mRNA_F-serratus_M_contig1511.3539.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1511.3539.1
Unique NamemRNA_F-serratus_M_contig1511.3539.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1511.3539.1 vs. uniprot
Match: D7FSJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ4_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 5.280e-18
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RRNRVDWPIFRPSTVRLMADARARLVAAGGGKEETYVGDHDAEDVXXXXXXXXXXXXXXXXXXFMTEGSRREGIAAYTLHLRR 249
            RRNRVDWP+FRPS +RLMADARARLVAAG  K E YVGD     +                  +MTE SR EGIA YTLHLRR
Sbjct:  415 RRNRVDWPVFRPSMMRLMADARARLVAAGLNKREVYVGDRGVAGLGKN---------------YMTEASRLEGIATYTLHLRR 482
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BLAST of mRNA_F-serratus_M_contig1511.3539.1 vs. uniprot
Match: A0A6H5K4J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.500e-17
Identity = 47/83 (56.63%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RRNRVDWPIFRPSTVRLMADARARLVAAGGGKEETYVGDHDAEDVXXXXXXXXXXXXXXXXXXFMTEGSRREGIAAYTLHLRR 249
            +RNRVDWP+FRPS +RLMADARARLVAAG  K E YVGD     +                  +MTE SR EGIA YTLHLRR
Sbjct:  555 KRNRVDWPVFRPSMMRLMADARARLVAAGLNKTEIYVGDRGVAGLGKN---------------YMTEASRLEGIATYTLHLRR 622
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1511.3539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSJ4_ECTSI5.280e-1857.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4J9_9PHAE2.500e-1756.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1511contigF-serratus_M_contig1511:67683..67932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FSJ4
Hectar predicted targeting categoryother localisation
EggNOG OGs29314@1,2R9XZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.968429-CDS-F-serratus_M_contig1511:67682..679311622929498.968429-CDS-F-serratus_M_contig1511:67682..67931Fucus serratus maleCDSF-serratus_M_contig1511 67683..67931 +
1690962880.075738-CDS-F-serratus_M_contig1511:67682..679311690962880.075738-CDS-F-serratus_M_contig1511:67682..67931Fucus serratus maleCDSF-serratus_M_contig1511 67683..67931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1511.3539.1prot_F-serratus_M_contig1511.3539.1Fucus serratus malepolypeptideF-serratus_M_contig1511 67683..67931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1511.3539.1

>prot_F-serratus_M_contig1511.3539.1 ID=prot_F-serratus_M_contig1511.3539.1|Name=mRNA_F-serratus_M_contig1511.3539.1|organism=Fucus serratus male|type=polypeptide|length=83bp
RRNRVDWPIFRPSTVRLMADARARLVAAGGGKEETYVGDHDAEDVGKKEI
YVGDRDVGGLGKNFMTEGSRREGIAAYTLHLRR
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mRNA from alignment at F-serratus_M_contig1511:67683..67932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1511.3539.1 ID=mRNA_F-serratus_M_contig1511.3539.1|Name=mRNA_F-serratus_M_contig1511.3539.1|organism=Fucus serratus male|type=mRNA|length=250bp|location=Sequence derived from alignment at F-serratus_M_contig1511:67683..67932+ (Fucus serratus male)
AGGCGCAACCGCGTGGACTGGCCCATCTTTCGACCATCCACGGTAAGGCT
GATGGCCGACGCACGGGCTAGGCTGGTGGCGGCCGGCGGGGGCAAGGAAG
AGACCTACGTCGGAGATCACGACGCTGAAGATGTCGGCAAGAAGGAAATC
TACGTCGGAGATCGTGACGTTGGGGGCTTGGGCAAGAACTTCATGACGGA
GGGCTCGAGGCGCGAGGGCATCGCAGCGTACACGTTACACCTCCGGAGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1511:67683..67932+

>mRNA_F-serratus_M_contig1511.3539.1 ID=mRNA_F-serratus_M_contig1511.3539.1|Name=mRNA_F-serratus_M_contig1511.3539.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig1511:67683..67932+ (Fucus serratus male)
AGGCGCAACCGCGTGGACTGGCCCATCTTTCGACCATCCACGGTAAGGCT
GATGGCCGACGCACGGGCTAGGCTGGTGGCGGCCGGCGGGGGCAAGGAAG
AGACCTACGTCGGAGATCACGACGCTGAAGATGTCGGCAAGAAGGAAATC
TACGTCGGAGATCGTGACGTTGGGGGCTTGGGCAAGAACTTCATGACGGA
GGGCTCGAGGCGCGAGGGCATCGCAGCGTACACGTTACACCTCCGGAGGA
GGCGCAACCGCGTGGACTGGCCCATCTTTCGACCATCCACGGTAAGGCTG
ATGGCCGACGCACGGGCTAGGCTGGTGGCGGCCGGCGGGGGCAAGGAAGA
GACCTACGTCGGAGATCACGACGCTGAAGATGTCGGCAAGAAGGAAATCT
ACGTCGGAGATCGTGACGTTGGGGGCTTGGGCAAGAACTTCATGACGGAG
GGCTCGAGGCGCGAGGGCATCGCAGCGTACACGTTACACCTCCGGAGG
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