mRNA_F-serratus_M_contig62.17026.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17026.1
Unique NamemRNA_F-serratus_M_contig62.17026.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.150e-9
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 GGHVSGVPPGIGKVVAPEVPPPLKDLNRRANLV------DDKPPEEIADELMIGEIKNVSMKEELILLRKALMIIVLSVTIAVVVRRYIG 252
            GG  +  PP    V  P+ PPPL+ + RR +LV      +D+P E I  ELMIGEI+++ + EE+ L+R+A+++I+LS+  AV+VR + G
Sbjct:  275 GGAGASRPPPQDDVNYPDTPPPLRRMQRRGSLVNREVPQEDEPKEPIEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVRAFAG 364
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BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.150e-9
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   22 PPGIGKVVAPEVPPPLKDLNRRANLVD-DKPPEE-----IADELMIGEIKNVSMKEELILLRKALMIIVLSVTIAVVVRRYIGPM 258
            PP  G V  P+ PPPL+ + RR +LV+ + PPE+     I  ELMIGEI+++ + EE+ L+R+A+++I+LS+  AV+VR + G +
Sbjct:  283 PPPQGDVNYPDTPPPLRRMQRRGSLVNREVPPEDDLKEPIEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVREFAGEL 367
[Close]
BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    4 GHVSG---VPPGIGKVVAPEVPPPLKDLNRRANLV---DDKPPEEIAD-----ELMIGEIKNVSMKEELILLRKALMIIVLSVTIAVVVRRYIGP 255
            GHVSG   +P  +  V  P  PP L     R NLV   D K  EE  D     ELMIGEIK++ + +E++L RKAL++I +S+  A + R + GP
Sbjct:  223 GHVSGRMSLPNALDGVRIPATPPQLNATENRPNLVHVHDTK--EERMDTRSETELMIGEIKSIQITDEIVLARKALVLIFVSLVGATLFREFAGP 315
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FX37_ECTSI1.150e-942.22Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JDS1_9PHAE2.150e-943.53EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FX36_ECTSI1.830e-542.11Small Conductance Mechanosensitive Ion channel n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:902334..902955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.2e-08
Seed eggNOG ortholog2880.D7FX37
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931922.051303-CDS-F-serratus_M_contig62:902333..9024861622931922.051303-CDS-F-serratus_M_contig62:902333..902486Fucus serratus maleCDSF-serratus_M_contig62 902334..902486 +
1690964058.7396681-CDS-F-serratus_M_contig62:902333..9024861690964058.7396681-CDS-F-serratus_M_contig62:902333..902486Fucus serratus maleCDSF-serratus_M_contig62 902334..902486 +
1622931922.0673485-CDS-F-serratus_M_contig62:902847..9029551622931922.0673485-CDS-F-serratus_M_contig62:902847..902955Fucus serratus maleCDSF-serratus_M_contig62 902848..902955 +
1690964058.759428-CDS-F-serratus_M_contig62:902847..9029551690964058.759428-CDS-F-serratus_M_contig62:902847..902955Fucus serratus maleCDSF-serratus_M_contig62 902848..902955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17026.1prot_F-serratus_M_contig62.17026.1Fucus serratus malepolypeptideF-serratus_M_contig62 902334..902955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17026.1

>prot_F-serratus_M_contig62.17026.1 ID=prot_F-serratus_M_contig62.17026.1|Name=mRNA_F-serratus_M_contig62.17026.1|organism=Fucus serratus male|type=polypeptide|length=87bp
GGHVSGVPPGIGKVVAPEVPPPLKDLNRRANLVDDKPPEEIADELMIGEI
KNVSMKEELILLRKALMIIVLSVTIAVVVRRYIGPM*
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mRNA from alignment at F-serratus_M_contig62:902334..902955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17026.1 ID=mRNA_F-serratus_M_contig62.17026.1|Name=mRNA_F-serratus_M_contig62.17026.1|organism=Fucus serratus male|type=mRNA|length=622bp|location=Sequence derived from alignment at F-serratus_M_contig62:902334..902955+ (Fucus serratus male)
GGGGGACACGTGTCTGGGGTCCCGCCGGGAATAGGGAAAGTGGTTGCCCC
GGAGGTGCCGCCGCCGTTGAAGGACCTCAACCGTCGCGCTAACCTGGTGG
ATGATAAGCCGCCGGAGGAGATCGCGGACGAGCTCATGATCGGCGAGATC
AAGGTACTTCAAACGTAAAGGTCATCAAAAATTCTGTCTCGAGTTCAGTG
AATCATTTCTGCTTCATCGCGTTATGAAGGGTCGGCGTTTCGGGTCTTTT
TGTGGTTTGACAACCCGATGAATCCAAAAGAGTAGGCGATCTCTCCCTCT
TTTGTCTTTCCGGGGCTGGCTGTCATCGATGATCGGTGCCGCTATGTTGT
ACTTTATATTGACCTGTGCTGCGCTTTAAACGTACTAAGCCGCTGTGTAC
CATAACCTCGTTTACAGCACGAAGGCCGTGACTCTGCCGCGGTGGTTACT
TCCGAGACTGCAGCTCCTTCCATTCCCTCTCTACCCCTCACCCCACCGCT
CGTTTTCACTTCAGAACGTCTCCATGAAAGAAGAGTTGATACTGCTGAGG
AAGGCGTTGATGATCATCGTTCTCAGCGTCACGATCGCGGTGGTGGTGCG
CCGATATATTGGACCGATGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:902334..902955+

>mRNA_F-serratus_M_contig62.17026.1 ID=mRNA_F-serratus_M_contig62.17026.1|Name=mRNA_F-serratus_M_contig62.17026.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig62:902334..902955+ (Fucus serratus male)
GGGGGACACGTGTCTGGGGTCCCGCCGGGAATAGGGAAAGTGGTTGCCCC
GGAGGTGCCGCCGCCGTTGAAGGACCTCAACCGTCGCGCTAACCTGGTGG
ATGATAAGCCGCCGGAGGAGATCGCGGACGAGCTCATGATCGGCGAGATC
AAGGGGGGACACGTGTCTGGGGTCCCGCCGGGAATAGGGAAAGTGGTTGC
CCCGGAGGTGCCGCCGCCGTTGAAGGACCTCAACCGTCGCGCTAACCTGG
TGGATGATAAGCCGCCGGAGGAGATCGCGGACGAGCTCATGATCGGCGAG
ATCAAGAACGTCTCCATGAAAGAAGAGTTGATACTGCTGAGGAAGGCGTT
GATGATCATCGTTCTCAGCGTCACGATCGCGGTGGTGGTGCGCCGATATA
TTGGACCGATGTGAAACGTCTCCATGAAAGAAGAGTTGATACTGCTGAGG
AAGGCGTTGATGATCATCGTTCTCAGCGTCACGATCGCGGTGGTGGTGCG
CCGATATATTGGACCGATGTGA
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