mRNA_F-serratus_M_contig150.3508.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig150.3508.1
Unique NamemRNA_F-serratus_M_contig150.3508.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig150.3508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig150contigF-serratus_M_contig150:750556..751017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size418
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig150.3508.1prot_F-serratus_M_contig150.3508.1Fucus serratus malepolypeptideF-serratus_M_contig150 750627..750889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.7271922-UTR-F-serratus_M_contig150:750555..7506261622929485.7271922-UTR-F-serratus_M_contig150:750555..750626Fucus serratus maleUTRF-serratus_M_contig150 750556..750626 +
1690962875.0332708-UTR-F-serratus_M_contig150:750555..7506261690962875.0332708-UTR-F-serratus_M_contig150:750555..750626Fucus serratus maleUTRF-serratus_M_contig150 750556..750626 +
1622929485.7839038-UTR-F-serratus_M_contig150:750889..7510171622929485.7839038-UTR-F-serratus_M_contig150:750889..751017Fucus serratus maleUTRF-serratus_M_contig150 750890..751017 +
1690962875.067593-UTR-F-serratus_M_contig150:750889..7510171690962875.067593-UTR-F-serratus_M_contig150:750889..751017Fucus serratus maleUTRF-serratus_M_contig150 750890..751017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.7513735-CDS-F-serratus_M_contig150:750626..7508321622929485.7513735-CDS-F-serratus_M_contig150:750626..750832Fucus serratus maleCDSF-serratus_M_contig150 750627..750832 +
1690962875.0456688-CDS-F-serratus_M_contig150:750626..7508321690962875.0456688-CDS-F-serratus_M_contig150:750626..750832Fucus serratus maleCDSF-serratus_M_contig150 750627..750832 +
1622929485.769594-CDS-F-serratus_M_contig150:750876..7508891622929485.769594-CDS-F-serratus_M_contig150:750876..750889Fucus serratus maleCDSF-serratus_M_contig150 750877..750889 +
1690962875.0587552-CDS-F-serratus_M_contig150:750876..7508891690962875.0587552-CDS-F-serratus_M_contig150:750876..750889Fucus serratus maleCDSF-serratus_M_contig150 750877..750889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig150.3508.1

>prot_F-serratus_M_contig150.3508.1 ID=prot_F-serratus_M_contig150.3508.1|Name=mRNA_F-serratus_M_contig150.3508.1|organism=Fucus serratus male|type=polypeptide|length=73bp
MKVCNQAFLKTFRLPFFAFATLWHCSYAGGRRSSRRKGPLRFLLTVAGLL
FTRAKRRSFVFLTALHVRSVFH*
back to top

mRNA from alignment at F-serratus_M_contig150:750556..751017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig150.3508.1 ID=mRNA_F-serratus_M_contig150.3508.1|Name=mRNA_F-serratus_M_contig150.3508.1|organism=Fucus serratus male|type=mRNA|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig150:750556..751017+ (Fucus serratus male)
CGCTGTGCTAGTTCGACGTGGTACTGAGGGTGAGCTTGTTATCTAGTTCA
CTTGAGAGTGGTCGACAGGGTATGAAAGTCTGTAATCAAGCTTTTCTCAA
AACCTTTCGTTTACCTTTTTTTGCCTTTGCTACCCTTTGGCATTGTAGCT
ATGCTGGGGGGCGTAGAAGCTCGCGCAGAAAAGGCCCCCTCCGGTTCCTA
CTCACGGTGGCAGGTCTTCTTTTTACGCGCGCGAAGCGCAGAAGTTTTGT
TTTCTTGACTGCCCTTCATGTTCGCTCCGACTCGAGCAATAACAGACTTA
TTCGTATTTCATTCGTTCATTCGTATTTCATTGATTATTTCATATATTGG
TTAATATTTTGATTGACTGATTGATAAATTGTTTGACACGCGATCAAGAA
AAAAAAAGTATGCATATCATTTTTACAAACACCTGGTATCCACGCGAAAA
GTTGACCCTCGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig150:750556..751017+

>mRNA_F-serratus_M_contig150.3508.1 ID=mRNA_F-serratus_M_contig150.3508.1|Name=mRNA_F-serratus_M_contig150.3508.1|organism=Fucus serratus male|type=CDS|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig150:750556..751017+ (Fucus serratus male)
ATGAAAGTCTGTAATCAAGCTTTTCTCAAAACCTTTCGTTTACCTTTTTT
TGCCTTTGCTACCCTTTGGCATTGTAGCTATGCTGGGGGGCGTAGAAGCT
CGCGCAGAAAAGGCCCCCTCCGGTTCCTACTCACGGTGGCAGGTCTTCTT
TTTACGCGCGCGAAGCGCAGAAGTTTTGTTTTCTTGACTGCCCTTCATGT
TCGCTCATGAAAGTCTGTAATCAAGCTTTTCTCAAAACCTTTCGTTTACC
TTTTTTTGCCTTTGCTACCCTTTGGCATTGTAGCTATGCTGGGGGGCGTA
GAAGCTCGCGCAGAAAAGGCCCCCTCCGGTTCCTACTCACGGTGGCAGGT
CTTCTTTTTACGCGCGCGAAGCGCAGAAGTTTTGTTTTCTTGACTGCCCT
TCATGTTCGCTCCGTATTTCATTGACGTATTTCATTGA
back to top