGGGAAGTTAACAGGGAGGAGGCGGAGACAA
ATGGATCACGCCTTTTTGTATCCCTCAACAACTATTTGGCCCTCTCTAGT
GTAACTATAATATCAATAATAACCCATCACAACATATCCAGGATCTCTGA
TTCTTTCGAGGAAAACCTCGCTTTGTGAGCTTCCAAATAGAGACAAGTTG
AATTTTCATATGTACCGGTAACACATTTCGACACCCTTTTTACAGTAGCG
TAGCGCTCTACGGGCTTCCCCCACCCTCTTCCTCCAGCAGAACGACGACA
AATTGCTTTTATCATTTTCCAATCATTATCCCACTATCTCCCCCGTACGC
AGGTGGTCCCGGGATGCAAATGTACACTCCAGATCAGCTCGGCGCCATGC
AGGAGATGATGGGAGACATGGGAGGCATGGACGACCCTTACGGCGACATG
GGCGGCTTCGGCATGGGAGGAGATGGTGGTTTCGGGGAGTTCTAGTCGAG
AAAAATAAGGCGGCATGTGCCCGCTACGGGAAACGGGGAGGGGGAGTTGA
GATATATTGCCTTTTTATTACTACTGGGTGTACTGGTGTGTGCTTGTTCA
CTGTAATGAAGTAAGCTTTTGCCCTCATGCCCTCGTGACGTTCGTGGGTA
GAGGAGAGGGACTTGCGGTGTCACAAGTGCTGCCTGCCGTTGGCGTGGAA
CGTGGCTCTCGTGAACCCCATTTACTTCGTACTTGTTTTCCCTTGATACT
CTACAGTAGTCTTGATGCCCGATTGTGTTTGTTGGTCGTGGTCGTGGATA
AAACAGCGTGACTTTTCCTGGCACAGCACACCTGTCCCTAAACTTTCACG
TTTCGCAGCAGATCGAAAATCGAGCCTCGGCGTTTGCACACACTAAATAT
ATAATCATGGTTTATGGCGCAAACAAAGTCAGGTGTGGATTTCACTTGGT
CAGCGCGGGCTGAATATTTGTGGGAGAAACCTTCCTTCCCAATGTTGAAT
GTGTAAAGCAGGAGGCACAGACATCAGATACAGATGCTGGCGTTGATTGG
GGCAAGGTTTGATATCACATGGCGCTGTTTTGGTGTCTCACTTGGTTATC
GGAATGGTCACACTATCAAAGCAGATCTCGACTGTGGTTGCGGTGAGAAG
GCAACGCACAGAAGAAACGAATGTAATCGGTGGTCATATAACTGGGCGGT
GAAACGCTTACGCGCGACGCCTTACAGTTCGACAGTTAAATTGACAAAAG
GACAGGAGGCAAACCGCCCTCCCCGCCTGGTGAAAGAGAGCCAGGGAGAG
GATTGATTGATCTCTACGTGGTATCGAGACAGGCCAGTGCGCTTCCCGTG
GGGCCTATTGACACTCGTTGAAGAAGTTGCACGATGCCGGAGCTATACCC
GGTACGTCATTATCAATATAATACAATACAATACAGTACTGGTATATTTT
TTCTCGCGATGCAAATTCATATTATAAACACGTAAACCGTCGATTTCCCC
AACACGTCCGTAACGTTTTACGATCATCACACTTCGAAATATGTGTACGG
TACGGTGGTAGTACAAAGGCGCGCGACCCCCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig622:395835..403616+

>mRNA_F-serratus_M_contig622.17065.1 ID=mRNA_F-serratus_M_contig622.17065.1|Name=mRNA_F-serratus_M_contig622.17065.1|organism=Fucus serratus male|type=CDS|length=1518bp|location=Sequence derived from alignment at F-serratus_M_contig622:395835..403616+ (Fucus serratus male)
ATGAGGGCGCTGACGGTGGTGACGCTTGTTGCAGTGGCCATTCCTCTCAA
TGCCCAGTTCGGTGGCATGCCCCCGAAGGAGCGGAGCAGCGCCGTCAAAG
ATGAGGGCGCTGACGGTGGTGACGCTTGTTGCAGTGGCCATTCCTCTCAA
TGCCCAGTTCGGTGGCATGCCCCCGAAGGAGCGGAGCAGCGCCGTCAAAG
GTGATCTCCCGGCCATCAAGTGCGGCGTCTGCGAAGCTCTGATGGACGTC
ATGCATGAAAAGGTTGCCTCATTGCGTGCGGATGCTCCCTACGGCAAGGT
GATCTCCCGGCCATCAAGTGCGGCGTCTGCGAAGCTCTGATGGACGTCAT
GCATGAAAAGGTTGCCTCATTGCGTGCGGATGCTCCCTACGGCAAGGTTC
ACGAGGACGACATTTCGGGGCTGATCGAGGAGGCGTGCGACCCTCATAAA
GTCTCCGGCCGATGGATTACGGAGTTCGACATCAAAGAGGTTCACGAGGA
CGACATTTCGGGGCTGATCGAGGAGGCGTGCGACCCTCATAAAGTCTCCG
GCCGATGGATTACGGAGTTCGACATCAAAGAGGAGGGTGGATACTTGGAG
TTGAAGAGGCCAGGAGGCATGTCTCACTGCAAGGAAGAGTGTGAGACTAT
CGCCAAGGAGGGTGGATACTTGGAGTTGAAGAGGCCAGGAGGCATGTCTC
ACTGCAAGGAAGAGTGTGAGACTATCGCCAAGAGCTGCGCGTCGCTTGTG
GGAGAGGATCTCGACGTCGAGGAGTTGGTCGTGGCCCTTTGGAAGAACGA
ACTCGGAGCGGAGAGCTGCGCGTCGCTTGTGGGAGAGGATCTCGACGTCG
AGGAGTTGGTCGTGGCCCTTTGGAAGAACGAACTCGGAGCGGAGGGGCTG
CGaAAAAAAGGTTGCAAAGAATGGAGTGAAAGATGCAGCGGAAAACGGAC
GAGGGTCCCCAAGGGCCGGAAAGATTACCCGTTTGAAGAGAAGAGCACAA
AGGACTTCGAAATGGAAGAGCTCATGGAGTCTCTCGGCGGCATGGGGGGT
ATGGGCGGCATGGGGGCTGCGaAAAAAAGGTTGCAAAGAATGGAGTGAAA
GATGCAGCGGAAAACGGACGAGGGTCCCCAAGGGCCGGAAAGATTACCCG
TTTGAAGAGAAGAGCACAAAGGACTTCGAAATGGAAGAGCTCATGGAGTC
TCTCGGCGGCATGGGGGGTATGGGCGGCATGGGTGGTCCCGGGATGCAAA
TGTACACTCCAGATCAGCTCGGCGCCATGCAGGAGATGATGGGAGACATG
GGAGGCATGGACGACCCTTACGGCGACATGGGCGGCTTCGGCATGGGAGG
AGATGGTGGTTTCGGGGAGTTCTAGGTGGTCCCGGGATGCAAATGTACAC
TCCAGATCAGCTCGGCGCCATGCAGGAGATGATGGGAGACATGGGAGGCA
TGGACGACCCTTACGGCGACATGGGCGGCTTCGGCATGGGAGGAGATGGT
GGTTTCGGGGAGTTCTAG
back to top