mRNA_F-serratus_M_contig1504.3518.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1504.3518.1
Unique NamemRNA_F-serratus_M_contig1504.3518.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1504.3518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1504contigF-serratus_M_contig1504:119558..120054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size497
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1504.3518.1prot_F-serratus_M_contig1504.3518.1Fucus serratus malepolypeptideF-serratus_M_contig1504 119647..120000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.3759158-UTR-F-serratus_M_contig1504:119557..1196461622929493.3759158-UTR-F-serratus_M_contig1504:119557..119646Fucus serratus maleUTRF-serratus_M_contig1504 119558..119646 +
1690962878.559284-UTR-F-serratus_M_contig1504:119557..1196461690962878.559284-UTR-F-serratus_M_contig1504:119557..119646Fucus serratus maleUTRF-serratus_M_contig1504 119558..119646 +
1622929493.4065592-UTR-F-serratus_M_contig1504:120000..1200541622929493.4065592-UTR-F-serratus_M_contig1504:120000..120054Fucus serratus maleUTRF-serratus_M_contig1504 120001..120054 +
1690962878.580711-UTR-F-serratus_M_contig1504:120000..1200541690962878.580711-UTR-F-serratus_M_contig1504:120000..120054Fucus serratus maleUTRF-serratus_M_contig1504 120001..120054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.3913448-CDS-F-serratus_M_contig1504:119646..1200001622929493.3913448-CDS-F-serratus_M_contig1504:119646..120000Fucus serratus maleCDSF-serratus_M_contig1504 119647..120000 +
1690962878.570668-CDS-F-serratus_M_contig1504:119646..1200001690962878.570668-CDS-F-serratus_M_contig1504:119646..120000Fucus serratus maleCDSF-serratus_M_contig1504 119647..120000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1504.3518.1

>prot_F-serratus_M_contig1504.3518.1 ID=prot_F-serratus_M_contig1504.3518.1|Name=mRNA_F-serratus_M_contig1504.3518.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MLGNISNMHNSNQKQSAPQEKHRNRNPEFFTPISQSKCNFNTTALFIHVG
SLPSSFSKAKHANRMFRMAPQGKQYCNMKIHVCSVCCTFKTGYNMDIPPP
PNPMFRILTQGKRGTVN*
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mRNA from alignment at F-serratus_M_contig1504:119558..120054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1504.3518.1 ID=mRNA_F-serratus_M_contig1504.3518.1|Name=mRNA_F-serratus_M_contig1504.3518.1|organism=Fucus serratus male|type=mRNA|length=497bp|location=Sequence derived from alignment at F-serratus_M_contig1504:119558..120054+ (Fucus serratus male)
GTCCAGAAATATCAGGAAAAAAAAAAAACAAGTCAAAGCTCATTATTTTA
TTATACTTTTCAAGTCGAACATATACCTTTTTCCAAATCATGTTAGGAAA
TATCAGCAACATGCATAATTCAAATCAGAAACAATCAGCCCCTCAAGAAA
AACATCGCAACCGAAACCCTGAGTTCTTCACGCCAATTTCTCAATCCAAG
TGTAATTTCAACACAACAGCATTATTTATTCATGTTGGCTCTCTACCCTC
ATCATTCTCAAAAGCAAAACATGCTAATCGAATGTTTCGGATGGCACCGC
AAGGAAAACAGTACTGTAACATGAAAATACATGTTTGCAGTGTGTGCTGC
ACGTTCAAAACAGGATACAATATGGATATTCCGCCTCCCCCGAATCCAAT
GTTTCGGATACTGACGCAGGGAAAACGCGGTACTGTAAACTGAAAATGCC
TGTTAGCAGTTACCGCGGGGGCGAGCTGCAAGTTTAAAACAGGGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1504:119558..120054+

>mRNA_F-serratus_M_contig1504.3518.1 ID=mRNA_F-serratus_M_contig1504.3518.1|Name=mRNA_F-serratus_M_contig1504.3518.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig1504:119558..120054+ (Fucus serratus male)
ATGTTAGGAAATATCAGCAACATGCATAATTCAAATCAGAAACAATCAGC
CCCTCAAGAAAAACATCGCAACCGAAACCCTGAGTTCTTCACGCCAATTT
CTCAATCCAAGTGTAATTTCAACACAACAGCATTATTTATTCATGTTGGC
TCTCTACCCTCATCATTCTCAAAAGCAAAACATGCTAATCGAATGTTTCG
GATGGCACCGCAAGGAAAACAGTACTGTAACATGAAAATACATGTTTGCA
GTGTGTGCTGCACGTTCAAAACAGGATACAATATGGATATTCCGCCTCCC
CCGAATCCAATGTTTCGGATACTGACGCAGGGAAAACGCGGTACTGTAAA
CTGAATGTTAGGAAATATCAGCAACATGCATAATTCAAATCAGAAACAAT
CAGCCCCTCAAGAAAAACATCGCAACCGAAACCCTGAGTTCTTCACGCCA
ATTTCTCAATCCAAGTGTAATTTCAACACAACAGCATTATTTATTCATGT
TGGCTCTCTACCCTCATCATTCTCAAAAGCAAAACATGCTAATCGAATGT
TTCGGATGGCACCGCAAGGAAAACAGTACTGTAACATGAAAATACATGTT
TGCAGTGTGTGCTGCACGTTCAAAACAGGATACAATATGGATATTCCGCC
TCCCCCGAATCCAATGTTTCGGATACTGACGCAGGGAAAACGCGGTACTG
TAAACTGA
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