mRNA_F-serratus_M_contig1503.3515.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1503.3515.1
Unique NamemRNA_F-serratus_M_contig1503.3515.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1503.3515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1503contigF-serratus_M_contig1503:10973..15327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size682
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1503.3515.1prot_F-serratus_M_contig1503.3515.1Fucus serratus malepolypeptideF-serratus_M_contig1503 10973..15309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929492.6558757-CDS-F-serratus_M_contig1503:10972..111441622929492.6558757-CDS-F-serratus_M_contig1503:10972..11144Fucus serratus maleCDSF-serratus_M_contig1503 10973..11144 -
1690962878.1954935-CDS-F-serratus_M_contig1503:10972..111441690962878.1954935-CDS-F-serratus_M_contig1503:10972..11144Fucus serratus maleCDSF-serratus_M_contig1503 10973..11144 -
1622929492.671081-CDS-F-serratus_M_contig1503:14100..144121622929492.671081-CDS-F-serratus_M_contig1503:14100..14412Fucus serratus maleCDSF-serratus_M_contig1503 14101..14412 -
1690962878.2038996-CDS-F-serratus_M_contig1503:14100..144121690962878.2038996-CDS-F-serratus_M_contig1503:14100..14412Fucus serratus maleCDSF-serratus_M_contig1503 14101..14412 -
1622929492.6846068-CDS-F-serratus_M_contig1503:15130..153091622929492.6846068-CDS-F-serratus_M_contig1503:15130..15309Fucus serratus maleCDSF-serratus_M_contig1503 15131..15309 -
1690962878.211545-CDS-F-serratus_M_contig1503:15130..153091690962878.211545-CDS-F-serratus_M_contig1503:15130..15309Fucus serratus maleCDSF-serratus_M_contig1503 15131..15309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929492.6975737-UTR-F-serratus_M_contig1503:15309..153271622929492.6975737-UTR-F-serratus_M_contig1503:15309..15327Fucus serratus maleUTRF-serratus_M_contig1503 15310..15327 -
1690962878.2191408-UTR-F-serratus_M_contig1503:15309..153271690962878.2191408-UTR-F-serratus_M_contig1503:15309..15327Fucus serratus maleUTRF-serratus_M_contig1503 15310..15327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1503.3515.1

>prot_F-serratus_M_contig1503.3515.1 ID=prot_F-serratus_M_contig1503.3515.1|Name=mRNA_F-serratus_M_contig1503.3515.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MTSPSYVLFGVCLGIMLWSGTLLDKRQRRELARYGFRPGMPFIWTHESLS
SEARGFLIESEFNRSAGHVLFPYEYEYNVDELGSVGEGLSLVGGALDVFS
TPPWTDINQVSVGKPVTIYSKKVEDVSQTARVGFRIPMTVTGTTIATLLG
IFLCCAVGCIVKRWRWRALCSGCIGRFVVASAGWPAAVLKAMSSALISII
PPLISMLPTAPRAAFSKTSPV
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mRNA from alignment at F-serratus_M_contig1503:10973..15327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1503.3515.1 ID=mRNA_F-serratus_M_contig1503.3515.1|Name=mRNA_F-serratus_M_contig1503.3515.1|organism=Fucus serratus male|type=mRNA|length=4355bp|location=Sequence derived from alignment at F-serratus_M_contig1503:10973..15327- (Fucus serratus male)
TCCTACCTGTACCTGATCATGACATCCCCATCTTACGTATTGTTCGGGGT
GTGTTTGGGTATTATGTTGTGGAGTGGGACTCTCCTCGATAAAAGACAAC
GGCGTGAGCTAGCGCGCTACGGTTTCAGGCCGGGAATGCCTTTTATCTGG
ACCCACGAATCGCTCTCGTCTGAAGCACGAGGATTCTTGATTGAAAGGTG
AGGAGCATCCCTTCAAGGAGCTGCGGTAATAATTGACCAACGTGATGTAC
ACCGTCCGGGGCAAAGCGGACATTGCTTCGTCCAGGCTATTATGTGCTCA
GCTACTCTCTTTGTGCTGTTAGATTTGTGCAGTACTTAGATTCGAGTAAA
CGGTTGCCGGCAACGACGGTTATGGGTTGCAAGTAGAGACAGAGCACAAG
TACGAGTACCGTTGGTGTTTTCTGGTATGGATGGATATTTGTTATTTGCC
CTATCGGTGTGGGGATTCCGCTGTACCCCACCGGCCGTAACAGCACGTAG
GCACGACCGTTTGGGCTGCACGATAGACCCCATGGTAGCCCTGCAACGCG
CCAGCACACTCATGCATGTACTACTGTGACCAACCGAGTCTTCTGGCGCG
AGACCCAGGCGATGGGGTGAATATGGAAATGCCCCACCGGTGGGGCAAAT
AGCCATATAGTATAATATTTAGTAGTACTTCTGTACCAGGTACACAGTAC
ATTGTACGAAGTACGTATATTTTAAGGGCATACAAGTACGAGCAGCGATA
GATACTAAATAACATGTCTCGTTCGGCATTGGGCGAGGGACCTCTACGCC
GCATCGACGTCCACCTGGTCAAGGGATATTCAAGAAATAACGACCGTTGT
TAACTTTTGTTTCACCTTTCGACGTCTTCGCTTGCCTCTATTTTCGTGTC
ACGGTCCTTCGACAGTGAATTCAACCGAAGTGCAGGACATGTGTTATTTC
CCTATGAATACGAGTACAACGTTGACGAGCTAGGCTCTGTCGGAGAAGGC
CTTTCTCTGGTAGGTGGCGCCTTAGATGTCTTTTCGACACCACCATGGAC
GGACATCAATCAGGTCTCCGTGGGCAAGCCGGTTACGATTTATTCAAAGA
AGGTGGAAGATGTTAGCCAAACCGCTCGGGTCGGCTTCAGGATCCCCATG
ACCGTGACCGGGACTACCATCGCGACTCTTCTGGGCATATTCCTGTGCTG
CGCGGTCGGCTGCATTGTTAAACGCTGGTGAGCACTCGGGTATTCGGTGG
GTCGAAGGTCTTCTAGCTCTCTGGCCCTGTAAAGTGTGCGGGCGTGTTTT
GGTCTGGGTCTGGGTCGTTTGTGTGTGTGTTTAACCTCACCCTAAATACA
GACAGTATAATTATGGTCAGCATGTTCATTCAGCAGATTGTGGATCAACC
GTTTCCAATCCTCCCTGCTGTCAACTTAAAAGCGGAGATTAGTACGTGCC
CCCTCTCTCCGTTCGCATATCAGAATTTAGTCTCGCGAGACGGGTTCGGC
CGTATCTTCTCGCGTCAGCCCACTCTTTCCACCCTGGTTCAAGCTGGTTC
TAACTCATGGGTCCTCCCGATTTCCGCAACGGCGTCCATCTATACCGCCA
ACCGCTATCGTGTCAGTCCCGAGTTTATGAGGTCACACATGTCCGCTTAT
AACTCCTACAGCATTCCGACAGTGGATATGGAAAAGACAAGGGCGCATAA
AAATTAGTCCATGGTAATAAAACCTGAAAAGGCAGCACCCGTTACTGGAA
CTACCTTGAGGACTACTGGCCCTGTCCCGGCGGACTCTCGACAGTGAACG
CCATCGGTACGCAATTGCGGAACCAGATATATACCTGGTACTTGGGATTG
ACCCCATGACGATGGACGATATAAAAAAGTGGACATCGTCAGTGAAAGGG
GGAGGAATCCCGCGAGTAAGCACTAGATTCAGCCTGAGTGCGGAGAATGA
TCAAACTTTGGCTGGACGGGATGGTCGAAGCTGTCTCGCGATACAGAATT
CTCAGGCACGAACGGGGACAGGAAAAAAACAATTTTGCCTGTTCAGCAGA
CCACGAGAAGAATTGGCTATCTTACCCATTTGAATTTAATGTAGTTTGCT
ACCGTATGTTGTTTAAAAAAAATCAGAACGCGCCTATGATATGCCTTCGT
TGTTGTTGTTTTCTTGACATAAAGGCCTCAACCATACCCAGTAATATACG
TGGTTGCCAAGCCGGTACGTAGTCTGCTGGACAGGAAAAGATCTGAGGGA
CATCTATAAAGCTCCAACGAAAGAAAAAACACAAGCGCAAAAAAGAAAGG
AACAATAACAAAATACAGATGACAGAAAATGATAGAAGGTCACTGGATAG
AGATAGTTTGGTATAGTGCCAGCCGCGAGCCATCCGATACCCTCCTCGGA
TCGCAACCATGCACCACATCCAAACGTATATCATCTACCACACTCCGTAC
TCTCAGGGTTTCAGTTTTCTCTAACGGCACAGTCGACGTCGCTTAGGGAG
TTCTTGGGTTGGCCCAATCAACGCGGCTCGAAAGCGTCTCAAGCTTGCTG
CAATTACCCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTTCTCTC
TTATTCTGCCGATGCTTGGACGCATTTTCTTTTCCCTTCACTTACGCGGA
CATACACCTGCAGTATGATAACCATACGTTCATACTAAATGGACGCCGCC
GCGGAAATCGGGAGGAATCCCGTGAGTAAGCATCAGATTCAGCCTGGATG
TGGAGAATAAGCATGCTAACGCGGGATGGGACGGTCAAACCCGTCTCGCG
AGATTAAATTATCAGGCGCGCGCGAACGGGGACAGGAAAAAAACATTTTT
TTCTGCTCAGCAGACCATGAGAAGGATTATCCTGTCTAATGACCTGTAAG
ATATGCCTCAATTTTTGTGGAGTACTATTATTAACCCTTTTGGTACTATC
GGTCTGACAACGGCTATTTTTTTCTTCTTGACAGTCCTGTGCTACTCGCG
CTACTTTGCATGGGCCAGCCACCATGATCATTCATTTTACAGTATATTGT
TTACATATCCCAAGTAGTATACGCCTACTTCGTCTCTAGCCGTTATTGTT
AAGCGGTTGTTAGTACCAAACTAGTACGACATTTTTCAGGAATGTTTAGT
AAAGTCAAGTGAAGAACAAAGTTGGTTTGGGGTTTACATTTTGTACCGTG
CACAGGTTTGCGGGGTTGATTCGTGGTATATCCTTGCTGAGCCGCATCTT
GGGATTGCTTTTAGTTTGGGAAGGTACCGTACTCGGGCTCCTGACCTCGC
TGCCCAATCAAGGCTAGAAAATAAACAGGCGGTCGACCGCCTGTTAAGCC
CTCTCAAGTACCAAAGGGGTTAATAGTTTAATTACGCTGATACTTTCAAC
ACGCCCACTTCATACCAATAATAGTATAGTGAGTGTGGGAAAAGAGAGGG
GCGCATATTATTTGGTCCATGGTGACCTGCGAAGCCAGCACTCGTTCGGT
ACTACCTCGAGACCTACTGGCCCTGCGGCGACGGACTCTCGGCAGTGAAC
GCCATCGGTACGCAATTGGGTGACCCGATAAACTGGGGACTGACCCAATG
GTGTATGGCGGTTTAAATACATAAATGGTGCCGCCTCGGAACTCGGGAGG
AATCCCGTAAGTAAGCACCAGATTCAGCTTGAGTATGACGATGAGCAGGC
TGACGCGGGACGGGAAACTGCCGAATCTGTCTCGCGAGACCAAATTCTCA
AGCGCGAACACGGACAGGGAAAAAAACATTCTCCCTGTTCAGCTGACCAC
GAGCAGGATTGGCAACGTTACCCGGTTGATGCATACTCTTACCATATGTG
TGACCAGACATTATATGGGGCAGATATGCCACCGGCTTATCGGAAGCCTA
CTATTATAGCGTGCGTACGTAGATCAGCGTAAAATCGCCGTAGCTAACCG
CTTCAATAGCCACGCATTTCTAACGCTCAAACAAGCACAGACGGCAAATG
CGATCAACCTTACCCCGAGGAAGATTCATGGCATCACTCGGAGCAAGATC
TCAATACCCCCGTGTACAGCTGCGCCACAATACGCTTTACATTTCTCTTA
CACAAGCAAATTCTCTGACCAACAGTTTTGTCCCTACGTATGTATTCGTC
CTTCGTCCCCCCCCCCCCCCCCCCAACGCTCAGGAGGTGGAGAGCGCTTT
GTTCCGGATGTATCGGGCGCTTTGTTGTGGCTTCCGCTGGTTGGCCCGCT
GCTGTGTTGAAAGCGATGTCCTCAGCACTGATTTCAATCATCCCTCCGCT
AATCTCGATGCTTCCGACGGCTCCAAGGGCAGCATTTAGCAAGACCTCAC
CCGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1503:10973..15327-

>mRNA_F-serratus_M_contig1503.3515.1 ID=mRNA_F-serratus_M_contig1503.3515.1|Name=mRNA_F-serratus_M_contig1503.3515.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig1503:10973..15327- (Fucus serratus male)
ATGACATCCCCATCTTACGTATTGTTCGGGGTGTGTTTGGGTATTATGTT
GTGGAGTGGGACTCTCCTCGATAAAAGACAACGGCGTGAGCTAGCGCGCT
ACGGTTTCAGGCCGGGAATGCCTTTTATCTGGACCCACGAATCGCTCTCG
TCTGAAGCACGAGGATTCTTGATTGAAAGATGACATCCCCATCTTACGTA
TTGTTCGGGGTGTGTTTGGGTATTATGTTGTGGAGTGGGACTCTCCTCGA
TAAAAGACAACGGCGTGAGCTAGCGCGCTACGGTTTCAGGCCGGGAATGC
CTTTTATCTGGACCCACGAATCGCTCTCGTCTGAAGCACGAGGATTCTTG
ATTGAAAGTGAATTCAACCGAAGTGCAGGACATGTGTTATTTCCCTATGA
ATACGAGTACAACGTTGACGAGCTAGGCTCTGTCGGAGAAGGCCTTTCTC
TGGTAGGTGGCGCCTTAGATGTCTTTTCGACACCACCATGGACGGACATC
AATCAGGTCTCCGTGGGCAAGCCGGTTACGATTTATTCAAAGAAGGTGGA
AGATGTTAGCCAAACCGCTCGGGTCGGCTTCAGGATCCCCATGACCGTGA
CCGGGACTACCATCGCGACTCTTCTGGGCATATTCCTGTGCTGCGCGGTC
GGCTGCATTGTTAAACGCTGTGAATTCAACCGAAGTGCAGGACATGTGTT
ATTTCCCTATGAATACGAGTACAACGTTGACGAGCTAGGCTCTGTCGGAG
AAGGCCTTTCTCTGGTAGGTGGCGCCTTAGATGTCTTTTCGACACCACCA
TGGACGGACATCAATCAGGTCTCCGTGGGCAAGCCGGTTACGATTTATTC
AAAGAAGGTGGAAGATGTTAGCCAAACCGCTCGGGTCGGCTTCAGGATCC
CCATGACCGTGACCGGGACTACCATCGCGACTCTTCTGGGCATATTCCTG
TGCTGCGCGGTCGGCTGCATTGTTAAACGCTGGAGGTGGAGAGCGCTTTG
TTCCGGATGTATCGGGCGCTTTGTTGTGGCTTCCGCTGGTTGGCCCGCTG
CTGTGTTGAAAGCGATGTCCTCAGCACTGATTTCAATCATCCCTCCGCTA
ATCTCGATGCTTCCGACGGCTCCAAGGGCAGCATTTAGCAAGACCTCACC
CGTCGAGGTGGAGAGCGCTTTGTTCCGGATGTATCGGGCGCTTTGTTGTG
GCTTCCGCTGGTTGGCCCGCTGCTGTGTTGAAAGCGATGTCCTCAGCACT
GATTTCAATCATCCCTCCGCTAATCTCGATGCTTCCGACGGCTCCAAGGG
CAGCATTTAGCAAGACCTCACCCGTC
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