mRNA_F-serratus_M_contig149.3362.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig149.3362.1
Unique NamemRNA_F-serratus_M_contig149.3362.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A6H5KY31_9PHAE (Myotubularin phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY31_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.040e-29
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 ARCMGGSNENAQDRENVGGFMGMAMG-----MSSTPDFVGGLVKEYEELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDTD 279
            ARCMGG+NE     E      G  +G     M S  DFVGG V+EY ELSPVF+QFLD+VHNLLAQFPTAFE +E LL FVAEHTFSGL+GTFLCDT+
Sbjct:  693 ARCMGGNNEQEMV-EGAAAATGAELGDDPSAMRSMKDFVGGQVREYAELSPVFLQFLDLVHNLLAQFPTAFEISEGLLTFVAEHTFSGLYGTFLCDTE 789
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: D8LQ50_ECTSI (Myotubularin phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ50_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 5.190e-27
Identity = 62/105 (59.05%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 ARCMGGSNENA------------QDRENVGGFMGMAMGMSSTPDFVGGLVKEYEELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDTD 279
            ARCMGG+NE               D   +G        M S  DFVGG V+EY ELSPVF+QFLD+VHNLLAQFPTAFE +E LL FVAEH FSGL+GTFLCDT+
Sbjct:  716 ARCMGGNNEQEIAEGAXXXXXXXXDAAELGDDRSA---MRSMKDFVGGQVREYAELSPVFLQFLDLVHNLLAQFPTAFEISEGLLTFVAEHAFSGLYGTFLCDTE 817
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A482UHF6_9ARCH (Myotubularin phosphatase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UHF6_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 5.970e-14
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  124 EELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFL 267
            EE SPVFIQFLD VH L+  +P AFE+TEDLLVF+A+H+ S LFG FL
Sbjct:    7 EERSPVFIQFLDCVHQLVYMYPKAFEYTEDLLVFLADHSMSSLFGNFL 54
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A7S2SFP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFP2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.690e-13
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:  106 GLVKEYEELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFL--CDTD 279
            G   E +E SP+F Q+LDVVH +L QFP AFEFTEDLLVF+A+H  S LFGTFL  C+ D
Sbjct:  535 GAATESKEYSPIFRQWLDVVHQVLRQFPQAFEFTEDLLVFLADHAHSCLFGTFLMNCEKD 594
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A7S2G5T4_9STRA (Phosphatidylinositol-3-phosphatase (Fragment) n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G5T4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.340e-13
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:  112 VKEYEELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDTD 279
            VKE +E SP+F+Q+LDV+H + +QFP  FE+   LLVFVA+H FSGLFGTFL +++
Sbjct:  649 VKENQERSPIFVQWLDVIHQIQSQFPDVFEYDSRLLVFVADHLFSGLFGTFLGNSE 704
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A1B6EG19_9HEMI (Protein-tyrosine-phosphatase (Fragment) n=4 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6EG19_9HEMI)

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-12
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:  106 GLVKEYEELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDT 276
            GL ++  E  P+F+Q+LD VHNLL QFP AFE +++ LV +A+HT+S LFGTFLC++
Sbjct:  469 GLTQDINERCPIFLQWLDCVHNLLKQFPCAFEISKNYLVKLAQHTYSNLFGTFLCNS 525
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A2R5GS15_9STRA (Myotubularin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS15_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.760e-12
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  127 ELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDTD 279
            E SP+F+QFLD VHNL+ Q P  FEF E LLVF+AEHT+S  FG FL D+D
Sbjct:  481 EFSPIFVQFLDAVHNLVRQQPDVFEFNERLLVFLAEHTYSARFGNFLHDSD 531
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A8J9UAC2_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UAC2_BRAAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.880e-12
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  115 KEYEELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDT 276
            ++  E  PVF+Q+LD VH LL QFP AFEF++  LV +A+HT+S LFGTFLC+T
Sbjct:  449 EDQNERCPVFLQWLDCVHQLLNQFPCAFEFSQTYLVKLAQHTYSNLFGTFLCNT 502
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BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: A0A5E4M1G8_9HEMI (Protein-tyrosine-phosphatase n=1 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4M1G8_9HEMI)

HSP 1 Score: 68.9 bits (167), Expect = 1.330e-11
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  127 ELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDT 276
            E  PVFIQ+LD VHN++AQ+P AFEF++  LV +A+HT+S LFGTFLC++
Sbjct:  449 ERCPVFIQWLDCVHNVMAQYPCAFEFSKSYLVKLAQHTYSNLFGTFLCNS 498
[Close]
BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Match: UPI001F048F8B (LOW QUALITY PROTEIN: myotubularin-related protein 3-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F048F8B)

HSP 1 Score: 68.6 bits (166), Expect = 1.830e-11
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  118 EYEELSPVFIQFLDVVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDTD 279
            +  E SP+F+QFLD VH LL QFP +FEF E  LV +  HT+S L+GTFLC+T+
Sbjct:  476 DLNERSPIFLQFLDCVHQLLRQFPCSFEFNETFLVKLVHHTYSCLYGTFLCNTE 529
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig149.3362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY31_9PHAE1.040e-2965.31Myotubularin phosphatase domain-containing protein... [more]
D8LQ50_ECTSI5.190e-2759.05Myotubularin phosphatase domain-containing protein... [more]
A0A482UHF6_9ARCH5.970e-1468.75Myotubularin phosphatase domain-containing protein... [more]
A0A7S2SFP2_9STRA1.690e-1363.33Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2G5T4_9STRA4.340e-1358.93Phosphatidylinositol-3-phosphatase (Fragment) n=3 ... [more]
A0A1B6EG19_9HEMI1.100e-1256.14Protein-tyrosine-phosphatase (Fragment) n=4 Tax=Cl... [more]
A0A2R5GS15_9STRA3.760e-1264.71Myotubularin n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
A0A8J9UAC2_BRAAE9.880e-1259.26Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A5E4M1G8_9HEMI1.330e-1162.00Protein-tyrosine-phosphatase n=1 Tax=Cinara cedri ... [more]
UPI001F048F8B1.830e-1157.41LOW QUALITY PROTEIN: myotubularin-related protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig149contigF-serratus_M_contig149:589406..590401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue3.1e-22
Seed eggNOG ortholog2880.D8LQ50
KEGG rclassRC00078
KEGG koko:K01108
KEGG ReactionR03330,R03363,R06875
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
EggNOG OGsKOG4471@1,KOG4471@2759
EC3.1.3.64,3.1.3.95
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons2
Model size279
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig149.3362.1prot_F-serratus_M_contig149.3362.1Fucus serratus malepolypeptideF-serratus_M_contig149 589406..590392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.695222-CDS-F-serratus_M_contig149:589405..5894391622929465.695222-CDS-F-serratus_M_contig149:589405..589439Fucus serratus maleCDSF-serratus_M_contig149 589406..589439 -
1690962865.7419236-CDS-F-serratus_M_contig149:589405..5894391690962865.7419236-CDS-F-serratus_M_contig149:589405..589439Fucus serratus maleCDSF-serratus_M_contig149 589406..589439 -
1622929465.707575-CDS-F-serratus_M_contig149:590156..5903921622929465.707575-CDS-F-serratus_M_contig149:590156..590392Fucus serratus maleCDSF-serratus_M_contig149 590157..590392 -
1690962865.7576642-CDS-F-serratus_M_contig149:590156..5903921690962865.7576642-CDS-F-serratus_M_contig149:590156..590392Fucus serratus maleCDSF-serratus_M_contig149 590157..590392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.719551-UTR-F-serratus_M_contig149:590392..5904011622929465.719551-UTR-F-serratus_M_contig149:590392..590401Fucus serratus maleUTRF-serratus_M_contig149 590393..590401 -
1690962865.7656925-UTR-F-serratus_M_contig149:590392..5904011690962865.7656925-UTR-F-serratus_M_contig149:590392..590401Fucus serratus maleUTRF-serratus_M_contig149 590393..590401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig149.3362.1

>prot_F-serratus_M_contig149.3362.1 ID=prot_F-serratus_M_contig149.3362.1|Name=mRNA_F-serratus_M_contig149.3362.1|organism=Fucus serratus male|type=polypeptide|length=90bp
MGGSNENAQDRENVGGFMGMAMGMSSTPDFVGGLVKEYEELSPVFIQFLD
VVHNLLAQFPTAFEFTEDLLVFVAEHTFSGLFGTFLCDTD
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mRNA from alignment at F-serratus_M_contig149:589406..590401-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig149.3362.1 ID=mRNA_F-serratus_M_contig149.3362.1|Name=mRNA_F-serratus_M_contig149.3362.1|organism=Fucus serratus male|type=mRNA|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig149:589406..590401- (Fucus serratus male)
GCACGCTGCATGGGCGGCAGCAACGAAAACGCCCAGGACCGCGAAAACGT
GGGCGGTTTCATGGGGATGGCGATGGGGATGTCGTCCACGCCGGATTTCG
TCGGCGGGCTCGTGAAGGAGTACGAGGAGCTCAGCCCGGTGTTCATCCAG
TTCCTAGACGTGGTGCACAATCTTTTGGCTCAGTTTCCGACGGCGTTCGA
GTTCACGGAAGACCTCCTCGTTTTTGTGGCAGAGCACACATTCAGGTACC
TGTACAGTAGTATTAATAGTATACAATAGTTGTGTAGTGTAGATATATTG
TATATGATATATGATATGATAGAGAAAGATATGTGCTCGTGTGCCTTAAC
AGTAGTGTATAATTGTAGTGTATAGTAGTATTTAAGTATACAATAGTATT
AATAGTGTACAGTAGTATTGATAGTGTAGTGTAGAGATATTGTATATGAT
GTATACCATGATAAGAGTATGACATGTGTCGATGTGCCCTAACAGTAGTG
TATAGTAGTAGTAATAGTGTAGTGTAGAGATATTGTATATGATATAGTAA
GAGTATGATGTGTGCCTATTGATGACGAGTGTGTCCTGCTCCTGTAAGGG
TCGTTTCTCATTGATGGTCATCGAGCAGATCAACAAAGGGAAAAATCACC
TATTATAAAAAGAAGAGTTGTTTTCAGTTCGACGTACTGTACTGCACTAA
CACCCCAAGAAAACGCTTGTTATAATGCATTCATGTTATTAATAGTCTAG
AGTGTATACTACCTGGTATTGTTTTAATAGACCAGCAAATGTGGAAAGTA
GGTTGTATCGGTGCTACAACATTTCAGCCTACTCCAGTACTTACCAAGCA
CGAAATCACCGTTTATTATGGCATAATACCGTACCAGTACTATTCATCGC
TCCTCTGTACTGTACCCTGTCCACTTTTGTCCGTTGTGCTCGTGGGACCA
TCGTGAACGCAGCGGGCTCTTCGGGACGTTCCTGTGCGACACGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig149:589406..590401-

>mRNA_F-serratus_M_contig149.3362.1 ID=mRNA_F-serratus_M_contig149.3362.1|Name=mRNA_F-serratus_M_contig149.3362.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig149:589406..590401- (Fucus serratus male)
ATGGGCGGCAGCAACGAAAACGCCCAGGACCGCGAAAACGTGGGCGGTTT
CATGGGGATGGCGATGGGGATGTCGTCCACGCCGGATTTCGTCGGCGGGC
TCGTGAAGGAGTACGAGGAGCTCAGCCCGGTGTTCATCCAGTTCCTAGAC
GTGGTGCACAATCTTTTGGCTCAGTTTCCGACGGCGTTCGAGTTCACGGA
AGACCTCCTCGTTTTTGTGGCAGAGCACACATTCAGATGGGCGGCAGCAA
CGAAAACGCCCAGGACCGCGAAAACGTGGGCGGTTTCATGGGGATGGCGA
TGGGGATGTCGTCCACGCCGGATTTCGTCGGCGGGCTCGTGAAGGAGTAC
GAGGAGCTCAGCCCGGTGTTCATCCAGTTCCTAGACGTGGTGCACAATCT
TTTGGCTCAGTTTCCGACGGCGTTCGAGTTCACGGAAGACCTCCTCGTTT
TTGTGGCAGAGCACACATTCAGCGGGCTCTTCGGGACGTTCCTGTGCGAC
ACGGACCGGGCTCTTCGGGACGTTCCTGTGCGACACGGAC
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