mRNA_F-serratus_M_contig1505.3519.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1505.3519.1
Unique NamemRNA_F-serratus_M_contig1505.3519.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 187 bits (475), Expect = 4.210e-52
Identity = 89/153 (58.17%), Postives = 117/153 (76.47%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKILKE 459
            ANLSA+G K RP+A GD+ RR++G V CR+YG  LA++F+P GQYGVAV GG E++A  A L  ++G  +L+YD  NAFNS+ R   LPALA+++P ++PYA+N+YAREPPKLL+  D  G  V+ S  GVQQGCNLGPLCY SAG LK+L++
Sbjct: 1222 ANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTD-SGMAVIPSATGVQQGCNLGPLCY-SAGLLKLLRD 1372          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 3.270e-42
Identity = 82/153 (53.59%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKILKE 459
            ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +   G L I+KE
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGF-CVGLLDIMKE 337          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 7.660e-41
Identity = 81/153 (52.94%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKILKE 459
            ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +  Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +   G L I+KE
Sbjct:   34 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGF-CVGLLDIMKE 185          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.520e-40
Identity = 82/153 (53.59%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKILKE 459
            ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +   G L I+KE
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGF-CVGLLDIMKE 337          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.830e-40
Identity = 82/153 (53.59%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKILKE 459
            ANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +   G L I+KE
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGF-CVGLLDIMKE 337          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 4.380e-40
Identity = 81/153 (52.94%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKILKE 459
            ANLSALG+K RP+A G VLRR+I   FC +Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +   G L I+KE
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGF-CVGLLDIMKE 337          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.830e-39
Identity = 81/153 (52.94%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKILKE 459
            ANLSALG+K RP+A G VLRR+I   F R+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A + P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +   G L I+KE
Sbjct:   34 ANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGF-CVGLLDIMKE 185          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.070e-37
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQ 399
            A+LSALG+K RP+A G VLRR+I   FCR+Y + +AD F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NSI R   L A+A   P +V Y  NLYAR   KLLF ++ G  E+V S R VQQ
Sbjct:   34 ASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.940e-21
Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    4 NLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGP 417
            +L ALG+K RPV  G   RR+I A   R +  KL + F+   Q+GVAV+GGVE +A+ A L  + G  ++  D +NAFN+  R   +   A+ VP +V Y +  Y   P K ++ +D G    +E   GVQQG  +GP
Sbjct:   71 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGP 208          
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.860e-21
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    4 NLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGP 417
            +L ALG+K RPV  G   RR+I A   R +  KL + F+   Q+GVAV+GGVE +A+ A L  + G  ++  D +NAFN+  R   +   A+ VP +V Y +  Y   P K ++A+D G    +E   GVQQG  +GP
Sbjct:  446 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGP 583          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1505.3519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN4.210e-5258.17Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KQ62_9PHAE3.270e-4253.59Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE7.660e-4152.94Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCM0_9PHAE2.520e-4053.59Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE2.830e-4053.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGJ4_9PHAE4.380e-4052.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE1.830e-3952.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3H3_9PHAE2.070e-3753.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4Y4_9PHAE1.940e-2139.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE8.860e-2139.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1505contigF-serratus_M_contig1505:68649..69107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog400682.PAC_15702057
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.4543202-CDS-F-serratus_M_contig1505:68648..691071622929493.4543202-CDS-F-serratus_M_contig1505:68648..69107Fucus serratus maleCDSF-serratus_M_contig1505 68649..69107 +
1690962878.5956323-CDS-F-serratus_M_contig1505:68648..691071690962878.5956323-CDS-F-serratus_M_contig1505:68648..69107Fucus serratus maleCDSF-serratus_M_contig1505 68649..69107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1505.3519.1prot_F-serratus_M_contig1505.3519.1Fucus serratus malepolypeptideF-serratus_M_contig1505 68649..69107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1505.3519.1

>prot_F-serratus_M_contig1505.3519.1 ID=prot_F-serratus_M_contig1505.3519.1|Name=mRNA_F-serratus_M_contig1505.3519.1|organism=Fucus serratus male|type=polypeptide|length=153bp
ANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVS
GGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVP
YASNLYAREPPKLLFALDGGGSEVVESTRGVQQGCNLGPLCYYSAGSLKI
LKE
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mRNA from alignment at F-serratus_M_contig1505:68649..69107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1505.3519.1 ID=mRNA_F-serratus_M_contig1505.3519.1|Name=mRNA_F-serratus_M_contig1505.3519.1|organism=Fucus serratus male|type=mRNA|length=459bp|location=Sequence derived from alignment at F-serratus_M_contig1505:68649..69107+ (Fucus serratus male)
GCTAACCTTTCCGCGTTGGGACAGAAGGCGAGACCAGTGGCGTGCGGCGA TGTCTTGCGGAGAGTTATTGGCGCTGTTTTCTGCCGCCGATACGGCAGGA AACTGGCGGACTACTTCCAGCCCTGGGGCCAGTACGGCGTAGCAGTTTCA GGCGGAGTAGAGATAATGGCCCTCACAGCGACACTGGGTTTCGAAGAGGG TTGCACCATTCTCTCATACGACGGAGCAAACGCCTTTAACAGCATATACC GCCACAGGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCTCAGTGGTCCCC TACGCATCAAACCTGTACGCACGGGAACCCCCAAAACTTTTGTTTGCACT AGACGGTGGAGGTTCCGAAGTGGTTGAGTCAACTCGGGGAGTACAGCAAG GATGTAATCTAGGTCCACTTTGCTACTACAGCGCAGGCTCACTGAAGATC CTAAAAGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1505:68649..69107+

>mRNA_F-serratus_M_contig1505.3519.1 ID=mRNA_F-serratus_M_contig1505.3519.1|Name=mRNA_F-serratus_M_contig1505.3519.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig1505:68649..69107+ (Fucus serratus male)
GCTAACCTTTCCGCGTTGGGACAGAAGGCGAGACCAGTGGCGTGCGGCGA
TGTCTTGCGGAGAGTTATTGGCGCTGTTTTCTGCCGCCGATACGGCAGGA
AACTGGCGGACTACTTCCAGCCCTGGGGCCAGTACGGCGTAGCAGTTTCA
GGCGGAGTAGAGATAATGGCCCTCACAGCGACACTGGGTTTCGAAGAGGG
TTGCACCATTCTCTCATACGACGGAGCAAACGCCTTTAACAGCATATACC
GCCACAGGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCTCAGTGGTCCCC
TACGCATCAAACCTGTACGCACGGGAACCCCCAAAACTTTTGTTTGCACT
AGACGGTGGAGGTTCCGAAGTGGTTGAGTCAACTCGGGGAGTACAGCAAG
GATGTAATCTAGGTCCACTTTGCTACTACAGCGCAGGCTCACTGAAGATC
CTAAAAGAAGCTAACCTTTCCGCGTTGGGACAGAAGGCGAGACCAGTGGC
GTGCGGCGATGTCTTGCGGAGAGTTATTGGCGCTGTTTTCTGCCGCCGAT
ACGGCAGGAAACTGGCGGACTACTTCCAGCCCTGGGGCCAGTACGGCGTA
GCAGTTTCAGGCGGAGTAGAGATAATGGCCCTCACAGCGACACTGGGTTT
CGAAGAGGGTTGCACCATTCTCTCATACGACGGAGCAAACGCCTTTAACA
GCATATACCGCCACAGGTTCCTGCCCGCGCTAGCCGAAATCGTTCCCTCA
GTGGTCCCCTACGCATCAAACCTGTACGCACGGGAACCCCCAAAACTTTT
GTTTGCACTAGACGGTGGAGGTTCCGAAGTGGTTGAGTCAACTCGGGGAG
TACAGCAAGGATGTAATCTAGGTCCACTTTGCTACTACAGCGCAGGCTCA
CTGAAGATCCTAAAAGAA
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