mRNA_F-serratus_M_contig62.17027.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17027.1
Unique NamemRNA_F-serratus_M_contig62.17027.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig62.17027.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.110e-25
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 3 
Query:  252 ESDEEQEVLMRKTFCPALHPDLLNVAFKIFDLGNNGTVTKEEMVLGVVGTFKDHRSLALSLQDGEHIA 455
            E  +++EVL+RKTFCPAL P+LL+VAFKIFDL N+GT+TKEEMVLGVVGTFKDHRSLA +LQD EHIA
Sbjct:  878 EKPKQEEVLVRKTFCPALEPELLDVAFKIFDLDNSGTITKEEMVLGVVGTFKDHRSLAHTLQDSEHIA 945
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BLAST of mRNA_F-serratus_M_contig62.17027.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.460e-24
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3 
Query:  252 ESDEEQEVLMRKTFCPALHPDLLNVAFKIFDLGNNGTVTKEEMVLGVVGTFKDHRSLALSLQDGEHIA 455
            E  +++EVL+R TFCPAL P+LL+VAFKIFDL N+GTVTKEEMVLGVVGTFKDHRSLA +LQD EHIA
Sbjct:  830 EKPKQEEVLVRTTFCPALEPELLDVAFKIFDLDNSGTVTKEEMVLGVVGTFKDHRSLAHTLQDSEHIA 897
[Close]
BLAST of mRNA_F-serratus_M_contig62.17027.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.960e-17
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:  240 SSDE-ESDEEQEVLMRKTFCPALHPDLLNVAFKIFDLGNNGTVTKEEMVLGVVGTFKDHRSLALSLQDGEHIA 455
            SSDE +  +E+E+L R+T CP L   +L +AF IFD+ NNG++TK EMVLGVV TFKDHRSLA +L D EHIA
Sbjct:  858 SSDEVDKPQEEELLTRETLCPMLEEQVLEMAFTIFDMDNNGSITKAEMVLGVVDTFKDHRSLAHTLHDSEHIA 930
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDS1_9PHAE3.110e-2577.94EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FX37_ECTSI1.460e-2477.94Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JBC1_9PHAE1.960e-1761.64EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:910371..911317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D7FX37
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons2
Model size456
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.6226275-UTR-F-serratus_M_contig62:910370..9103901622931919.6226275-UTR-F-serratus_M_contig62:910370..910390Fucus serratus maleUTRF-serratus_M_contig62 910371..910390 +
1690964057.8770883-UTR-F-serratus_M_contig62:910370..9103901690964057.8770883-UTR-F-serratus_M_contig62:910370..910390Fucus serratus maleUTRF-serratus_M_contig62 910371..910390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931919.6369915-CDS-F-serratus_M_contig62:910390..9107441622931919.6369915-CDS-F-serratus_M_contig62:910390..910744Fucus serratus maleCDSF-serratus_M_contig62 910391..910744 +
1690964057.8911688-CDS-F-serratus_M_contig62:910390..9107441690964057.8911688-CDS-F-serratus_M_contig62:910390..910744Fucus serratus maleCDSF-serratus_M_contig62 910391..910744 +
1622931919.6520789-CDS-F-serratus_M_contig62:911236..9113171622931919.6520789-CDS-F-serratus_M_contig62:911236..911317Fucus serratus maleCDSF-serratus_M_contig62 911237..911317 +
1690964057.902048-CDS-F-serratus_M_contig62:911236..9113171690964057.902048-CDS-F-serratus_M_contig62:911236..911317Fucus serratus maleCDSF-serratus_M_contig62 911237..911317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17027.1prot_F-serratus_M_contig62.17027.1Fucus serratus malepolypeptideF-serratus_M_contig62 910391..911317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17027.1

>prot_F-serratus_M_contig62.17027.1 ID=prot_F-serratus_M_contig62.17027.1|Name=mRNA_F-serratus_M_contig62.17027.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MGSTGAGKAPDTKIITADAADTETPVDTAEDEKKEPGGVMAAESHRSMGH
KHRATKRLGDDGDSDSSGGREITSSDEESDEEQEVLMRKTFCPALHPDLL
NVAFKIFDLGNNGTVTKEEMVLGVVGTFKDHRSLALSLQDGEHIA
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mRNA from alignment at F-serratus_M_contig62:910371..911317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17027.1 ID=mRNA_F-serratus_M_contig62.17027.1|Name=mRNA_F-serratus_M_contig62.17027.1|organism=Fucus serratus male|type=mRNA|length=947bp|location=Sequence derived from alignment at F-serratus_M_contig62:910371..911317+ (Fucus serratus male)
GCTGGTCCGCCCAGGAGGGGATGGGTTCGACCGGTGCTGGTAAGGCTCCT
GACACGAAAATCATCACTGCTGACGCTGCCGATACAGAAACCCCCGTTGA
CACCGCGGAAGACGAGAAGAAGGAGCCCGGGGGGGTAATGGCGGCCGAGA
GTCATCGTTCCATGGGCCACAAGCACCGCGCGACGAAGAGACTAGGTGAT
GACGGTGACAGTGATTCGTCTGGGGGCAGGGAGATAACGTCGTCAGATGA
GGAAAGCGACGAGGAACAGGAGGTGTTGATGAGGAAGACTTTCTGCCCGG
CGCTGCACCCCGACCTCCTAAACGTTGCGTTCAAGATTTTTGATCTCGGC
AACAACGGCACCGTCACCAAGGAGGTTCGCGCTACTTGCGTACTATTTAC
CGTAACAAGAAGGTATCTGTGGGTCTGTTTAGATCTGGCGCAACTACAGC
GCTGGAATCGGAAGCTGTAGATCTTTCTTGATCGACTAATGGACGACACC
AGCCATGAGTATTGTGTTGTATATATATGTACCTATCACGGGCTTGATGA
ATCGTGGAAGTATAAGTGGTGAAATCCTGGCTTTTGAGTGGGCGGTGCTG
GACGACTTCTACCTGGATATCCACGGAGCAGAATGTTCTCTAAAGTAAGA
TGAGGTTGGTTCAAACACCGGCGGCTGTGACTTACCGTTTGCTATTTGCG
GGAAAGCACTGGGATCGGTCAACGATGGAAAACCAAACGCAGTCTCTCGC
GCACTGTTGCCGTGTATGTGCCACCGTAAGACATTTGTCTCTGTTTGTAT
TTTACACGTTGCGTTCTCCCTCAACTCTTGCCCTTTTTTTTGGGGGGGGG
GCGTTTCGACATGCAGGAGATGGTGCTTGGCGTGGTTGGGACGTTCAAAG
ACCATCGGAGCTTGGCACTGTCTTTGCAGGATGGCGAGCATATCGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:910371..911317+

>mRNA_F-serratus_M_contig62.17027.1 ID=mRNA_F-serratus_M_contig62.17027.1|Name=mRNA_F-serratus_M_contig62.17027.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig62:910371..911317+ (Fucus serratus male)
ATGGGTTCGACCGGTGCTGGTAAGGCTCCTGACACGAAAATCATCACTGC
TGACGCTGCCGATACAGAAACCCCCGTTGACACCGCGGAAGACGAGAAGA
AGGAGCCCGGGGGGGTAATGGCGGCCGAGAGTCATCGTTCCATGGGCCAC
AAGCACCGCGCGACGAAGAGACTAGGTGATGACGGTGACAGTGATTCGTC
TGGGGGCAGGGAGATAACGTCGTCAGATGAGGAAAGCGACGAGGAACAGG
AGGTGTTGATGAGGAAGACTTTCTGCCCGGCGCTGCACCCCGACCTCCTA
AACGTTGCGTTCAAGATTTTTGATCTCGGCAACAACGGCACCGTCACCAA
GGAGATGGGTTCGACCGGTGCTGGTAAGGCTCCTGACACGAAAATCATCA
CTGCTGACGCTGCCGATACAGAAACCCCCGTTGACACCGCGGAAGACGAG
AAGAAGGAGCCCGGGGGGGTAATGGCGGCCGAGAGTCATCGTTCCATGGG
CCACAAGCACCGCGCGACGAAGAGACTAGGTGATGACGGTGACAGTGATT
CGTCTGGGGGCAGGGAGATAACGTCGTCAGATGAGGAAAGCGACGAGGAA
CAGGAGGTGTTGATGAGGAAGACTTTCTGCCCGGCGCTGCACCCCGACCT
CCTAAACGTTGCGTTCAAGATTTTTGATCTCGGCAACAACGGCACCGTCA
CCAAGGAGGAGATGGTGCTTGGCGTGGTTGGGACGTTCAAAGACCATCGG
AGCTTGGCACTGTCTTTGCAGGATGGCGAGCATATCGCGGAGATGGTGCT
TGGCGTGGTTGGGACGTTCAAAGACCATCGGAGCTTGGCACTGTCTTTGC
AGGATGGCGAGCATATCGCG
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