mRNA_F-serratus_M_contig149.3363.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig149.3363.1
Unique NamemRNA_F-serratus_M_contig149.3363.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig149.3363.1 vs. uniprot
Match: D8LQ50_ECTSI (Myotubularin phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ50_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.570e-34
Identity = 78/150 (52.00%), Postives = 98/150 (65.33%), Query Frame = 2 
Query:   71 TFRGGKEAGGEAGDRDRDPELCVLDARTAVSALGNQLVGKGVETGAGYGSSIQLVFSGIGNIHAVKDAFEEMRNSFDPLKTETE--------TRSIMDKTSLSLRLTKGLDLKQVLGE-----DLEDVVSCNQWSRLLRQILAAGVLVGE 481
            T  GGK  G E     + P LC+LDARTAV+ALGN+LVGKG+ETGAGYG+S QLVFSGIGN+HAVKDAFEE+R+S DP+K E++         + +  K S SL   + +DLK  LG+     +LE+      W RLLRQIL A +L   
Sbjct:  511 TAAGGK--GSETPGSGKAPRLCLLDARTAVAALGNKLVGKGIETGAGYGNSTQLVFSGIGNVHAVKDAFEELRDSLDPVKVESKMDRWKEDSAKMVAKKMSRSLGFARMMDLKYALGDQLGGDELEETPPYTLWPRLLRQILGASLLAAR 658
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BLAST of mRNA_F-serratus_M_contig149.3363.1 vs. uniprot
Match: A0A6H5KY31_9PHAE (Myotubularin phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY31_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.890e-33
Identity = 77/150 (51.33%), Postives = 98/150 (65.33%), Query Frame = 2 
Query:   71 TFRGGKEAGGEAGDRDRDPELCVLDARTAVSALGNQLVGKGVETGAGYGSSIQLVFSGIGNIHAVKDAFEEMRNSFDPLKTETE--------TRSIMDKTSLSLRLTKGLDLKQVLGE-----DLEDVVSCNQWSRLLRQILAAGVLVGE 481
            T  GGK  G E     + P LC+LDARTAV+ALGN+LVGKG+ETGAGYG+S QLVFSGIGN+HAVKDAFEE+R+S DP+K E++         + +  K S SL   + +DLK  LG+     +LE+      W RLL+QIL A +L   
Sbjct:  488 TAAGGK--GIEKPGSGKAPRLCLLDARTAVAALGNKLVGKGIETGAGYGNSTQLVFSGIGNVHAVKDAFEELRDSLDPVKVESKMDRWKEDSAKMVAKKMSRSLGFARMMDLKYALGDQLGGDELEETPPYTLWPRLLKQILGASLLAAR 635
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig149.3363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ50_ECTSI1.570e-3452.00Myotubularin phosphatase domain-containing protein... [more]
A0A6H5KY31_9PHAE1.890e-3351.33Myotubularin phosphatase domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig149contigF-serratus_M_contig149:591673..592629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue3.1e-30
Seed eggNOG ortholog2880.D8LQ50
KEGG rclassRC00078
KEGG koko:K01108
KEGG ReactionR03330,R03363,R06875
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
EggNOG OGsKOG4471@1,KOG4471@2759
EC3.1.3.64,3.1.3.95
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons3
Model size532
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig149.3363.1prot_F-serratus_M_contig149.3363.1Fucus serratus malepolypeptideF-serratus_M_contig149 591685..592568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.7538831-UTR-F-serratus_M_contig149:591672..5916841622929465.7538831-UTR-F-serratus_M_contig149:591672..591684Fucus serratus maleUTRF-serratus_M_contig149 591673..591684 -
1690962865.774854-UTR-F-serratus_M_contig149:591672..5916841690962865.774854-UTR-F-serratus_M_contig149:591672..591684Fucus serratus maleUTRF-serratus_M_contig149 591673..591684 -
1622929465.8059776-UTR-F-serratus_M_contig149:592568..5926291622929465.8059776-UTR-F-serratus_M_contig149:592568..592629Fucus serratus maleUTRF-serratus_M_contig149 592569..592629 -
1690962865.8205419-UTR-F-serratus_M_contig149:592568..5926291690962865.8205419-UTR-F-serratus_M_contig149:592568..592629Fucus serratus maleUTRF-serratus_M_contig149 592569..592629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.7683485-CDS-F-serratus_M_contig149:591684..5918581622929465.7683485-CDS-F-serratus_M_contig149:591684..591858Fucus serratus maleCDSF-serratus_M_contig149 591685..591858 -
1690962865.7868035-CDS-F-serratus_M_contig149:591684..5918581690962865.7868035-CDS-F-serratus_M_contig149:591684..591858Fucus serratus maleCDSF-serratus_M_contig149 591685..591858 -
1622929465.7785833-CDS-F-serratus_M_contig149:592079..5922151622929465.7785833-CDS-F-serratus_M_contig149:592079..592215Fucus serratus maleCDSF-serratus_M_contig149 592080..592215 -
1690962865.7980764-CDS-F-serratus_M_contig149:592079..5922151690962865.7980764-CDS-F-serratus_M_contig149:592079..592215Fucus serratus maleCDSF-serratus_M_contig149 592080..592215 -
1622929465.7901733-CDS-F-serratus_M_contig149:592419..5925681622929465.7901733-CDS-F-serratus_M_contig149:592419..592568Fucus serratus maleCDSF-serratus_M_contig149 592420..592568 -
1690962865.8100533-CDS-F-serratus_M_contig149:592419..5925681690962865.8100533-CDS-F-serratus_M_contig149:592419..592568Fucus serratus maleCDSF-serratus_M_contig149 592420..592568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig149.3363.1

>prot_F-serratus_M_contig149.3363.1 ID=prot_F-serratus_M_contig149.3363.1|Name=mRNA_F-serratus_M_contig149.3363.1|organism=Fucus serratus male|type=polypeptide|length=153bp
MSTTFRGGKEAGGEAGDRDRDPELCVLDARTAVSALGNQLVGKGVETGAG
YGSSIQLVFSGIGNIHAVKDAFEEMRNSFDPLKTETETRSIMDKTSLSLR
LTKGLDLKQVLGEDLEDVVSCNQWSRLLRQILAAGVLVGEAAVHSVWYDS
GG*
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mRNA from alignment at F-serratus_M_contig149:591673..592629-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig149.3363.1 ID=mRNA_F-serratus_M_contig149.3363.1|Name=mRNA_F-serratus_M_contig149.3363.1|organism=Fucus serratus male|type=mRNA|length=957bp|location=Sequence derived from alignment at F-serratus_M_contig149:591673..592629- (Fucus serratus male)
GGGTGGGTCGAAGGCGAAGGCCTCGGGGACGAAGCAAGTCACGTGTGGAC
CCAAGCCGTCGATGAGTACAACCTTTAGAGGAGGTAAAGAGGCGGGAGGC
GAGGCCGGGGACAGGGACAGGGACCCTGAGCTGTGCGTGTTGGATGCGAG
GACGGCCGTGTCGGCGCTTGGGAATCAGCTTGTGGGGAAGGGAGTGGAGA
CAGGAGCTGGGTGAGTGACAGCCGTAGGGCTGATTACTCACGTAAGTCTA
GTATTAAGTGAAGCTGCGCATTAGTAAGGTACGCGTGCGGGATGGGTTTC
TTTGTGATGTGGCGTTTCGAGGGAGACGAGTATCCTGGGGTTTGAGGTTA
AGCGTTGAGCCTTGTCATGCTCGGCGATGGTTGAGCTGAAGGACTTAAGC
TTTACACCCGACAGATACGGAAGTTCGATCCAGCTGGTGTTTTCCGGTAT
CGGCAACATCCACGCGGTGAAGGATGCCTTCGAAGAGATGAGGAACTCCT
TCGATCCCCTCAAGACCGAAACGGAAACGAGGTCCATCATGGACAAGACG
GTGAGTTAGGAGGGGTAGCGGGTGCCCGCACGCATTCTTCTAATGTCGCT
ATCGATACGGTTATGATTATCCTAGAAGATTTCGTCAAAGGTTACCAACT
TTTGCCCCAATATTGGGATCCGCAATTGCGTTGGAGCAACGACGTATCCA
ACGACTAGTTGTTAAAGATTCTACAGCAATTTCCCACAACGACCAATGTA
CCTGCCCTCTTCGCCGCGCAGTCTCTCAGCCTTAGACTGACCAAAGGGTT
AGACCTCAAACAGGTGCTAGGCGAGGATCTGGAGGACGTGGTGTCTTGCA
ATCAGTGGTCGCGGCTGCTGCGACAAATCTTGGCCGCTGGCGTGCTGGTG
GGTGAAGCTGCAGTGCACAGTGTATGGTACGATTCGGGAGGGTAGTGTGC
ATTGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig149:591673..592629-

>mRNA_F-serratus_M_contig149.3363.1 ID=mRNA_F-serratus_M_contig149.3363.1|Name=mRNA_F-serratus_M_contig149.3363.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig149:591673..592629- (Fucus serratus male)
ATGAGTACAACCTTTAGAGGAGGTAAAGAGGCGGGAGGCGAGGCCGGGGA
CAGGGACAGGGACCCTGAGCTGTGCGTGTTGGATGCGAGGACGGCCGTGT
CGGCGCTTGGGAATCAGCTTGTGGGGAAGGGAGTGGAGACAGGAGCTGGA
TGAGTACAACCTTTAGAGGAGGTAAAGAGGCGGGAGGCGAGGCCGGGGAC
AGGGACAGGGACCCTGAGCTGTGCGTGTTGGATGCGAGGACGGCCGTGTC
GGCGCTTGGGAATCAGCTTGTGGGGAAGGGAGTGGAGACAGGAGCTGGAT
ACGGAAGTTCGATCCAGCTGGTGTTTTCCGGTATCGGCAACATCCACGCG
GTGAAGGATGCCTTCGAAGAGATGAGGAACTCCTTCGATCCCCTCAAGAC
CGAAACGGAAACGAGGTCCATCATGGACAAGACGATACGGAAGTTCGATC
CAGCTGGTGTTTTCCGGTATCGGCAACATCCACGCGGTGAAGGATGCCTT
CGAAGAGATGAGGAACTCCTTCGATCCCCTCAAGACCGAAACGGAAACGA
GGTCCATCATGGACAAGACGTCTCTCAGCCTTAGACTGACCAAAGGGTTA
GACCTCAAACAGGTGCTAGGCGAGGATCTGGAGGACGTGGTGTCTTGCAA
TCAGTGGTCGCGGCTGCTGCGACAAATCTTGGCCGCTGGCGTGCTGGTGG
GTGAAGCTGCAGTGCACAGTGTATGGTACGATTCGGGAGGGTAGTCTCTC
AGCCTTAGACTGACCAAAGGGTTAGACCTCAAACAGGTGCTAGGCGAGGA
TCTGGAGGACGTGGTGTCTTGCAATCAGTGGTCGCGGCTGCTGCGACAAA
TCTTGGCCGCTGGCGTGCTGGTGGGTGAAGCTGCAGTGCACAGTGTATGG
TACGATTCGGGAGGGTAG
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