mRNA_F-serratus_M_contig1510.3537.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE) HSP 1 Score: 239 bits (611), Expect = 8.770e-71 Identity = 113/148 (76.35%), Postives = 131/148 (88.51%), Query Frame = 3
Query: 21 VMNRSEPDLLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTATARTAESVALDMLSHLMDILAPTLRP 464
+ +R + D+ EEV+ FNDH KV+AGVHENFLGVRFNDPTLSKA+AA+DWL MADLMD RTN++QDYSF RY P+AAAGVH+LCRSDQR+ V+QPKKDYEARTAR+AK NILHSF DGRQL AT RT +++ LDMLSHLMDILAPTLRP
Sbjct: 591 MADRKDADVFEEVQAFNDHSKVLAGVHENFLGVRFNDPTLSKAAAAMDWLEMADLMDTRTNQTQDYSFSRYAPVAAAGVHFLCRSDQRSTVTQPKKDYEARTARAAKSNILHSFADGRQLGATGRTTQALVLDMLSHLMDILAPTLRP 738
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: A0A4D9CU49_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU49_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 5.100e-21 Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 3
Query: 30 RSEPDLLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTAT-ARTAESVALDMLSHLMDILAPTLRP 464
R ++ V ++DH V+ EN+ +RF DP L+K A +WLA +DL+ R +L AAA +H LCR + R ++ P+KD+E R+AR ++++IL SF +G L A AR V LD++S LM IL P LRP
Sbjct: 734 RDTDRVMASVASYSDHAHVLLAAQENYCQLRFTDPNLTKVLHAAEWLAFSDLVQGRQMEGHHVMEDLHLATAAA-LHLLCRVETRPRLALPRKDHEYRSARLSRQHILQSFGEGCSLQAMWARRPTPVVLDVVSPLMHILNPNLRP 878
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: W7TIW5_9STRA (Chromosome transmission fidelity n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIW5_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 6.590e-21 Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 3
Query: 30 RSEPDLLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTAT-ARTAESVALDMLSHLMDILAPTLRP 464
R ++ V ++DH V+ EN+ +RF DP+L+K A +WLA +DL+ R +L AAA +H LCR + R ++ P+KD+E R+AR ++++IL SF +G L A AR V LD++S LM IL P+LRP
Sbjct: 333 RDTDRVMTSVASYSDHAHVLLAAQENYCQLRFTDPSLTKVLHAAEWLAFSDLVHGRQMEGLHVMEDLHLATAAA-LHLLCRVETRPRLALPRKDHEYRSARLSRQHILQSFGEGCSLQALWARRPTPVVLDVVSPLMHILNPSLRP 477
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: A0A8C6RTR0_NANGA (Chromosome transmission fidelity factor 18 n=2 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6RTR0_NANGA) HSP 1 Score: 93.6 bits (231), Expect = 2.810e-19 Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 3
Query: 45 LLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTATAR-TAESVALDMLSHLMDILAPTLRP 464
+L +H KVV G+ +NFL +R D +L A+DWLA DL++ +RSQ + RYLP A H L S + P EA+T + RN + + V G T ++ T +++ LD L L+D+LAP LRP
Sbjct: 629 ILHVTTSAGEHEKVVQGLFDNFLRLRLRDSSLGTVCCALDWLAFDDLLEQAAHRSQSFQLLRYLPFLPAAFHVLFASSHVPRILFPSSQQEAQTRMNQTRNQIQTLVSGMAPTTRSQATPQTLVLDTLCLLLDVLAPKLRP 769
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: A0A4X2LD57_VOMUR (Chromosome transmission fidelity factor 18 n=5 Tax=Metatheria TaxID=9263 RepID=A0A4X2LD57_VOMUR) HSP 1 Score: 93.2 bits (230), Expect = 3.850e-19 Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 3
Query: 45 LLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTATARTA-ESVALDMLSHLMDILAPTLRP 464
+L DH KV G+++NFL ++ DPTL+ A+DWL D++D Q++ RYLP H L ++ +S P +EA + +N++ S V G A +R A +S+ L+ L L+DI++P LRP
Sbjct: 678 ILHITTSTGDHEKVAQGLYDNFLNMKLKDPTLNSVCTAMDWLIFEDILDQTVRHGQNFQLMRYLPFLPVAFHLLFAANSVPRISYPNSQHEALNKMNQTQNLIMSLVSGVTPAARSRAAPQSLVLEALCLLLDIISPKLRP 818
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: G3WKJ1_SARHA (Chromosome transmission fidelity factor 18 n=3 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3WKJ1_SARHA) HSP 1 Score: 92.8 bits (229), Expect = 5.240e-19 Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 3
Query: 45 LLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTATARTA-ESVALDMLSHLMDILAPTLRP 464
+L DH KV G+++NFL ++ DPTL+ AA+DWL D++D Q++ RYLP H L ++ +S P +EA + +N++ S V G A +R +S+ L+ L L+DI++P LRP
Sbjct: 677 ILHITTSTGDHEKVAQGLYDNFLNMKLKDPTLNSVCAAMDWLIFEDILDQTVRHGQNFQLMRYLPFLPVAFHLLFAANSIPRISYPNSQHEALNKMNQTQNLIMSLVSGVTPAARSRAGPQSLILEALCLLLDIISPKLRP 817
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: H0VG48_CAVPO (Chromosome transmission fidelity factor 18 n=4 Tax=Cavia porcellus TaxID=10141 RepID=H0VG48_CAVPO) HSP 1 Score: 91.7 bits (226), Expect = 1.320e-18 Identity = 49/141 (34.75%), Postives = 74/141 (52.48%), Query Frame = 3
Query: 45 LLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDG-RQLTATARTAESVALDMLSHLMDILAPTLRP 464
+L+ +H KVV G+ +NFL +R D +L A+DWLA DL++ + Q + RYLP A H L S ++ P EA+ S RN++ + V G +T + T +++ LD L L+DILAP +RP
Sbjct: 649 ILQVTTSAGEHEKVVQGLFDNFLRLRLRDSSLGSVCMALDWLAFDDLVERAAHHGQSFQLLRYLPFLPAAFHMLFASSHVPRIAFPSSQQEAQNRISQMRNLIQTLVSGITPVTRSRATPQTLILDTLCLLLDILAPKMRP 789
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: F6XJ59_MONDO (Chromosome transmission fidelity factor 18 n=6 Tax=Didelphinae TaxID=126287 RepID=F6XJ59_MONDO) HSP 1 Score: 88.2 bits (217), Expect = 2.100e-17 Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 3
Query: 45 LLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTATARTA-ESVALDMLSHLMDILAPTLRP 464
+L DH KV G+++NFL ++ D TL+ A+DWL D++D Q++ RY P H L ++ +S P +EA + +N++ S V G A +R A +S+ L+ L L+DI++P LRP
Sbjct: 504 ILHITTSTGDHEKVAQGLYDNFLNMKLKDSTLNSVCTAMDWLIFEDILDQAVRHGQNFQLMRYFPFLPVAFHLLFAANSVPRISYPNSQHEALNKTNQTQNLIMSLVSGVTPAARSRAAPQSLILEALCLLLDIISPKLRP 644
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: UPI001EAEB601 (chromosome transmission fidelity protein 18 homolog n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAEB601) HSP 1 Score: 85.9 bits (211), Expect = 2.680e-17 Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query: 45 LLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTATARTAE-SVALDMLSHLMDILAPTLRP 464
+L +H K+ G+++NFL +R D L + A+DWL +D + + Q++S RY P A H+L ++ P YEA T SA RN L + + R +E S++LD+LS L+DI+ P LRP
Sbjct: 50 ILHLASSTGEHDKLTQGLYDNFLSMRVKDHDLGRVCQALDWLGFSDGLTQAMLQGQNFSLLRYQPFLPAAFHFLFAHTHVPRINYPHSQYEALTKTSASRNALAAMLSEVPACIRTRVSELSLSLDILSLLLDIICPKLRP 190
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Match: A0A2K6EZA4_PROCO (Chromosome transmission fidelity factor 18 n=8 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6EZA4_PROCO) HSP 1 Score: 87.8 bits (216), Expect = 2.920e-17 Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 3
Query: 45 LLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAMADLMDARTNRSQDYSFCRYLPLAAAGVHYLCRSDQRAVVSQPKKDYEARTARSAKRNILHSFVDGRQLTATARTA-ESVALDMLSHLMDILAPTLRP 464
+L +H KVV G+ +NFL +R D +L +A+DWLA DL+ + Q + RYLP H L +S P EA+ S RN++ + V G ++ A +S+ LD L L+DILAP LRP
Sbjct: 659 VLHVATSAGEHEKVVQGLFDNFLRLRLRDSSLGAVCSALDWLAFDDLLGQAAHHGQSFQLLRYLPFLPVAFHVLFARSHVPRISFPSSQQEAQNRISQTRNLIQTLVSGMAPATRSQAAPQSLVLDALCLLLDILAPKLRP 799 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1510.3537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1510.3537.1 >prot_F-serratus_M_contig1510.3537.1 ID=prot_F-serratus_M_contig1510.3537.1|Name=mRNA_F-serratus_M_contig1510.3537.1|organism=Fucus serratus male|type=polypeptide|length=147bp MNRSEPDLLEEVEGFNDHGKVVAGVHENFLGVRFNDPTLSKASAAVDWLAback to top mRNA from alignment at F-serratus_M_contig1510:170189..171620+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1510.3537.1 ID=mRNA_F-serratus_M_contig1510.3537.1|Name=mRNA_F-serratus_M_contig1510.3537.1|organism=Fucus serratus male|type=mRNA|length=1432bp|location=Sequence derived from alignment at F-serratus_M_contig1510:170189..171620+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1510:170189..171620+ >mRNA_F-serratus_M_contig1510.3537.1 ID=mRNA_F-serratus_M_contig1510.3537.1|Name=mRNA_F-serratus_M_contig1510.3537.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig1510:170189..171620+ (Fucus serratus male)back to top |