mRNA_F-serratus_M_contig150.3502.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig150.3502.1
Unique NamemRNA_F-serratus_M_contig150.3502.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig150.3502.1 vs. uniprot
Match: A0A6H5KBD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.780e-5
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = -1 
Query:  427 QEREKTISGAWDPEIGARRVVRLPEKTEEQTRRPE 531
            QER  T+ G WDPEIGARR VRLPE T EQTRR E
Sbjct:   33 QERGDTVRGGWDPEIGARREVRLPELTPEQTRRKE 67
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BLAST of mRNA_F-serratus_M_contig150.3502.1 vs. uniprot
Match: D7FIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 5.860e-5
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = -1 
Query:  427 QEREKTISGAWDPEIGARRVVRLPEKTEEQTRRPE 531
            QER  T+SG WDPEIGARR V+LP+ T EQTRR E
Sbjct: 1140 QERGDTVSGGWDPEIGARREVQLPQLTPEQTRRKE 1174
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig150.3502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBD8_9PHAE2.780e-574.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN4_ECTSI5.860e-571.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig150contigF-serratus_M_contig150:542499..543065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.909611-UTR-F-serratus_M_contig150:542498..5427231622929485.909611-UTR-F-serratus_M_contig150:542498..542723Fucus serratus maleUTRF-serratus_M_contig150 542499..542723 +
1690962875.0953434-UTR-F-serratus_M_contig150:542498..5427231690962875.0953434-UTR-F-serratus_M_contig150:542498..542723Fucus serratus maleUTRF-serratus_M_contig150 542499..542723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.9267287-CDS-F-serratus_M_contig150:542723..5430651622929485.9267287-CDS-F-serratus_M_contig150:542723..543065Fucus serratus maleCDSF-serratus_M_contig150 542724..543065 +
1690962875.104975-CDS-F-serratus_M_contig150:542723..5430651690962875.104975-CDS-F-serratus_M_contig150:542723..543065Fucus serratus maleCDSF-serratus_M_contig150 542724..543065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig150.3502.1prot_F-serratus_M_contig150.3502.1Fucus serratus malepolypeptideF-serratus_M_contig150 542724..543065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig150.3502.1

>prot_F-serratus_M_contig150.3502.1 ID=prot_F-serratus_M_contig150.3502.1|Name=mRNA_F-serratus_M_contig150.3502.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MPCFSIDDDPAPIPAPVASRSTNLGVNSGSGSNSPSTSHAAAPSPSCPCC
SCLGMSRPRCCRVGQEYFRPPGLLLRFFREPNHPPRSDLRVPGPADRLLA
FLKTRFVGTQGTN*
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mRNA from alignment at F-serratus_M_contig150:542499..543065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig150.3502.1 ID=mRNA_F-serratus_M_contig150.3502.1|Name=mRNA_F-serratus_M_contig150.3502.1|organism=Fucus serratus male|type=mRNA|length=567bp|location=Sequence derived from alignment at F-serratus_M_contig150:542499..543065+ (Fucus serratus male)
GAAAGAGAATCGGCGCCGAAGACGTGCTACTTCCGTCCCTTCCGCCAGAT
GTTGGGACTCGTTGGAGTGTGTCTCCGACCTGTGCTGTACCCGTCTGACG
GCGAGCTCCTTGATGAGGGCATGCACGTCTGAGCCAACCTCACCACATGT
CGACATAGCGAGGGGAAGGAGGGAGTAGGTAGCGAGGAACGAGCCCCGAT
TCTTGCCAGTCACCCGTTTGATGTCATGCCGTGCTTTTCGATAGACGACG
ACCCGGCCCCGATCCCTGCCCCGGTCGCCTCGCGATCGACGAACCTGGGC
GTTAACTCAGGATCCGGATCGAACAGTCCCTCCACCTCACACGCGGCCGC
GCCATCTCCCTCCTGCCCCTGCTGCTCCTGCTTAGGCATGAGCAGACCAC
GCTGCTGCCGGGTCGGCCAGGAGTACTTCAGGCCGCCGGGTCTGCTCCTC
CGTTTTTTCCGGGAGCCTAACCACCCGCCGCGCTCCGATCTCAGGGTCCC
AGGCCCCGCTGATCGTCTTCTCGCGTTCCTGAAGACACGGTTCGTTGGGA
CACAAGGCACGAATTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig150:542499..543065+

>mRNA_F-serratus_M_contig150.3502.1 ID=mRNA_F-serratus_M_contig150.3502.1|Name=mRNA_F-serratus_M_contig150.3502.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig150:542499..543065+ (Fucus serratus male)
ATGCCGTGCTTTTCGATAGACGACGACCCGGCCCCGATCCCTGCCCCGGT
CGCCTCGCGATCGACGAACCTGGGCGTTAACTCAGGATCCGGATCGAACA
GTCCCTCCACCTCACACGCGGCCGCGCCATCTCCCTCCTGCCCCTGCTGC
TCCTGCTTAGGCATGAGCAGACCACGCTGCTGCCGGGTCGGCCAGGAGTA
CTTCAGGCCGCCGGGTCTGCTCCTCCGTTTTTTCCGGGAGCCTAACCACC
CGCCGCGCTCCGATCTCAGGGTCCCAGGCCCCGCTGATCGTCTTCTCGCG
TTCCTGAAGACACGGTTCGTTGGGACACAAGGCACGAATTAGATGCCGTG
CTTTTCGATAGACGACGACCCGGCCCCGATCCCTGCCCCGGTCGCCTCGC
GATCGACGAACCTGGGCGTTAACTCAGGATCCGGATCGAACAGTCCCTCC
ACCTCACACGCGGCCGCGCCATCTCCCTCCTGCCCCTGCTGCTCCTGCTT
AGGCATGAGCAGACCACGCTGCTGCCGGGTCGGCCAGGAGTACTTCAGGC
CGCCGGGTCTGCTCCTCCGTTTTTTCCGGGAGCCTAACCACCCGCCGCGC
TCCGATCTCAGGGTCCCAGGCCCCGCTGATCGTCTTCTCGCGTTCCTGAA
GACACGGTTCGTTGGGACACAAGGCACGAATTAG
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