mRNA_F-serratus_M_contig1492.3388.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: D7G4V8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V8_ECTSI) HSP 1 Score: 318 bits (814), Expect = 6.530e-89 Identity = 367/858 (42.77%), Postives = 456/858 (53.15%), Query Frame = 3
Query: 18 PKGGVEVRELGEGGIVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEGPLASMSGLRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGFDSLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDDCQCIFSVGSLLELSLDGNPVAVQNGAGSRYRQFILQRLPSLHHLDLKRVRNDDQSFSSPSQPATATSWTTCKNSSSDTKTITNEATLPGLKNIHENRRIKDDHGSNTSPRRVIERTTHVCAMKEGRRWSSEGTMGND---DARQYQCGTGAWMVTPRA---PGGTSGTSSYFSP----------CRDGKRNSGL-----------PEERCKQTGGVPAGH--EKIRQDEIYAGCTQVPF--ATIRCAGMESVGITGN---LAIKESEAVSAKVSQAGREDRETIALKERGGAIDAARKCWERRKKCSGASGTRRQTRHSSSAGTCTCPGGSNRCNHRTLPTTISNSTIPHNQSDLHPAFSSTCS--FVPP--------------DRRGFSTSKSEGVSGGSSANTTGTDLSTRNGRRSKDQDRSVSVAPGGMGYFELEQRVPEDRVRLEAACALEPGV-------TLTVYGNVWRWLSDEKVCLLKEKVFEVQFLYVHVDSVARKAAAIAQTFLNLTSLRLLDNDIRSFKQLEQLRPLVANLLLLDLGHNPVATSASEVARQAWVQAQGPRLRLATASH-------------ERIHVGPEEQ---LERWNCSSHEHLRSEGSNQALPPPLVERDTLLPHEATSGSKNAEISSGSRYSVPA 2372
P+GGVEVRE G ++VRRSE K+R PERL+LHRR L SCP+I+GD++LRLL+YQNNLI ITNLANLPNLIF+DLYNN+I+TLEGPL++M+ LRV+ XXXXXXXXXXXXXXXXXX G D LQ+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GNPVA QNG GS YR +ILQ LP+LHHLDLKRV + QS S TT S+ D + + G N + G++ R T+ G S+ GT N+ D G G+ RA PG SS SP R G GL P++ + G G E++ Q + AG + ++ R A E V GN A + EAV+ K ++ R++RE ALKER AI+AAR+CWERR G S T R SS T T ++R + ++S + +PA SS VPP R S+S + G A T G GRRS + R S++ GG+GYFELEQR+ +R+ + A GV TL VYG+VWRWL D KVC L+E+V E +F VHV SVARKA+ IAQTF NL+ L+LLDNDIRS +QLE+LRP++ NL L LG NPV +ASE A +AWV+ QGP + L + H R + ++Q L + S ++ PPL T P T GS NA+ GS VP+
Sbjct: 74 PEGGVEVREFQGGVLLVRRSEDAKKRSPERLNLHRRWLTSCPIIQGDNRLRLLNYQNNLITKITNLANLPNLIFIDLYNNVIDTLEGPLSTMTALRVMMVGKNKIQKISNLXXXXXXXXXXXXXXXXXXMVGLDGLQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY-------------------------GNPVAGQNGLGSSYRSYILQHLPNLHHLDLKRVTDHGQSISHQGSDGNLAPPTTRTASADDAR-----ESRGGGNNGRSRTAFHEAMGNSGKGSRKPSGTSRTG----GNGVSTSGTNRNERSNDGFPVLLGQGSADTQSRAEHHPG-----SSLSSPQXXXXXXXXXSRGGDDPRGLHRAGPVMSAPAPDKGAIGSDGRVRGGAWEQLSQQTMAAGECAITGGDSSTRAARKEVVLAVGNGMSRAAEAREAVALKRAKTDRDEREKTALKERREAIEAARECWERR---GGGSITSRARHRSSRDSTSTGKDNTSRKTSAHVKPPPASSPSCSAPTGPNPADSSNTGGGAVPPRPEPPXXXXRSPTXXXRRTSSSANTGSEVAGVARTGG----GVGGRRSGNAGRRGSIS-GGVGYFELEQRLRHNRMGVGDVAASGGGVPGGAGGITLKVYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLERLRPMLTNLTALHLGKNPVTRNASEAALRAWVKGQGPCVSLVSPGHGPASDGRSICTGDRRQYTQQQQQHCPLTNASASQQQYSPPSTPTTQATPPLPAAPTPHPPCGT-GSNNAKPLGGSDVGVPS 883
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A6H5JFV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV0_9PHAE) HSP 1 Score: 312 bits (799), Expect = 1.310e-86 Identity = 326/891 (36.59%), Postives = 410/891 (46.02%), Query Frame = 3
Query: 18 PKGGVEVRELGEGGIVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEGPLASMSGLRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGFDSLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDDCQCIFSVG-------------------SLLELSLDGNPVAVQNGAGSRYRQFILQRLPSLHHLDLKRVRNDDQSFS--------SPSQPATATS------------------------------------WTTCKNSSSDTKTITNEATLPGLKNIHENRRIKDDHGS-NTSPRRVIERTTHVCAMKEGRRWSSEGTMGNDDARQYQCGTGAWMVTPRAPGGTSGTSSYFSPCRDGKRNSGLPEERCKQTGGVPAGHEKIRQDEIYAGCTQVPFATIRCAGMESVGITGNLAIKESEAVSAKVSQAGREDRETIALKERGGAIDAARK--CWERRKKCSGASGTR-RQTRHSSSAGTCTCPGGSNRCNHRTLPTTISNSTIPHNQSDLHPAFSSTC----------------SFVPPDRRGFSTSKSEGVSGGSSANTTGTDLSTRNGRRSKDQDRSVSVAPGGMGYFELEQRVPEDRVRLEAACALEPGV-------TLTVYGNVWRWLSDEKVCLLKEKVFEVQFLYVHVDSVARKAAAIAQTFLNLTSLRLLDNDIRSFKQLEQLRPLVANLLLLDLGHNPVATSASEVARQAWVQAQGPRLRLATASH-------------ERIHVGPEEQLERWNC---SSHEHLRSEGSNQALPPPLVERDTLLPHEATSGSKNAEISSGSRYSVPA 2372
P+GGVEVRE G ++VRRSE K+R PERL+LHRR+L SCP+I+GD++LRLL+YQNNLI ITNLANLPNLIF+DLYNN+I TLEGPL++M+ LRV+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX G D LQ+ + C+ ++ SL+ELSL GNPVAVQNG GS YR +ILQ LP LHHLDLKRV + QS S +PS TA++ W T N S + T +NE + G + HGS +T R + + G DD R G M P G G+ DG G E+ + AG I + G + +VG + A + EAV+ K ++ RE+ E ALKER AI+AAR+ CWERR S S R R R S++AG S + + P S S PP RR S + + G + G GRRS+D R S++ GG+GYFELEQR+ + + A GV TL VYG+VWRWL D KVC L+E+V E +F VHV SVARKA+ IAQTF NL+ L+LLDNDIRS +QLE LRP++ NL L LG NPV SASE A +AWV+ QGP + L + H R+H ++Q N H S + QA PP L T P T G+ N + G VP+
Sbjct: 74 PEGGVEVREFHGGVLLVRRSEDAKKRSPERLNLHRRRLTSCPIIQGDNRLRLLNYQNNLISKITNLANLPNLIFIDLYNNVINTLEGPLSTMTALRVMMVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGGLDGLQDLRVLNLAGNEIKSFLPRSVWRRRYYFPNVMIEGNIDRSNQLDQCLPFRVVK--------NVSCLTALTELNLRRNNVEKPLTPQTSRSLMELSLFGNPVAVQNGLGSSYRSYILQHLPKLHHLDLKRVTDHGQSISHQYSDGNMAPSTTRTASADDARESRGGGNNGRSRTAFHETMGNSGKGSRKPSGAWRTGGNGFSTSGTNSNEGSNDGFP-------VLLTHGSADTQSRGEHHSGSXXXXXXXXXXXXXXXSQGGDDPRGLHR-AGPVMSAPAPDKGAIGS--------DGMVRGGAWEQVTVFVQTMGAGECGITAGDSSRGAARKQVVL-------AVGTGMSRAAEAREAVTLKRAKTDREEWEKTALKERREAIEAARRAECWERRGGGSITSRARHRNPRDSTTAGK---DSTSRKTSAHVKPPPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPTPPSRRTSSLANTGSEVAGVTRTVGGV-----GGRRSRDTGRRGSIS-GGVGYFELEQRLRHKSMGVGDVAASGGGVPSGAGGITLKVYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLEHLRPMLTNLTALYLGKNPVTRSASEAALRAWVKGQGPCVSLVSPGHGPASDGRNVCTGDRRLHTQQQQQSPLTNAFAGQQHSSPPSTPTTQAAPP-LPAAPTPHPPCGT-GTNNVKPLGGGDMGVPS 922
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A4Q3SRM7_9BACT (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4Q3SRM7_9BACT) HSP 1 Score: 119 bits (298), Expect = 7.340e-25 Identity = 161/234 (68.80%), Postives = 180/234 (76.92%), Query Frame = 3
Query: 45 LGEGGIVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEGPLASMSGLRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGFDSLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDDCQCIFSVGSLLELSLDGNPVAVQNGAGSRYRQFILQRLPSLHHLD 746
L +VV R+ E+ R PERL+L RRQL+ CPL+E + +LRLL+YQNN IK ITNL NLPNLIFLDLYNN I TLEGPL + GL XXXXXXXXXXXXXXXXXXXXXXXXXXXXX EG + L + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + D QCIF++ SL+ELSLD NP+ + GAG YR +L L SL HLD
Sbjct: 165 LSPDTLVVFRTAEERLRNPERLNLDRRQLEFCPLLEQEQRLRLLNYQNNNIKYITNLENLPNLIFLDLYNNKIITLEGPLCQVRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVIEGLEGLSDLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHNFIQAYVDIQCIFNIQSLIELSLDNNPLVEKEGAG--YRYTVLAYLSSLKHLD 396
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A8J2SSU8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSU8_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.220e-17 Identity = 129/240 (53.75%), Postives = 160/240 (66.67%), Query Frame = 3
Query: 54 GGIVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEGPLASMSGLRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGFDSLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDDCQCIFSVGSLLELSLDGNPVAVQNGAGSRYRQFILQRLPSLHHLDLKRVRNDDQ 773
G +VV RS E+ PERL+L RR+L CP+++ + Q+RLL+YQ+N IK I NL +LPNLIFLDLYNN IE L L + LRV+ XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FD C+F + L+ELS+DGNP+A+Q+ + YR++++++ L LDLKRV + ++
Sbjct: 199 GALVVYRSPEERAANPERLNLDRRRLTVCPILKSEEQVRLLNYQSNYIKEIQNLVHLPNLIFLDLYNNRIENLSHDLGCVPTLRVLMLGKNRIRAISHLDKLVKLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLSNNCIQSFDSIVCVFGIRCLMELSMDGNPIALQDP--TTYRRYVIEQAKKLRLLDLKRVTDAER 436
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: F0YI54_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI54_AURAN) HSP 1 Score: 98.2 bits (243), Expect = 4.190e-17 Identity = 131/238 (55.04%), Postives = 162/238 (68.07%), Query Frame = 3
Query: 60 IVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEGPLASMSGLRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGFDSLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDDCQCIFSVGSLLELSLDGNPVAVQNGAGSRYRQFILQRLPSLHHLDLKRVRNDDQ 773
+VV RS E+ PERL+L RR L CP+++ + ++RLL+YQNN I+ I +L++LPNLIFLDLYNN IE+L L + LRV+ XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FD C+F V L+ELS+DGNP+A+Q+ YR+F ++R+ +L HLDLKRV + ++
Sbjct: 308 LVVYRSPEERAANPERLNLDRRHLTVCPILKSEERVRLLNYQNNYIEEIRHLSHLPNLIFLDLYNNCIESLSRDLECVPTLRVLMLGKNRIKAISHLEKLGKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFLSNNRVQSFDAVACLFDVRFLMELSMDGNPIALQDPHA--YRRFAVERVKTLRHLDLKRVTDAER 543
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A7S2F339_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F339_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.180e-13 Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 3
Query: 63 VVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEGPLASMSGLRVV 311
VV RS E+ PERL+L RR L CP+++ + ++RLL+YQNN I+ I L NLPNLIFLDLYNN IE + L+ + LRV+
Sbjct: 16 VVFRSNSERTNDPERLTLERRGLVCCPVLKLEDRVRLLNYQNNFIERIDALRNLPNLIFLDLYNNCIEEMSDELSFVPTLRVL 98
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A7S4EZI9_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZI9_CHRCT) HSP 1 Score: 82.4 bits (202), Expect = 2.040e-12 Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 3
Query: 54 GGI-VVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEG 278
GG+ V RS EK PERL+L RR L++CP++EG+ +LRLL+YQNN I +I+NL NLP+LIFLD+Y+N I+ + G
Sbjct: 192 GGVPTVLRSTAEKLANPERLNLDRRSLEACPVLEGEERLRLLNYQNNSISSISNLHNLPHLIFLDMYSNQIKEIAG 267
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A1R2CZ17_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CZ17_9CILI) HSP 1 Score: 82.0 bits (201), Expect = 3.140e-12 Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query: 54 GGIVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLEG 278
G +VV RS E+ PERL+L RR L PL+EG+ +LRLL+YQ+NLI I NL +LPNLIFLDLYNN I + G
Sbjct: 98 GVLVVYRSPSERNTNPERLNLDRRDLTQMPLLEGEERLRLLNYQHNLISKIENLLSLPNLIFLDLYNNQIREING 172
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A7S4N260_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N260_GUITH) HSP 1 Score: 78.6 bits (192), Expect = 4.500e-11 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 3
Query: 6 LSSRPKGGVEVRELGEGG-IVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLD 245
+ + P V V GG +V+ RS+ EK PERL+L RR+L CP++EG+ +LRLL+YQNNLI + NL NLPNLIFLD
Sbjct: 195 VQATPSATVNVSGNSNGGQLVINRSKEEKFSNPERLNLDRRKLTCCPVLEGEEKLRLLNYQNNLISKVENLDNLPNLIFLD 275
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Match: A0A1R2C674_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C674_9CILI) HSP 1 Score: 77.8 bits (190), Expect = 6.650e-11 Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 3
Query: 54 GGIVVRRSELEKRRCPERLSLHRRQLKSCPLIEGDSQLRLLSYQNNLIKTITNLANLPNLIFLDLYNNLIETLE 275
G +VV R E+ PERL+L RR+L PL+EG+ +LRLL+YQ+N I I NL +LPNLIFLDLYNN I+ +
Sbjct: 103 GVLVVYRKPSERNSNPERLNLDRRELTQMPLLEGEERLRLLNYQHNFISKIENLLSLPNLIFLDLYNNQIKEIN 176 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1492.3388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1492.3388.1 >prot_F-serratus_M_contig1492.3388.1 ID=prot_F-serratus_M_contig1492.3388.1|Name=mRNA_F-serratus_M_contig1492.3388.1|organism=Fucus serratus male|type=polypeptide|length=897bp MSGLRVVMVGKNKIEKISNLESLRKLDVLDLHSNGIRDMEGFDSLQELRVback to top mRNA from alignment at F-serratus_M_contig1492:108582..114416+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1492.3388.1 ID=mRNA_F-serratus_M_contig1492.3388.1|Name=mRNA_F-serratus_M_contig1492.3388.1|organism=Fucus serratus male|type=mRNA|length=5835bp|location=Sequence derived from alignment at F-serratus_M_contig1492:108582..114416+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1492:108582..114416+ >mRNA_F-serratus_M_contig1492.3388.1 ID=mRNA_F-serratus_M_contig1492.3388.1|Name=mRNA_F-serratus_M_contig1492.3388.1|organism=Fucus serratus male|type=CDS|length=5382bp|location=Sequence derived from alignment at F-serratus_M_contig1492:108582..114416+ (Fucus serratus male)back to top |