mRNA_F-serratus_M_contig1492.3393.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1492.3393.1
Unique NamemRNA_F-serratus_M_contig1492.3393.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: A0A8B6FNU1_MYTGA (NADAR domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FNU1_MYTGA)

HSP 1 Score: 104 bits (259), Expect = 1.610e-26
Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQT----------GDNLWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            I+A+D PREQKRLGR V++FD  LW  +C NI++ GN  KFSQNEE+   L++T           D +WGIG    DP A  P  W G N LG+ L   R
Sbjct:   55 IMATDSPREQKRLGRSVKNFDQTLWNEKCRNIVIEGNFAKFSQNEELKKKLLETYPRQLAEANKNDRIWGIGRDWTDPLAKDPSKWLGMNWLGECLMDVR 154
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BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: A0A8J1UA15_OWEFU (Ofus.G112339 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UA15_OWEFU)

HSP 1 Score: 99.0 bits (245), Expect = 6.710e-25
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTG----------DNLWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            I+ SDDPREQK LGR+V +FD  +W S C  ++  G++ KFSQNEE+   L++T           D +WGIGL A +P+A +  +W G+N LG AL  AR
Sbjct:   12 IMESDDPREQKALGRKVSNFDADVWDSNCREVVKQGSIAKFSQNEELKKVLLETDGTILVEASPRDTIWGIGLGADNPKAKNKHTWRGKNWLGYALTDAR 111
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: A0A8B6CD26_MYTGA (NADAR domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CD26_MYTGA)

HSP 1 Score: 102 bits (253), Expect = 1.420e-23
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTG----------DNLWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            ILA  +PRE KRLGRQV++FD   W   C +I++ GN  KF QNE++  T+++T           D +WGIGLSA DPRA + ++W G+NLLG AL   R
Sbjct:  299 ILAEHEPREHKRLGRQVKNFDQNTWDDNCMDIVIRGNKAKFEQNEDLMKTILKTFPKTLAEASPFDTIWGIGLSADDPRALNKETWKGKNLLGHALTKIR 398
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BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: UPI00036309F7 (NADAR family protein n=2 Tax=Micromonosporaceae TaxID=28056 RepID=UPI00036309F7)

HSP 1 Score: 95.5 bits (236), Expect = 9.880e-23
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTG----------DNLWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            IL +  P   K LGRQVR FD A W + C ++++ GN+ KFSQ+ ++   L +TG          D +WGIGLSA DPRA  P  W G+NLLG AL HAR
Sbjct:   84 ILTTPHPGAVKALGRQVRGFDQATWDAHCFDLVVAGNVAKFSQHPDLGRYLSRTGNRVLVEASPVDRVWGIGLSATDPRAHDPARWRGRNLLGFALMHAR 183
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: UPI0015517745 (NADAR family protein n=1 Tax=Prevotella sp. PINT TaxID=2736291 RepID=UPI0015517745)

HSP 1 Score: 94.7 bits (234), Expect = 1.590e-22
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTGDN----------LWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            ILA+DDPRE K+LGR V+ FD  LW  E   ++++GNL KF QN E+   L+ TGD           +WGIGL A +P A +P  W G+NLLG AL   R
Sbjct:   72 ILATDDPREIKKLGRVVKDFDARLWDMEKSQVVVNGNLHKFGQNPELRDFLLSTGDKVLVEASPYDKIWGIGLDANNPDACAPKLWKGENLLGFALMEVR 171
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: A0A1Y0I883_9GAMM (Putative ABC transporter periplasmic component n=1 Tax=Oleiphilus messinensis TaxID=141451 RepID=A0A1Y0I883_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 3.260e-22
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTG----------DNLWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            I  +  P E KRLGR+V  FD A+W +E  N+++ GN+ KFSQ+ E+   L+ TG          D +WGIGL+A DP ASSPD W G NLLG AL   R
Sbjct:   76 IFKAKTPGEAKRLGREVNGFDEAIWTAERFNLVVAGNMAKFSQHPELLSYLLGTGERVLVEASPLDKIWGIGLAADDPLASSPDVWPGLNLLGYALMEVR 175
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: A0A4S1ZE27_9BACT (NADAR family protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A4S1ZE27_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 7.400e-22
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTGDN----------LWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            ILA+DDPRE K+LGR VR FD  LW  +   ++++GNL KF QN ++   L+ TGD           +WGIGL A +P A  P  W G+NLLG AL   R
Sbjct:   66 ILATDDPREIKKLGRMVRDFDARLWDMKKSQVVVNGNLHKFGQNPKLRDFLLSTGDKVLVEASPYDKIWGIGLEAKNPDACDPRLWKGENLLGFALMEVR 165
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: UPI000627472B (NADAR family protein n=1 Tax=Micromonospora sp. HK10 TaxID=1538294 RepID=UPI000627472B)

HSP 1 Score: 93.2 bits (230), Expect = 1.210e-21
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTGDN----------LWGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            +LA+D P   K LGRQVR FD A W +   +I+L G++ KF Q+EE+   L+ TGD           +WGIGL+A DPR + P SW G NLLG AL  AR
Sbjct:   89 VLAADHPGRAKALGRQVRGFDEATWAARRYDIVLAGSVAKFGQHEELRRYLLGTGDRVLVEASPLDRIWGIGLTADDPRTADPASWRGDNLLGFALMAAR 188
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: A0A2I2KQ41_9ACTN (NADAR domain-containing protein n=1 Tax=Frankia canadensis TaxID=1836972 RepID=A0A2I2KQ41_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-21
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTGDNL----------WGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            ILA+ DP   K LGR+VR FD A+W+     I++ GNL KF+QN+ +   L+ TGD++          WGIGLSA DPRA+ P  W G NLLG AL   R
Sbjct:   97 ILAAPDPGRAKALGRRVRGFDEAIWERHRYEIVVAGNLAKFAQNDRLRGFLLATGDDVLVEASPLDAVWGIGLSAGDPRATRPADWPGLNLLGFALMDVR 196
[Close]
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Match: A0A385ASJ9_9ACTN (GTP cyclohydrolase II n=5 Tax=Micromonospora TaxID=1873 RepID=A0A385ASJ9_9ACTN)

HSP 1 Score: 92.4 bits (228), Expect = 1.460e-21
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLTLIQTGDNL----------WGIGLSACDPRASSPDSWCGQNLLGQALEHAR 270
            +LA+  P   K LGRQVR FD A W +    I++ G++ KFSQ+E +   L+ TGD +          WGIGL+A DPRA+ P++W G NLLG AL  AR
Sbjct:   79 VLAAGHPHRAKALGRQVRDFDEATWVARRYEIVVAGSVAKFSQHETLRRFLLGTGDRVLVEASPTDRVWGIGLTAADPRAADPETWRGDNLLGFALMEAR 178
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1492.3393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B6FNU1_MYTGA1.610e-2647.00NADAR domain-containing protein n=1 Tax=Mytilus ga... [more]
A0A8J1UA15_OWEFU6.710e-2546.00Ofus.G112339 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A8B6CD26_MYTGA1.420e-2348.00NADAR domain-containing protein n=1 Tax=Mytilus ga... [more]
UPI00036309F79.880e-2348.00NADAR family protein n=2 Tax=Micromonosporaceae Ta... [more]
UPI00155177451.590e-2248.00NADAR family protein n=1 Tax=Prevotella sp. PINT T... [more]
A0A1Y0I883_9GAMM3.260e-2248.00Putative ABC transporter periplasmic component n=1... [more]
A0A4S1ZE27_9BACT7.400e-2247.00NADAR family protein n=1 Tax=Bacteroidales bacteri... [more]
UPI000627472B1.210e-2148.00NADAR family protein n=1 Tax=Micromonospora sp. HK... [more]
A0A2I2KQ41_9ACTN1.460e-2148.00NADAR domain-containing protein n=1 Tax=Frankia ca... [more]
A0A385ASJ9_9ACTN1.460e-2146.00GTP cyclohydrolase II n=5 Tax=Micromonospora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1492contigF-serratus_M_contig1492:216519..216791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.5
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog688245.CtCNB1_1735
Preferred nameybiA
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs1RCXE@1224,2VRRD@28216,4AE7G@80864,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelComamonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929471.6017904-CDS-F-serratus_M_contig1492:216518..2167911622929471.6017904-CDS-F-serratus_M_contig1492:216518..216791Fucus serratus maleCDSF-serratus_M_contig1492 216519..216791 -
1690962868.644165-CDS-F-serratus_M_contig1492:216518..2167911690962868.644165-CDS-F-serratus_M_contig1492:216518..216791Fucus serratus maleCDSF-serratus_M_contig1492 216519..216791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1492.3393.1prot_F-serratus_M_contig1492.3393.1Fucus serratus malepolypeptideF-serratus_M_contig1492 216519..216791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1492.3393.1

>prot_F-serratus_M_contig1492.3393.1 ID=prot_F-serratus_M_contig1492.3393.1|Name=mRNA_F-serratus_M_contig1492.3393.1|organism=Fucus serratus male|type=polypeptide|length=91bp
ILASDDPREQKRLGRQVRHFDHALWQSECENIILHGNLGKFSQNEEMPLT
LIQTGDNLWGIGLSACDPRASSPDSWCGQNLLGQALEHAR*
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mRNA from alignment at F-serratus_M_contig1492:216519..216791-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1492.3393.1 ID=mRNA_F-serratus_M_contig1492.3393.1|Name=mRNA_F-serratus_M_contig1492.3393.1|organism=Fucus serratus male|type=mRNA|length=273bp|location=Sequence derived from alignment at F-serratus_M_contig1492:216519..216791- (Fucus serratus male)
ATCCTTGCTTCAGACGACCCCCGAGAGCAAAAACGCCTCGGCCGTCAAGT
GCGTCACTTTGACCACGCGCTATGGCAATCCGAATGCGAAAACATTATAC
TACATGGCAACCTTGGGAAATTTTCCCAAAACGAGGAGATGCCGCTTACC
CTTATTCAAACCGGCGACAATCTGTGGGGTATCGGTCTGAGCGCTTGCGA
CCCGCGCGCCTCTTCCCCTGATTCCTGGTGCGGTCAAAATCTGCTAGGTC
AGGCCTTAGAGCACGCCCGATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1492:216519..216791-

>mRNA_F-serratus_M_contig1492.3393.1 ID=mRNA_F-serratus_M_contig1492.3393.1|Name=mRNA_F-serratus_M_contig1492.3393.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig1492:216519..216791- (Fucus serratus male)
ATCCTTGCTTCAGACGACCCCCGAGAGCAAAAACGCCTCGGCCGTCAAGT
GCGTCACTTTGACCACGCGCTATGGCAATCCGAATGCGAAAACATTATAC
TACATGGCAACCTTGGGAAATTTTCCCAAAACGAGGAGATGCCGCTTACC
CTTATTCAAACCGGCGACAATCTGTGGGGTATCGGTCTGAGCGCTTGCGA
CCCGCGCGCCTCTTCCCCTGATTCCTGGTGCGGTCAAAATCTGCTAGGTC
AGGCCTTAGAGCACGCCCGATAAATCCTTGCTTCAGACGACCCCCGAGAG
CAAAAACGCCTCGGCCGTCAAGTGCGTCACTTTGACCACGCGCTATGGCA
ATCCGAATGCGAAAACATTATACTACATGGCAACCTTGGGAAATTTTCCC
AAAACGAGGAGATGCCGCTTACCCTTATTCAAACCGGCGACAATCTGTGG
GGTATCGGTCTGAGCGCTTGCGACCCGCGCGCCTCTTCCCCTGATTCCTG
GTGCGGTCAAAATCTGCTAGGTCAGGCCTTAGAGCACGCCCGATAA
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