mRNA_F-serratus_M_contig1492.3391.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1492.3391.1 vs. uniprot
Match: D7G4U3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U3_ECTSI) HSP 1 Score: 122 bits (307), Expect = 2.430e-28 Identity = 71/206 (34.47%), Postives = 101/206 (49.03%), Query Frame = 3
Query: 255 MGMITSNTRNGAIVSEIRSWPKFQERTCLASSDISLLAAAFLKALGSSENDTLKREQFEAWMDFSSAPTPVERRLFDAFCISEADQQVDLFNFVVGIWNYCLEGKSILALLAFDIYDLHASGTITEADLKTMIVDMWGMDWEEDDNVKALMEKRKGEDAMKIDKWNEFCRVHPRVLQPSFKLQQEMQELTLGRKRWAKISERVRKR 872
MG SNTR V+EI+ WP F ER C+ SSD+S +A AF KA SSE L+R FE W+D S P PVE RLF+ F I+ +QQ D + L+ +R G D M+ +W +FCR +P +L P +KLQ+ +Q++T+G+KRWAK++E+++ R
Sbjct: 1 MGATPSNTRQKEFVAEIQGWPGFVERMCMTSSDVSGIATAFRKATESSEGKYLQRADFEHWLDMGSKPKPVEERLFEVFIINSGEQQDDAL-------------------------------------------------------ARGLLAERVGVDPMQPTEWKDFCRSYPNLLHPIYKLQRTLQDMTIGKKRWAKLNEKMKLR 151
BLAST of mRNA_F-serratus_M_contig1492.3391.1 vs. uniprot
Match: A0A225WT84_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WT84_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 5.540e-13 Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = 3
Query: 513 QVDLFNFVVGIWNYCLEGKSILALLAFDIYDLHASGTITEADLKTMIVDMWGMDWEEDDNVKALMEKRKG------EDAMKIDKWNEFCRVHPRVLQPSFKLQQEMQELTLGRKRWAKISE 857
+VD FV+ +WNYC + L AFD+YD+ SG I +++ + ++WG WE + N +++K + + + EF HP +L P+F+LQ E+Q LG++ WA+ +E
Sbjct: 8 EVDFIEFVLAVWNYCSFNHASLVRFAFDLYDIDGSGEIEHDEIERCVREVWGAGWEVNSNAHKIVDKLDAIMANTTNNRLSATLFQEFAVRHPMLLFPAFELQMEIQRKVLGKRFWARATE 128
BLAST of mRNA_F-serratus_M_contig1492.3391.1 vs. uniprot
Match: D7FW22_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW22_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 2.190e-7 Identity = 37/126 (29.37%), Postives = 63/126 (50.00%), Query Frame = 3
Query: 474 RLFDAFCISEADQQVDLFNFVVGIWNYCLEGKSILALLAFDIYDLHASGTITEADLKTMIVDMWGMDWEEDDNVKALM-------EKRKGEDAMKIDKWNEFCRVHPRVLQPSFKLQQEMQELTLG 830
RLF F + D ++ VVG+W YC + + L FD+ D+ +G I + MIVD++G +WE++D KA+ + G M +D W+ F +P++ P+ + +Q+ LG
Sbjct: 28 RLFRCFD-EDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEFNFMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMDMDAWSAFVSANPQIQAPAVHTRLVLQKKVLG 152 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1492.3391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1492.3391.1 >prot_F-serratus_M_contig1492.3391.1 ID=prot_F-serratus_M_contig1492.3391.1|Name=mRNA_F-serratus_M_contig1492.3391.1|organism=Fucus serratus male|type=polypeptide|length=529bp MGMITSNTRNGAIVSEIRSWPKFQERTCLASSDISLLAAAFLKALGSSENback to top mRNA from alignment at F-serratus_M_contig1492:145725..163760- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1492.3391.1 ID=mRNA_F-serratus_M_contig1492.3391.1|Name=mRNA_F-serratus_M_contig1492.3391.1|organism=Fucus serratus male|type=mRNA|length=18036bp|location=Sequence derived from alignment at F-serratus_M_contig1492:145725..163760- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1492:145725..163760- >mRNA_F-serratus_M_contig1492.3391.1 ID=mRNA_F-serratus_M_contig1492.3391.1|Name=mRNA_F-serratus_M_contig1492.3391.1|organism=Fucus serratus male|type=CDS|length=3174bp|location=Sequence derived from alignment at F-serratus_M_contig1492:145725..163760- (Fucus serratus male)back to top |