mRNA_F-serratus_M_contig1488.3343.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1488.3343.1 vs. uniprot
Match: A0A6H5K3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R7_9PHAE) HSP 1 Score: 342 bits (878), Expect = 1.250e-94 Identity = 352/1028 (34.24%), Postives = 464/1028 (45.14%), Query Frame = 3
Query: 372 EIKRLQGLLEASATSIALLEEAKNKGDLSRENEARLIEELERAKEEIMSLKRKQAMVTQELLGNIKDITAEVDMLRAQLEQMARERDQRVDRSNFEELEKRLSAAMAREEELLSLKKDATTYKMVNMIAKAALKRKLRDKTEALRKLLEGLSKACTETRRTKAKVWNERDLDRARSIPSLGAPSN--GREKQTIPAAVPVGNLSNSTAASGERVAAAATVREGTLPPQGVSGGEAVGDDLPGTPRL---HLSGGEGIPAKDEKAATLERRRAARAAHALAK-KQQKEADAKELDELREACAFPETEGVEFASERLEAVQADVKDQFKAVFVQLKEALEMHKKYVMRSRVEARDTAKTIEMLQAEIDRLRDVLKCTEGELYEKSAVLHQTEEALCHEKNTVADLRRALEAAQKEARDNLYFKEKNASLQKKMDCLEVSSREAKNEAMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAEG---KLYVPKK---KCITT---QVNGCGDPDLGLGKRGSTQTSFHCPELTLRRSNYDGVSAARTPGPGAANVSLLPSSEQDSNYRCYTRRFWASGGPMAGIVCPTVDAWVEAAKIDLYSPGAGSAALLEAQGGGRTQPSHSAKKMMGKKNGRNLTQWYSAPL-------------------------------------AKTWGPSDEG--MGSSADVG------------TPTTAGEAGYRMDEPTPRGDCWWETTLPRRDTRVTSEEQERPHTTCQHQARSSAAATQGYFDGRPEGSPPPRRLHSRIFLQGAGDTSLCFGGKRCLTNGTPPAGVL------RRTKSASMASTLETSPVS-----TEVQQKALEGKGMG--RPKTSSAALLGGGHGWPEDKP------PGEHS-----PNTRIVTVNVPSSVPRREVIDLGILTE-VPRARVWDDQHMAAAAAAAVATGRPATWGPSRGEESPSVSLGGREGDQPVRGGVAVDARLAGLRKTLRKDVFDAAERARLPML 3182
E+K++Q S + LE +GDLS+E+EARLIEEL+ A++EI ++K +QAMVT ELLGNIK AEV+ML+A L M +RD R+D + + S EE SLK++A N A+LK +L + ++AL LLE L KAC ET R KAKVWN RDL+RARSIPS P+ G E V ++ G ++ R + +G SG + V +D G R GG+ A +E KQ EA+ +EL+E + AC P+TEGV A+++L AVQA VK+QFK VF++LKEALE HKK+V+R+RVEAR+ + L+ E+DRLR + + T+ EL +SAVL Q AAQ EARDN YFKEKNA LQ + D E+SSR AK E + ++AE ++ +K +C+T+ QVNG DPDLGLG GSTQT FHCP +TLRRSNY R G + +Y G G VCP VD A++ DLYSPGAGSAALLE QG G S+ + + + +P A+ WG EG G ADV +PT A +G R P DC P T V + Q P R T G GR PPRR+HSR+ LQ A D SL PP G RR AS T +PV+ + V A G+ RP+TS A L G +D PG H ++R + + + VIDLG++++ VP+ VW + +AA GR S S + G D +GGV +DAR A +R+TLR DV DAAERA+LP+L
Sbjct: 688 ELKKMQEETGISVGFDSSLEFTSVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKAALADMTAQRDARMDMGTLVGMGPKKSGVDP--EEFQSLKEEAKLQNKKN----ASLKTELEETSKALLMLLEELRKACKETARAKAKVWNARDLERARSIPSPPKPTRVLGSEHNAAGGGVKGSTATHRPPQRGSDTGGGSS-RSLSSKDRG-SGRDGVANDRKGGGREGEGDRGGGKSRTADEEXXXXXXXXXXXXXXXXXXXXKQLAEAERQELEEFKVACLLPQTEGVALATDKLAAVQASVKEQFKDVFLELKEALEAHKKFVLRTRVEAREVTGKMNALETELDRLRGLHRSTQEELRGRSAVLAQXXXXXXXXXXXXXXXXXXXXAAQAEARDNFYFKEKNAVLQNQWDHAEISSRRAKQECEQVKWELQEQRSTLLHFRKLAEEDERRAKEFVEVEQALKTKVESLAARLKKAEDTAERIEQDRKSRLECLTSTASQVNGYNDPDLGLGTTGSTQTEFHCPPMTLRRSNYQATVLTRAASAGPT---------KGGSYH---------DGATLGFVCPGVDGRAVASERDLYSPGAGSAALLEMQGSGTVDTFSSSAHHLDAHSDSLKQLSFRSPAWAIAGTEVSLSAGEAAISKADSFVSSTQQHRAGGRGEAQNWGLWHEGGGAGGGADVALEGSLETEVERHSPTAA--SGRR---PGTTSDCLPAANTPSTTT-VANRPQTSPSVVFLADMRGGGPETDG---GR---RSPPRRMHSRVLLQSARDHSL-----------PPPCGGAGQQHQQRRQGVASAPGTNRCAPVNISASCSSVPAGATTAPGLASERPRTSYAVLTSSRSGGVQDSSATQGSVPGGHDGFANGQDSRRWQRGLQPN--HQHVIDLGVVSDTVPQPVVWGQRQLAAXXXXXXXXGR-----------SRSAGVAGWWKDGVTKGGVVLDARFAKVRQTLRGDVLDAAERAKLPLL 1653
BLAST of mRNA_F-serratus_M_contig1488.3343.1 vs. uniprot
Match: D7FHT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT3_ECTSI) HSP 1 Score: 147 bits (372), Expect = 2.460e-32 Identity = 143/394 (36.29%), Postives = 186/394 (47.21%), Query Frame = 3
Query: 447 GDLSRENEARLIEELERAKEEIMSLKRKQAMVTQELLGNIKDITAEVDMLRAQLEQMARERDQRVDRSNFEELEKRLSAAMAREEELLSLKKDATTYKMVNMIAKAALKRKLRDKTEALRKLLEGLSKACTETRRTKAKVWNERDLDRARSIPSLGAPSNGREKQTIPAAVPVGNLSNSTAASGERVAAAATVREGTLPPQGVSGGEAVGDDLPGTPRLHLSGGEGIPAKDEKAATLERRRAARAAHALAK--KQQKEADAKELDELREACAFPETEGVEFASERLEAVQADVKDQFKAVFVQLKEALEMHKKYVMRSRVEARDTAKTIEMLQAEIDRLRDVLKCTEGELYEKSAVLHQTEEALCHEKNTVADLRRALEAAQKEARDNLYFKEK 1622
GDLS+E+EARLIEEL+ A++EI ++K +QAMVT ELLGNIK AEV+ML+ L M +RD R+D + + S EE SLK++A K N A+LK +L + ++AL LLE L NGR+ A R+G G E GD GG DE KQ EA+ KEL+E +EAC P+TEGV FA+++L AVQA VK+QFK VF++LKEALE HKK+V+R+RVEAR+ + L+ E+DRLR + T+ EL +SAVL AQ EAR N YFKEK
Sbjct: 703 GDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKVALADMTAQRDARMDMGTLAGMGSKKSGMNP--EEFQSLKEEAKLQKKKN----ASLKTELEETSKALLMLLEELR--------------------------------NGRD-------------------------GGANDRKG-------GGREGEGD----------RGGXKSRTPDEXXXXXXXXXXXXXXXXXXXXXKQLAEAEQKELEEFKEACLLPQTEGVAFAADKLAAVQASVKEQFKDVFLELKEALEAHKKFVLRTRVEAREITGKMNALETELDRLRGLHHSTQEELRGRSAVLAXXXXXXXXXXXXXXXXXXXXXXAQAEARGNYYFKEK 1016 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1488.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1488.3343.1 >prot_F-serratus_M_contig1488.3343.1 ID=prot_F-serratus_M_contig1488.3343.1|Name=mRNA_F-serratus_M_contig1488.3343.1|organism=Fucus serratus male|type=polypeptide|length=892bp MSLKRKQAMVTQELLGNIKDITAEVDMLRAQLEQMARERDQRVDRSNFEEback to top mRNA from alignment at F-serratus_M_contig1488:104599..140019+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1488.3343.1 ID=mRNA_F-serratus_M_contig1488.3343.1|Name=mRNA_F-serratus_M_contig1488.3343.1|organism=Fucus serratus male|type=mRNA|length=35421bp|location=Sequence derived from alignment at F-serratus_M_contig1488:104599..140019+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1488:104599..140019+ >mRNA_F-serratus_M_contig1488.3343.1 ID=mRNA_F-serratus_M_contig1488.3343.1|Name=mRNA_F-serratus_M_contig1488.3343.1|organism=Fucus serratus male|type=CDS|length=5352bp|location=Sequence derived from alignment at F-serratus_M_contig1488:104599..140019+ (Fucus serratus male)back to top |