mRNA_F-serratus_M_contig1510.3538.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1510.3538.1
Unique NamemRNA_F-serratus_M_contig1510.3538.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1510.3538.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.590e-25
Identity = 123/345 (35.65%), Postives = 162/345 (46.96%), Query Frame = 2 
Query:    2 LNPDLLSSQERGRLSCLVEVLLSCGMTFAPRSAGGGWMEGGGRAVPGAV-AQAFVLEPAIDQLLKYEGYDFAHPMLVAPLRPIVAHEVSLAAMRQAEASKAWHGDQGNKDRPPNGKPQLLAPL------HPDSDR--QPASADLAIERDAADTNIHGKEGSRGGEKASRLASGTEVKGETEKKAGGIPP----TQTPQAASPDRRRAHFVVPFWKRTN--RSRVDG------------AKKENTALE-----GSSGAASAKGGLAGVAYRAGAMPGAPGEGDGGLKSN-SKRPRADG---------KVGGNNSNERPNKTSAVRYQFRAGYTNAVRRPVRMRDLM 910
            LNPDLLS QER R   LV +LLSCG+TF+P+SA          A   A  AQ F LEPAIDQLLKYEGY+FAHP L  PLRP+VAHEV+L  MR+AEA+K  H +     +     P   A        HP + +  + + A  A  +  ++ + +G+                                     T    S + R AH  VPFW RTN    R DG            A K++ A++      S   +S        A +AG++  +  +G     +  SKR R +G         +  G+   + P     +RYQFRAGYTNAVRRPVRMRDL+
Sbjct:  739 LNPDLLSPQERARFRELVGILLSCGLTFSPQSASSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYEFAHPRLAPPLRPMVAHEVALEGMRKAEAAKLSHREDAAFAKNEASDPFAAASSATRGTGHPFTTKAGKSSGAQAASGKSTSEADENGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTKFRDSENDRPAH-PVPFWNRTNWISGRKDGTGSRRDAGDDAAAVKQSAAIDFTHDTKSPSKSSVNKLCETPAVQAGSISCSATDGHQATAAERSKRVRHEGVARRGTVEDEEAGSGKGKIP-----IRYQFRAGYTNAVRRPVRMRDLL 1077
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1510.3538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K262_9PHAE3.590e-2535.65AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1510contigF-serratus_M_contig1510:172090..174501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog2880.D7FQ00
Preferred nameCHTF18
KEGG koko:K11269
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0007140,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035753,GO:0035825,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045005,GO:0045935,GO:0046483,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051704,GO:0051716,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0098813,GO:0140013,GO:0140014,GO:1900262,GO:1900264,GO:1901360,GO:1901576,GO:1903046,GO:1903047,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.ATP binding
EggNOG OGsKOG1969@1,KOG1969@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size1607
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1510.3538.1prot_F-serratus_M_contig1510.3538.1Fucus serratus malepolypeptideF-serratus_M_contig1510 172166..173807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.7613673-UTR-F-serratus_M_contig1510:172089..1721651622929498.7613673-UTR-F-serratus_M_contig1510:172089..172165Fucus serratus maleUTRF-serratus_M_contig1510 172090..172165 +
1690962879.9633687-UTR-F-serratus_M_contig1510:172089..1721651690962879.9633687-UTR-F-serratus_M_contig1510:172089..172165Fucus serratus maleUTRF-serratus_M_contig1510 172090..172165 +
1622929498.8236659-UTR-F-serratus_M_contig1510:173807..1745011622929498.8236659-UTR-F-serratus_M_contig1510:173807..174501Fucus serratus maleUTRF-serratus_M_contig1510 173808..174501 +
1690962880.009828-UTR-F-serratus_M_contig1510:173807..1745011690962880.009828-UTR-F-serratus_M_contig1510:173807..174501Fucus serratus maleUTRF-serratus_M_contig1510 173808..174501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.775417-CDS-F-serratus_M_contig1510:172165..1722731622929498.775417-CDS-F-serratus_M_contig1510:172165..172273Fucus serratus maleCDSF-serratus_M_contig1510 172166..172273 +
1690962879.9763486-CDS-F-serratus_M_contig1510:172165..1722731690962879.9763486-CDS-F-serratus_M_contig1510:172165..172273Fucus serratus maleCDSF-serratus_M_contig1510 172166..172273 +
1622929498.790158-CDS-F-serratus_M_contig1510:172798..1729031622929498.790158-CDS-F-serratus_M_contig1510:172798..172903Fucus serratus maleCDSF-serratus_M_contig1510 172799..172903 +
1690962879.986245-CDS-F-serratus_M_contig1510:172798..1729031690962879.986245-CDS-F-serratus_M_contig1510:172798..172903Fucus serratus maleCDSF-serratus_M_contig1510 172799..172903 +
1622929498.8071437-CDS-F-serratus_M_contig1510:173183..1738071622929498.8071437-CDS-F-serratus_M_contig1510:173183..173807Fucus serratus maleCDSF-serratus_M_contig1510 173184..173807 +
1690962879.9960237-CDS-F-serratus_M_contig1510:173183..1738071690962879.9960237-CDS-F-serratus_M_contig1510:173183..173807Fucus serratus maleCDSF-serratus_M_contig1510 173184..173807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1510.3538.1

>prot_F-serratus_M_contig1510.3538.1 ID=prot_F-serratus_M_contig1510.3538.1|Name=mRNA_F-serratus_M_contig1510.3538.1|organism=Fucus serratus male|type=polypeptide|length=279bp
MTFAPRSAGGGWMEGGGRAVPGAVAQAFVLEPAIDQLLKYEGYDFAHPML
VAPLRPIVAHEVSLAAMRQAEASKAWHGDQGNKDRPPNGKPQLLAPLHPD
SDRQPASADLAIERDAADTNIHGKEGSRGGEKASRLASGTEVKGETEKKA
GGIPPTQTPQAASPDRRRAHFVVPFWKRTNRSRVDGAKKENTALEGSSGA
ASAKGGLAGVAYRAGAMPGAPGEGDGGLKSNSKRPRADGKVGGNNSNERP
NKTSAVRYQFRAGYTNAVRRPVRMRDLM*
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mRNA from alignment at F-serratus_M_contig1510:172090..174501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1510.3538.1 ID=mRNA_F-serratus_M_contig1510.3538.1|Name=mRNA_F-serratus_M_contig1510.3538.1|organism=Fucus serratus male|type=mRNA|length=2412bp|location=Sequence derived from alignment at F-serratus_M_contig1510:172090..174501+ (Fucus serratus male)
GCTCAATCCGGACCTCCTGAGTTCTCAGGAAAGGGGGCGCCTGAGCTGTC
TGGTAGAGGTTCTACTGTCGTGCGGGATGACGTTTGCGCCGCGATCAGCC
GGCGGCGGCTGGATGGAAGGAGGAGGGAGAGCAGTCCCAGGCGCGGTCGC
CCAAGCATTTGTGCTCGAGCCTGCCATAGATCAGGTGCGCATGCACAAAG
GGAAGGAAGTTTCCCATCGTCGAGAGAAGGCCGCACGGAAGTATTGGAAT
GTAGCGTGCAGGCAAGAGTCAAGTGTCAAGGAGTCGTCGAAGGTCCCACC
CTGAATACCGAAGCTGGAGTAAACTTAACCCTTACTCCGGAGTGTCTGTG
ACGTAACTCGATGTAGCCCCTGGCGGAAAGAGACATATTTCGCTCGGGTG
GCTGTCTAGCGTCGAGGGAGATCATTGACGAAACTGCGTTTCGTTCCCGG
TCGGCGAGTGAAAGAGCTGCAATGATTCCCTTCGAACGGTTGAGAAGTAG
AAATTGATAAAATGAAGGGTTTAGGAGGACGTCAAGGATCTGCGACTACG
TAGCCGTGGGTCAAGCGTCAGCGAAAAATATGAATATTACTCAACAGGAC
TGCGCTTTACCTGCTCTGGAACCCCACGGTCGGGTCGCTGTATTTGTCTA
GAGCTACTGCTCCTACATCCTGTACAAACACGCGCGGCGACCTCTTGTTG
GATTGACAGCTTCTCAAGTACGAAGGCTACGACTTCGCGCACCCGATGCT
GGTCGCCCCTCTCCGCCCGATCGTGGCTCACGAGGTCAGCCTGGCGGCCA
TGCGTCAGGCGGAGGTGAGAGAACGTGGCATAGTAAGCAAGCGATTATCG
AAGATGCTGCCGTCGGACTATTTTTTTGGGGGGGGGGGTGGGGGGGGTTC
ATTTTTATTTTCTTCATTCGATATCAAAGACTCTGCGCGCGATTTGTCAA
CCCCGGACCGACCGTGCACTGATTTTACTTGATGAACCCGAGCGCGCTCT
TCAAGTACTCGTGGAACCCCTCTCTCTACCCCTTCCATCATATACACCGA
TGGTTTTCTACCTTCCACCTCCTCCGACTATTAATATAAAAAAGGCTTCT
AAGGCCTGGCACGGCGACCAAGGCAACAAGGACCGGCCACCAAACGGAAA
GCCACAGCTTCTTGCTCCTCTCCATCCGGACTCCGATAGACAGCCCGCCA
GCGCTGATCTCGCCATTGAACGAGACGCGGCGGATACAAACATCCACGGG
AAAGAGGGATCCAGAGGAGGCGAAAAAGCCTCTAGACTGGCGTCGGGGAC
AGAAGTAAAAGGAGAAACAGAAAAAAAGGCAGGAGGAATCCCACCTACAC
AGACACCCCAGGCAGCGTCGCCTGACCGACGCCGAGCGCACTTTGTAGTG
CCATTCTGGAAGCGCACGAACCGGAGCAGGGTCGACGGCGCGAAAAAGGA
AAACACGGCACTTGAGGGTAGCAGCGGGGCCGCCTCGGCGAAGGGCGGCC
TTGCAGGGGTGGCGTACCGAGCGGGCGCAATGCCGGGTGCTCCTGGCGAA
GGAGATGGCGGGTTGAAGAGCAATTCAAAGCGCCCCCGAGCGGACGGTAA
GGTTGGAGGCAACAACAGCAACGAAAGGCCGAACAAGACCTCGGCGGTTC
GGTATCAGTTCAGGGCGGGGTATACCAACGCCGTTCGTCGGCCCGTTCGC
ATGAGGGACCTAATGTAGGTTAAATGGAGGAGGCGGGGAGGGAAAAGTGG
TACTGGTACCTCGAAGCATGAGACGAGGTGCGGTCTTTTTTGTATCATAT
ACCTTGTGCCCAACGCGGTATCGACCTCTCGAGGTTTTGTTACTCGGCGA
GGACAAAAAATATCATTGGTGTTCCATATTCCTGCTCCAAGTTGTCAGGG
ATTGTTGCAAACCTCTTTTCTGACCCGATGTTCCCGACTCGCCGAGTGTT
TGTGCGTATAAATTCGAAGCTTGTTTCGTTTAGTTTCGCTTTGGCAGTAT
ACGGATGGTCGACCCGCTATGGTAGCGGTACCGGTGTACCTGTTACCGTT
TATCGCTGCCGAGGATTGCGTCGTCGGGCCTCGAAAGGGGCGAGCGAGAT
ACTACTGTTTTGCCGAATACGTTGTCGTGTCGGGGACGAGTAAGCCCTGA
TCCTCGGACTGGGAAAAGGCCAGTGCATCAGCAACATATTCCCGCCCTCG
AATGCCGCGTGGTTCGTACCCCCTGATTCTTGCATGAGCGACGTATAGCT
CGTTAAAATGAAGAAATAGCCTTTTTAGCATCGTCCACGCCAACGCCATT
GCTGGAGATTCCATCTATCGTGGTACTTGTCTTGCCGCAGAATCATATTC
GTACAGAGTAGCAGTAAAAACGCTGGTGCGGCTTGACGTGGGTGGACATG
TGATGTATCCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1510:172090..174501+

>mRNA_F-serratus_M_contig1510.3538.1 ID=mRNA_F-serratus_M_contig1510.3538.1|Name=mRNA_F-serratus_M_contig1510.3538.1|organism=Fucus serratus male|type=CDS|length=1674bp|location=Sequence derived from alignment at F-serratus_M_contig1510:172090..174501+ (Fucus serratus male)
ATGACGTTTGCGCCGCGATCAGCCGGCGGCGGCTGGATGGAAGGAGGAGG
GAGAGCAGTCCCAGGCGCGGTCGCCCAAGCATTTGTGCTCGAGCCTGCCA
TAGATCAGATGACGTTTGCGCCGCGATCAGCCGGCGGCGGCTGGATGGAA
GGAGGAGGGAGAGCAGTCCCAGGCGCGGTCGCCCAAGCATTTGTGCTCGA
GCCTGCCATAGATCAGCTTCTCAAGTACGAAGGCTACGACTTCGCGCACC
CGATGCTGGTCGCCCCTCTCCGCCCGATCGTGGCTCACGAGGTCAGCCTG
GCGGCCATGCGTCAGGCGGAGCTTCTCAAGTACGAAGGCTACGACTTCGC
GCACCCGATGCTGGTCGCCCCTCTCCGCCCGATCGTGGCTCACGAGGTCA
GCCTGGCGGCCATGCGTCAGGCGGAGGCTTCTAAGGCCTGGCACGGCGAC
CAAGGCAACAAGGACCGGCCACCAAACGGAAAGCCACAGCTTCTTGCTCC
TCTCCATCCGGACTCCGATAGACAGCCCGCCAGCGCTGATCTCGCCATTG
AACGAGACGCGGCGGATACAAACATCCACGGGAAAGAGGGATCCAGAGGA
GGCGAAAAAGCCTCTAGACTGGCGTCGGGGACAGAAGTAAAAGGAGAAAC
AGAAAAAAAGGCAGGAGGAATCCCACCTACACAGACACCCCAGGCAGCGT
CGCCTGACCGACGCCGAGCGCACTTTGTAGTGCCATTCTGGAAGCGCACG
AACCGGAGCAGGGTCGACGGCGCGAAAAAGGAAAACACGGCACTTGAGGG
TAGCAGCGGGGCCGCCTCGGCGAAGGGCGGCCTTGCAGGGGTGGCGTACC
GAGCGGGCGCAATGCCGGGTGCTCCTGGCGAAGGAGATGGCGGGTTGAAG
AGCAATTCAAAGCGCCCCCGAGCGGACGGTAAGGTTGGAGGCAACAACAG
CAACGAAAGGCCGAACAAGACCTCGGCGGTTCGGTATCAGTTCAGGGCGG
GGTATACCAACGCCGTTCGTCGGCCCGTTCGCATGAGGGACCTAATGTAG
GCTTCTAAGGCCTGGCACGGCGACCAAGGCAACAAGGACCGGCCACCAAA
CGGAAAGCCACAGCTTCTTGCTCCTCTCCATCCGGACTCCGATAGACAGC
CCGCCAGCGCTGATCTCGCCATTGAACGAGACGCGGCGGATACAAACATC
CACGGGAAAGAGGGATCCAGAGGAGGCGAAAAAGCCTCTAGACTGGCGTC
GGGGACAGAAGTAAAAGGAGAAACAGAAAAAAAGGCAGGAGGAATCCCAC
CTACACAGACACCCCAGGCAGCGTCGCCTGACCGACGCCGAGCGCACTTT
GTAGTGCCATTCTGGAAGCGCACGAACCGGAGCAGGGTCGACGGCGCGAA
AAAGGAAAACACGGCACTTGAGGGTAGCAGCGGGGCCGCCTCGGCGAAGG
GCGGCCTTGCAGGGGTGGCGTACCGAGCGGGCGCAATGCCGGGTGCTCCT
GGCGAAGGAGATGGCGGGTTGAAGAGCAATTCAAAGCGCCCCCGAGCGGA
CGGTAAGGTTGGAGGCAACAACAGCAACGAAAGGCCGAACAAGACCTCGG
CGGTTCGGTATCAGTTCAGGGCGGGGTATACCAACGCCGTTCGTCGGCCC
GTTCGCATGAGGGACCTAATGTAG
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