mRNA_F-serratus_M_contig62.17031.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17031.1
Unique NamemRNA_F-serratus_M_contig62.17031.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig62.17031.1 vs. uniprot
Match: D7FX64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX64_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 3.340e-35
Identity = 91/186 (48.92%), Postives = 115/186 (61.83%), Query Frame = 1 
Query:    1 SGLDIKYGENGYLCWSAFLLLITVLSAGPFYGAVVAALMAGGKAGGVEPFVVLVVSIFAARLIHSHFYC--PPEDDLKVDRKPYEEEIRDILFRKDPSKLHLVDAELEKFRGREKQLLRQYQMRYDP----PVRFDAKVGVASGSV---AGGXXXXXXG------SNNMQKSVLELAHEEEARRVQ 513
            SG+DIK+GE G+ CWSAF LLITVLS+    G V A L+A GK  GVEPF VL VS+  ++ + S+ +    P+DD  V RKPYEEEIR++LF+ DPS+LHLVD+EL +++GRE++LLR+YQ RY P    P   D     A G      GG      G       N  +  V E A EEE RRVQ
Sbjct:   22 SGMDIKFGEKGFYCWSAFSLLITVLSSSR-RGVVAAVLLAAGKGFGVEPFAVLTVSLLVSKALCSNAFSGNKPDDD-PVPRKPYEEEIRELLFQNDPSRLHLVDSELRQYKGRERELLRRYQARYAPDPPMPAANDGPGRTARGERRRGGGGMVDDNQGYHRGDSGNARRNDVKERAREEEQRRVQ 205
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BLAST of mRNA_F-serratus_M_contig62.17031.1 vs. uniprot
Match: A0A482SSH4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSH4_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 6.730e-5
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  217 DDLKVDRKPYEEEIRDILFRKDPSKLHLVDAELEKFRGREKQLLRQYQMRY 369
            DD  V  +P+E+EIR  LF+ DPSKLH VD+ L K++G+E +LLR+ + +Y
Sbjct:  114 DDATVKLQPFEKEIRQFLFKADPSKLHKVDSLLSKYKGKESELLRKLKTKY 164
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX64_ECTSI3.340e-3548.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482SSH4_9ARCH6.730e-550.98Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:977262..981016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_004450.1
Exons4
Model size2430
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17031.1prot_F-serratus_M_contig62.17031.1Fucus serratus malepolypeptideF-serratus_M_contig62 979119..980413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931922.859617-UTR-F-serratus_M_contig62:977261..9791181622931922.859617-UTR-F-serratus_M_contig62:977261..979118Fucus serratus maleUTRF-serratus_M_contig62 977262..979118 -
1690964059.1327925-UTR-F-serratus_M_contig62:977261..9791181690964059.1327925-UTR-F-serratus_M_contig62:977261..979118Fucus serratus maleUTRF-serratus_M_contig62 977262..979118 -
1622931922.9682677-UTR-F-serratus_M_contig62:980413..9804271622931922.9682677-UTR-F-serratus_M_contig62:980413..980427Fucus serratus maleUTRF-serratus_M_contig62 980414..980427 -
1690964059.1791508-UTR-F-serratus_M_contig62:980413..9804271690964059.1791508-UTR-F-serratus_M_contig62:980413..980427Fucus serratus maleUTRF-serratus_M_contig62 980414..980427 -
1622931923.0045574-UTR-F-serratus_M_contig62:980916..9810161622931923.0045574-UTR-F-serratus_M_contig62:980916..981016Fucus serratus maleUTRF-serratus_M_contig62 980917..981016 -
1690964059.1874127-UTR-F-serratus_M_contig62:980916..9810161690964059.1874127-UTR-F-serratus_M_contig62:980916..981016Fucus serratus maleUTRF-serratus_M_contig62 980917..981016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931922.8818429-CDS-F-serratus_M_contig62:979118..9794041622931922.8818429-CDS-F-serratus_M_contig62:979118..979404Fucus serratus maleCDSF-serratus_M_contig62 979119..979404 -
1690964059.145706-CDS-F-serratus_M_contig62:979118..9794041690964059.145706-CDS-F-serratus_M_contig62:979118..979404Fucus serratus maleCDSF-serratus_M_contig62 979119..979404 -
1622931922.9018247-CDS-F-serratus_M_contig62:979840..9798991622931922.9018247-CDS-F-serratus_M_contig62:979840..979899Fucus serratus maleCDSF-serratus_M_contig62 979841..979899 -
1690964059.1567092-CDS-F-serratus_M_contig62:979840..9798991690964059.1567092-CDS-F-serratus_M_contig62:979840..979899Fucus serratus maleCDSF-serratus_M_contig62 979841..979899 -
1622931922.9255683-CDS-F-serratus_M_contig62:980299..9804131622931922.9255683-CDS-F-serratus_M_contig62:980299..980413Fucus serratus maleCDSF-serratus_M_contig62 980300..980413 -
1690964059.1692789-CDS-F-serratus_M_contig62:980299..9804131690964059.1692789-CDS-F-serratus_M_contig62:980299..980413Fucus serratus maleCDSF-serratus_M_contig62 980300..980413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17031.1

>prot_F-serratus_M_contig62.17031.1 ID=prot_F-serratus_M_contig62.17031.1|Name=mRNA_F-serratus_M_contig62.17031.1|organism=Fucus serratus male|type=polypeptide|length=153bp
MAGGKAGGVEPFVVLVVSIFAARLIHSHFYCPPEDDLKVDRKPYEEEIRD
ILFRKDPSKLHLVDAELEKFRGREKQLLRQYQMRYDPPVRFDAKVGVASG
SVAGGGSAGSGGSNNMQKSVLELAHEEEARRVQENIDASIKRITRRIDRR
RS*
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mRNA from alignment at F-serratus_M_contig62:977262..981016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17031.1 ID=mRNA_F-serratus_M_contig62.17031.1|Name=mRNA_F-serratus_M_contig62.17031.1|organism=Fucus serratus male|type=mRNA|length=3755bp|location=Sequence derived from alignment at F-serratus_M_contig62:977262..981016- (Fucus serratus male)
AGTGGCCTCGACATAAAGTACGGCGAGAACGGGTACTTGTGCTGGAGCGC
TTTCCTACTGTTGATCACGGTCCTCTCCGCAGGACCTTTCTACGGCGCAG
GTACGCTCCTGGATAACTTGATTACTCTAGGCAAGGGGGGGGTGCATACC
TCATCGCGTGTGCTCGCCGACCCTTAGCATGATAAATGGCACATGCGAAA
TTTGCGAGTTGACCTGATTGCACAGAGGATGCAACCGTTAGGCAATGGAA
TGCCCTCTCACCCCTGTTTAGGCTCTACCAGGTACTACCAGGTACTTCTT
TATCTTTTGCGAAAATAAAAATGAATAATATTTGCAGTTTTGACGCCTCA
TAAAGTTAAGAAGAGGGGCAGGTTGTTCCATAAATGGGGTACGAAAAGTG
CTTGCAATAAATATAACCCCATCCCGGGCTGATGAAGATGGCAGGAGTTC
ATTCTTCTTTGTATCTGTGTAACGGTCGTCGGCCGATCAATGCCCGCAAG
CAAGCGCTGTCTTCAGTGAGAGCCGCGCCCTCTCTCTCAATCCTGTCCAT
CGTCCGTCAATCTTCACTTGGTGCTGTGTACTAAAACAGTCGTGGCGGCC
CTGATGGCGGGAGGAAAGGCGGGTGGGGTGGAGCCTTTTGTTGTTCTCGT
GGTGTCGATATTCGCCGCGAGGCTGATCCATTCGCATTTTTATTGCCCCC
CCGAAGACGACCTCAAGGTGAGTCGCATGTTTTGACCCATTTGCTGTTGG
AATGTTGCTCGTTGTTTTGTTGCCTGGTCTGTCATGACACACGCGGCTGT
TGTCTGTACGTGCGGTACATAGTGACACCTCGTGGGTTCCGGTGACAAGG
GGAAGGCCGGTGGAATAGCCCTAGAGCGCCGAGCAAAATGCGTGGGACCC
TTGAAGCATCGCATGGCAAGGTTTGTGTTTATTCAAAATAGTTAAACGAG
CTTTTTTCGAGGGGAAAGTGTGCCACCGATGCTATGCTATTCTGCATTTT
TACCTCGGGCGTTGTTTCTTTTATTGTTATTTGAGGGGTTGGGGGGCGGG
GGTTCAACGCTCCCGGTCGTGATGGGTAACCGCTTCGTGTGTTGCCCCCC
CTCCCCGACCGAGGCAGGTGGATCGAAAGCCCTACGAGGAGGAGATTCGG
GATATCCTGTTCCGCAAAGATCCAAGGTGACCGGACTTAAGTTACATGAT
TTTGCCAGACGCAAACGCTGAACATGGCTGTGGACATATTTTTGTATGCC
ACGGCAAACGAATTTTTGCACGGCTGTCCCGCCCTCGGTGCACCAGTGGG
AGGAGAGGAGGACACCGTAGTGACGGGTCGGGAGTCCCAAATACAGGATA
GCGACAGCAGCGTGTGGCGCCTCTTTCGCAGTGAGCCATCGTAGACCCTT
CCCCTGATTGACGCTAAAGAAGGCGGGACAGCCTCAAGATCAGTAGCCTC
TTTTCGTCTCCCTCCCCTTGACAAATTAAAAAAACATTCTTTGGGGTCCA
CGCAATCGCAATCTGCAGTACCAATTTATGATGCTAACCTCCCCCTCTCC
CCCACCTCGTCCCCTCCTGCACGTCGTATCCTCGCGCTCTAACGCACGCA
CGTTTCGTGAAGCAAGCTGCATCTGGTGGACGCGGAGCTCGAAAAATTTC
GTGGACGAGAAAAGCAGTTGCTGCGCCAGTATCAGATGAGATACGATCCC
CCTGTGCGATTTGACGCCAAGGTAGGCGTGGCTAGCGGTAGCGTCGCTGG
TGGAGGTTCTGCAGGAAGCGGAGGTAGCAACAACATGCAAAAAAGCGTCC
TTGAGCTTGCGCATGAGGAGGAAGCCCGGCGCGTTCAGGAAAACATCGAC
GCCAGCATCAAGCGCATCACCCGGCGCATCGATCGTCGCCGCTCGTGATG
GTAATGATAACGCTCGAGATGATACTGGTGACGGTGGTTCGTGGCAGCGC
TGGCCACAGCCTGTGGTACAGTTCGCGGGAAAATCGGCAGGTGGCACTCT
CTGCTGATTTTTTTCCCGGCAGCAAGGTTTCGCGCAATGTTGTCTTGCCT
TATTTCTCGTGGAATTGAAGCTTGGTTGTCATAAAAACGTTGGGCCTGTT
CGTGGGGTATGTTAGGAAATCAGGGTATGTAAGAGGAACAGTGAAGAATT
GATTGATGGATCACTTTTTTATTGATCCTTTGCTAACTCGAAACCCGTCG
ACGATGGTTCGATTCCCACTTCGCATGAAATTGTTTCTTTCTCCGGAGAA
TGCGCCCTTAATAACATGAAATTGAAACTGGAGGTGCCAATCGTAAGAAC
TTATTGAGTGAATGCTCCTTCCAACCTGGTGAACAATGTCTTAAGAGAGA
CATCCCGCGAAAAAAGTTATGCCTTCAAGACCCTCTCGAAAAGCATTGGG
AAATAAACATTATGGGGAGTAGCGGAGGCCATACTATCTTGAAACGCGTC
AAGATCAGTACTATTAATCGTATGGTTTGAAGGTGGGGGAGTGTTAGGAA
ATCAGGGTATGTAAGAGGAACAATGAAGAATTAATTGGTGATCACTTTTT
GATTCGTTGTTAAGATCCTCTGCTAACCCGAACCCTAACAGTTCGCAGCT
GGTGTTGCGCGAAGATGGGTGGCGAGGGGGCGGGGGGGCTAGATAGTAAA
TGCCTCCGCTATCCTCTCAAGTGGCAGTCATCCCCCCGACGCCCCACCAC
AAAGCAAGAGCATTTATAGCTGCACGATAGATATGCGAACGCGAACGTGA
GCGCTAAACCTTGGTGGTGTTCTTTGCCCTGGATCGGCCGACGCTTCAGG
TACTGCTTAGTTTGTTCGACAAAGTTTCCGTGCTTGTAGCGTTTGCTGTC
ACGACTGACCAAGGGATGAATTTATTCCTCCTGCAGCTATAGTGGAAGCG
CCCGGGCTTCATCGAATGGTGTGGATGGTGCGCCACGACGCGCTTCATAG
TCAGTCTCTTTACATTTCGCCACGTAGGGGTCAGGCGGAATCCTCTGGTA
CTGTCTTGTAGATACGGTTTGTGATGTTGGGTTGATGGCTTTTTTGTGGT
TCCTTGTTCGCGGTTGGGCATGTCGTCCTTCCTTTTTTTCGTTGTACGTA
GTTTCTAACGTCTCGACCAAAAACAAATGGTGGTGGCGTCGAGGGTTTCA
TCAGTAACTTGGCGTCAGTTTTTGTATGGTATCGGCATTACCCAAGAAGG
GCTGGGAAATACTTCATAGTAGGGCTTCGGCTTGACTCAATTCCCCGTAG
TTATATATCCTTTGGGGCGTTGCTGGGTAAGCGAGAACGTCACATAGGTG
GGTGAGGTGACAAACAAAGCTCCCGATCACAACATAAATGTTTTACATAT
GTGTAACGCCCGTGTGAACATTAACACGCGCAGGCACTGATGCTCGATGT
ACAGAGAGCAGGTTTACTCAATGACGTATTATCAATAGCTCACTTAAATG
TGAGGATCGCGTGCAGCACTGTCAAAACCCTGTGATCAATCGAGGAACGC
TATTGATAGTGGATCGACTTCGAATCAACGCGCGGTGTTTACCCACGACA
CGCTAGCGTGCTGTAACTCTAGTTCGGCATCCAATAGTACAAGTAGTAGT
CGTAAGACACTAAATAATACATACTGGTGATAATGTTGCAGCCAGTAGGT
AAAAAAGTTTCAGTATGAGTGCGTACAAACCAGTCCTGTTTTTTTAGGAG
ATAGGTCAGGAATACCGGGAGCCCTGGCTAACGACGAACCTAGTTCAGAC
CGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:977262..981016-

>mRNA_F-serratus_M_contig62.17031.1 ID=mRNA_F-serratus_M_contig62.17031.1|Name=mRNA_F-serratus_M_contig62.17031.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig62:977262..981016- (Fucus serratus male)
ATGGCGGGAGGAAAGGCGGGTGGGGTGGAGCCTTTTGTTGTTCTCGTGGT
GTCGATATTCGCCGCGAGGCTGATCCATTCGCATTTTTATTGCCCCCCCG
AAGACGACCTCAAGATGGCGGGAGGAAAGGCGGGTGGGGTGGAGCCTTTT
GTTGTTCTCGTGGTGTCGATATTCGCCGCGAGGCTGATCCATTCGCATTT
TTATTGCCCCCCCGAAGACGACCTCAAGGTGGATCGAAAGCCCTACGAGG
AGGAGATTCGGGATATCCTGTTCCGCAAAGATCCAAGGTGGATCGAAAGC
CCTACGAGGAGGAGATTCGGGATATCCTGTTCCGCAAAGATCCAAGCAAG
CTGCATCTGGTGGACGCGGAGCTCGAAAAATTTCGTGGACGAGAAAAGCA
GTTGCTGCGCCAGTATCAGATGAGATACGATCCCCCTGTGCGATTTGACG
CCAAGGTAGGCGTGGCTAGCGGTAGCGTCGCTGGTGGAGGTTCTGCAGGA
AGCGGAGGTAGCAACAACATGCAAAAAAGCGTCCTTGAGCTTGCGCATGA
GGAGGAAGCCCGGCGCGTTCAGGAAAACATCGACGCCAGCATCAAGCGCA
TCACCCGGCGCATCGATCGTCGCCGCTCGTGACAAGCTGCATCTGGTGGA
CGCGGAGCTCGAAAAATTTCGTGGACGAGAAAAGCAGTTGCTGCGCCAGT
ATCAGATGAGATACGATCCCCCTGTGCGATTTGACGCCAAGGTAGGCGTG
GCTAGCGGTAGCGTCGCTGGTGGAGGTTCTGCAGGAAGCGGAGGTAGCAA
CAACATGCAAAAAAGCGTCCTTGAGCTTGCGCATGAGGAGGAAGCCCGGC
GCGTTCAGGAAAACATCGACGCCAGCATCAAGCGCATCACCCGGCGCATC
GATCGTCGCCGCTCGTGA
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