mRNA_F-serratus_M_contig1505.3520.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 113 bits (282), Expect = 5.940e-25 Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 2
Query: 248 PLQRVSVQPVQMSQECDFDGIPALVDTATDTISG---IAFQAGGGCRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESNFRYTEPDMQVIYRRSLVPEEDA 697
P+++V ++P + ECDF+G P TD SG I C L F GL+ Q L+++ TA+F + V V PIQ G RAYA +FYPSMQEIWPE+Y+ +IR V+VD+ VE+RS ++Y P ++V Y R+ P + A
Sbjct: 371 PMEKVVIEPSR--NECDFEGRPT---PPTDPKSGEPPIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAPPADAA 518
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 5.400e-18 Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 2
Query: 287 QECDFDGIPALVDTATDTISGIAFQAGG--GCRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRS-TESNFRYTEPDMQVIYRRSLVPEED 694
+ECD +G P + ++++ I + + F GL++ L+ + TA F ++ V PI+ GP RAY+ +FYP MQEIWPE+Y +IR V+VD+ +E+ S T FR+ P ++V YRR++ P +D
Sbjct: 114 KECDLEGRP--ITRIGNSLTPITASSPDVRESHIEFTGLEKTGHDLRGLRVTAIFGVDAVHQIACVTSPIEVGPDGRAYSRVFYPGMQEIWPELYNTSNIRLVEVDVAIEILSDTCGEFRFVGPHLKVAYRRAIPPVDD 250
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: D8LCL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.110e-16 Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 2
Query: 287 QECDFDGIPALVDTATDTISGIAF---QAGGGCRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESNFRYTEPDMQVIYRR 673
++ DF+G + +D+ AF ++ L F GL +PL + A A F A GR + GP+Q G R Y + YPSM E+WPEVY +IR VKVDM VEVRS + Y +++ +YRR
Sbjct: 207 EDFDFEGRTIEPNKPSDSPFAAAFSVPRSDDEQHLVFIGLGETGRPLPTLAARAQFSANPGRKAERMVGPLQAGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLYLATELKAMYRR 338
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: D7G6J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 5.140e-16 Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 2
Query: 284 SQECDFDGIPALVDTATDTISGIA--FQAGG-GCRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESNFRYTEPDMQVIYRRS 676
SQ CDF G + S +A F +G L F GL L + T YF +GR ++ AGP+Q G R Y + YP+M E+WPE+Y ++ V+VD+++ VRS RY +++V YRR+
Sbjct: 3 SQVCDFHGRAVAHPQESVVPSALAACFMSGSLEQHLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRT 136
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: A0A6H5JZ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 5.150e-14 Identity = 44/100 (44.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query: 380 LSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQ--GPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESNFRYTEPDMQVIYRR 673
L F GL +PL + A A F A GR + GP+Q G R Y + YPSM E+WPEVY +IR VKVDM VEVRS + Y ++ +YRR
Sbjct: 323 LVFIGLGETGRPLPALAARAQFSANPGRQAERMVGPLQARAGSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLYLATELMAMYRR 422
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 5.390e-14 Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = 2
Query: 287 QECDFDGIPALVDTATDTISGIAFQAGGGCRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESN-FRYTEPDMQV 661
+ECDF+G P + T S G + F GL+ + + T F ++ V PIQ RAY+ +FYPS++E+WPE+Y +R V+VD+ VEV S + FRY P ++V
Sbjct: 54 KECDFEGRPLPGGGSGMTPSSTVSSNGRDTHVVFTGLNDTGHDPRGLRVTVIFGVDAVHQIACVTSPIQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: A0A6H5K0L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.680e-13 Identity = 47/143 (32.87%), Postives = 80/143 (55.94%), Query Frame = 2
Query: 281 MSQECDFDG-----IPALVDTATDTISGIAFQAGGG--CRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNR----AYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESNFRYTEPDMQVIYRRS 676
+ QECDFDG +PA T+ +G+ + CRL F G++ + ++++ TA F G + A + N + T+ YPSM++IWPEVY+ S++ V+VDM V+VRS++ + ++ P ++V+YRR+
Sbjct: 433 LRQECDFDGRSAAAVPAASATSASA-NGVCASSSTKKPCRLRFKGIEGVDYGIRDLAVTAQFSVGPPGNLVGTAPTNLEADRNACAGSSSCTITYPSMEDIWPEVYSARSVKVVEVDMTVDVRSSDGKWVHSWPSVKVMYRRA 574
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.690e-13 Identity = 43/134 (32.09%), Postives = 66/134 (49.25%), Query Frame = 2
Query: 287 QECDFDGIPALVDTATDTISGIAFQAGGGCRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESN-FRYTEPDMQVIYRRSLVP 685
+ECDF+G P + T S G + F GL + + T F ++ V P+Q RAY+ +FYPS++++WPE+Y +R V+VD+ VE+ S + FRY P ++V Y R P
Sbjct: 232 KECDFEGRPLPGGGSGMTPSSTVSSNGRDTHVVFTGLHNTGHDPRGLRVTVIFGVDAVHQIACVTSPVQVAADGRAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGYTRITPP 365
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: D8LCK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.510e-8 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 497 GPMNRAYATLFYPSMQEIWPEVYALPSIRTVKVDMWVEVRSTESNFRYTEPDMQVIYRRS 676
G R A + +PS+ EIWPEVY + +IR ++VDM VEVRS++ N YT P +++ YRRS
Sbjct: 565 GRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRS 624
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Match: A0A6H5JMY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY9_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 1.910e-8 Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 2
Query: 287 QECDFDGIP-ALVDTATDTISGIAFQAGGGCRLSFAGLDRLRQPLQNIEATAYFRAGTGRAVSSVAGPIQQGPMNRAYATLFYPSMQEIWPEVYALPSIRTVK 592
+ECD +G P A + + I+ + + F GL++ L+ + TA F ++ V PI+ GP RA + +FYP MQEIWPE+Y +IR V+
Sbjct: 118 KECDLEGRPIARIGNSLTPITASSTDVRESL-IEFTGLEKTGHDLRGLCVTAIFGVDAVHQIACVTSPIEVGPSGRACSRVFYPGMQEIWPELYNTSNIRLVE 219 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1505.3520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1505.3520.1 >prot_F-serratus_M_contig1505.3520.1 ID=prot_F-serratus_M_contig1505.3520.1|Name=mRNA_F-serratus_M_contig1505.3520.1|organism=Fucus serratus male|type=polypeptide|length=204bp MLQTAAMDKSVSSTDFDPAFNAGRYDRIGASAVRLEDGLARIDLSSALQSback to top mRNA from alignment at F-serratus_M_contig1505:180656..182523- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1505.3520.1 ID=mRNA_F-serratus_M_contig1505.3520.1|Name=mRNA_F-serratus_M_contig1505.3520.1|organism=Fucus serratus male|type=mRNA|length=1868bp|location=Sequence derived from alignment at F-serratus_M_contig1505:180656..182523- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1505:180656..182523- >mRNA_F-serratus_M_contig1505.3520.1 ID=mRNA_F-serratus_M_contig1505.3520.1|Name=mRNA_F-serratus_M_contig1505.3520.1|organism=Fucus serratus male|type=CDS|length=1224bp|location=Sequence derived from alignment at F-serratus_M_contig1505:180656..182523- (Fucus serratus male)back to top |