mRNA_F-serratus_M_contig6219.17051.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6219.17051.1
Unique NamemRNA_F-serratus_M_contig6219.17051.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6219.17051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6219contigF-serratus_M_contig6219:25847..26744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size898
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6219.17051.1prot_F-serratus_M_contig6219.17051.1Fucus serratus malepolypeptideF-serratus_M_contig6219 25883..26437 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931926.431895-UTR-F-serratus_M_contig6219:25846..258821622931926.431895-UTR-F-serratus_M_contig6219:25846..25882Fucus serratus maleUTRF-serratus_M_contig6219 25847..25882 +
1690964060.864885-UTR-F-serratus_M_contig6219:25846..258821690964060.864885-UTR-F-serratus_M_contig6219:25846..25882Fucus serratus maleUTRF-serratus_M_contig6219 25847..25882 +
1622931926.4760835-UTR-F-serratus_M_contig6219:26437..267441622931926.4760835-UTR-F-serratus_M_contig6219:26437..26744Fucus serratus maleUTRF-serratus_M_contig6219 26438..26744 +
1690964060.8940196-UTR-F-serratus_M_contig6219:26437..267441690964060.8940196-UTR-F-serratus_M_contig6219:26437..26744Fucus serratus maleUTRF-serratus_M_contig6219 26438..26744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931926.4499474-CDS-F-serratus_M_contig6219:25882..264371622931926.4499474-CDS-F-serratus_M_contig6219:25882..26437Fucus serratus maleCDSF-serratus_M_contig6219 25883..26437 +
1690964060.8764482-CDS-F-serratus_M_contig6219:25882..264371690964060.8764482-CDS-F-serratus_M_contig6219:25882..26437Fucus serratus maleCDSF-serratus_M_contig6219 25883..26437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6219.17051.1

>prot_F-serratus_M_contig6219.17051.1 ID=prot_F-serratus_M_contig6219.17051.1|Name=mRNA_F-serratus_M_contig6219.17051.1|organism=Fucus serratus male|type=polypeptide|length=185bp
MDPCGAGAEQFFGGRNDVETGGVVESRSLAAAAAAAEAATACHPVGEDDG
EVFEQRQQEEGKVLDKDKGEEDVEDIEGGRVRVGVSLERERPGGAEETPR
EKEASLSLGDGNCGDGQCEAAALPRRAGEATDSAPLEDTLAEFSTARTDV
SVALNDRGAAGAGVGAGMREDASSQAIAPGDESV*
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mRNA from alignment at F-serratus_M_contig6219:25847..26744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6219.17051.1 ID=mRNA_F-serratus_M_contig6219.17051.1|Name=mRNA_F-serratus_M_contig6219.17051.1|organism=Fucus serratus male|type=mRNA|length=898bp|location=Sequence derived from alignment at F-serratus_M_contig6219:25847..26744+ (Fucus serratus male)
GAGCCGAGGGAGGGGGCGGAGGGGGGCGACGTTGCGATGGATCCGTGTGG
TGCTGGCGCCGAGCAGTTTTTTGGGGGGAGGAATGACGTCGAGACCGGGG
GTGTTGTGGAATCACGATCATTGGCCGCAGCAGCAGCGGCGGCGGAGGCG
GCAACTGCTTGCCATCCTGTAGGGGAAGACGATGGCGAGGTTTTCGAGCA
GCGGCAGCAGGAGGAGGGAAAGGTGCTGGACAAGGATAAGGGAGAGGAAG
ACGTGGAGGATATCGAGGGTGGCAGGGTGCGGGTTGGCGTGAGCCTAGAG
AGAGAGCGCCCAGGGGGAGCGGAGGAAACGCCTCGGGAGAAGGAGGCTTC
GTTGAGCTTGGGAGACGGCAACTGCGGCGACGGACAGTGTGAGGCGGCGG
CTTTGCCTAGAAGGGCGGGGGAGGCGACCGATTCAGCGCCATTGGAGGAC
ACTCTGGCCGAGTTTTCCACCGCGAGAACAGATGTAAGCGTGGCTTTGAA
CGACCGTGGGGCGGCAGGAGCTGGAGTGGGAGCGGGGATGCGGGAGGATG
CGTCTTCGCAAGCTATTGCGCCGGGAGATGAATCTGTCTAAACTGGAAAA
GAGCAGAGGCTGCTTGTCCGTCGTACGCCAATCTCTATATCCCCCGTCGC
CATGGGTGCCTTCGGCTTTGGCGTCTTGGGCCAATTTTGTGTCCTCCATC
TCTTTGTCGCCCGTTCACTCTCTCTCTGGTTGTTGTTATTATTGTTATGC
ATGTGCTGGTACATATATAAATACATAAATATATTGTCACGGCATGGTTA
ATGGTTAATGGCAGCAGAATTCAGAGAAGAGGGCAGGCGATGCTACATAG
TATAAATAGTATGAATGGTAGACTAAAGCTAGGCCGAACCAAAAAATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6219:25847..26744+

>mRNA_F-serratus_M_contig6219.17051.1 ID=mRNA_F-serratus_M_contig6219.17051.1|Name=mRNA_F-serratus_M_contig6219.17051.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig6219:25847..26744+ (Fucus serratus male)
ATGGATCCGTGTGGTGCTGGCGCCGAGCAGTTTTTTGGGGGGAGGAATGA
CGTCGAGACCGGGGGTGTTGTGGAATCACGATCATTGGCCGCAGCAGCAG
CGGCGGCGGAGGCGGCAACTGCTTGCCATCCTGTAGGGGAAGACGATGGC
GAGGTTTTCGAGCAGCGGCAGCAGGAGGAGGGAAAGGTGCTGGACAAGGA
TAAGGGAGAGGAAGACGTGGAGGATATCGAGGGTGGCAGGGTGCGGGTTG
GCGTGAGCCTAGAGAGAGAGCGCCCAGGGGGAGCGGAGGAAACGCCTCGG
GAGAAGGAGGCTTCGTTGAGCTTGGGAGACGGCAACTGCGGCGACGGACA
GTGTGAGGCGGCGGCTTTGCCTAGAAGGGCGGGGGAGGCGACCGATTCAG
CGCCATTGGAGGACACTCTGGCCGAGTTTTCCACCGCGAGAACAGATGTA
AGCGTGGCTTTGAACGACCGTGGGGCGGCAGGAGCTGGAGTGGGAGCGGG
GATGCGGGAGGATGCGTCTTCGCAAGCTATTGCGCCGGGAGATGAATCTG
TCTAAATGGATCCGTGTGGTGCTGGCGCCGAGCAGTTTTTTGGGGGGAGG
AATGACGTCGAGACCGGGGGTGTTGTGGAATCACGATCATTGGCCGCAGC
AGCAGCGGCGGCGGAGGCGGCAACTGCTTGCCATCCTGTAGGGGAAGACG
ATGGCGAGGTTTTCGAGCAGCGGCAGCAGGAGGAGGGAAAGGTGCTGGAC
AAGGATAAGGGAGAGGAAGACGTGGAGGATATCGAGGGTGGCAGGGTGCG
GGTTGGCGTGAGCCTAGAGAGAGAGCGCCCAGGGGGAGCGGAGGAAACGC
CTCGGGAGAAGGAGGCTTCGTTGAGCTTGGGAGACGGCAACTGCGGCGAC
GGACAGTGTGAGGCGGCGGCTTTGCCTAGAAGGGCGGGGGAGGCGACCGA
TTCAGCGCCATTGGAGGACACTCTGGCCGAGTTTTCCACCGCGAGAACAG
ATGTAAGCGTGGCTTTGAACGACCGTGGGGCGGCAGGAGCTGGAGTGGGA
GCGGGGATGCGGGAGGATGCGTCTTCGCAAGCTATTGCGCCGGGAGATGA
ATCTGTCTAA
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