mRNA_F-serratus_M_contig1488.3339.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1488.3339.1
Unique NamemRNA_F-serratus_M_contig1488.3339.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1488.3339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1488contigF-serratus_M_contig1488:53273..54033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size763
Cds size696
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.9425795-UTR-F-serratus_M_contig1488:53272..533371622929459.9425795-UTR-F-serratus_M_contig1488:53272..53337Fucus serratus maleUTRF-serratus_M_contig1488 53273..53337 +
1690962863.2747328-UTR-F-serratus_M_contig1488:53272..533371690962863.2747328-UTR-F-serratus_M_contig1488:53272..53337Fucus serratus maleUTRF-serratus_M_contig1488 53273..53337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.9577615-CDS-F-serratus_M_contig1488:53337..540331622929459.9577615-CDS-F-serratus_M_contig1488:53337..54033Fucus serratus maleCDSF-serratus_M_contig1488 53338..54033 +
1690962863.282676-CDS-F-serratus_M_contig1488:53337..540331690962863.282676-CDS-F-serratus_M_contig1488:53337..54033Fucus serratus maleCDSF-serratus_M_contig1488 53338..54033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1488.3339.1prot_F-serratus_M_contig1488.3339.1Fucus serratus malepolypeptideF-serratus_M_contig1488 53338..54033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1488.3339.1

>prot_F-serratus_M_contig1488.3339.1 ID=prot_F-serratus_M_contig1488.3339.1|Name=mRNA_F-serratus_M_contig1488.3339.1|organism=Fucus serratus male|type=polypeptide|length=232bp
MPPVAFGDTDPRRWGFQADSAAVESVGVLGWPGGESLSSNLGVGGGGRVR
TEENGSDVHTAGGATESPRRLAADEGERRRGSGFRDSPADHRGRSPDPRP
MDPRIMVDSNNIVGGNHPGVGGGGPPSRQGSPFSRPFDFTPAHQQLPGSM
EPSSSGLAGGSSYGVARVHHQTTSGLSARSGAGPSRRRSAFEESMGPSSA
ADYPYGMPSSSENVNQGADSTGGMLMGSLGGG
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mRNA from alignment at F-serratus_M_contig1488:53273..54033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1488.3339.1 ID=mRNA_F-serratus_M_contig1488.3339.1|Name=mRNA_F-serratus_M_contig1488.3339.1|organism=Fucus serratus male|type=mRNA|length=761bp|location=Sequence derived from alignment at F-serratus_M_contig1488:53273..54033+ (Fucus serratus male)
CCCGCCGTCCGACAGGCTCGACTCGGGGTGGCCAATCGTTCGGTGGATGA
GTTGAGGAAGGGAGCATGCCACCAGTAGCCTTCGGCGATACGGATCCAAG
ACGCTGGGGTTTTCAGGCCGACAGCGCCGCGGTCGAAAGCGTAGGAGTTT
TGGGTTGGCCTGGAGGCGAGAGCCTGTCCTCGAATTTAGGAGTCGGAGGA
GGCGGTCGTGTACGAACGGAGGAGAACGGCAGCGACGTGCACACCGCGGG
TGGTGCCACCGAAAGCCCTAGAAGACTGGCGGCTGACGAAGGTGAACGCC
GGCGTGGTTCAGGGTTCCGGGACTCGCCCGCTGACCACCGCGGGAGAAGC
CCCGACCCGCGACCGATGGACCCGCGAATTATGGTAGACTCAAATAACAT
CGTGGGTGGCAACCACCCGGGGGTAGGCGGTGGCGGGCCACCTTCACGCC
AGGGATCGCCCTTCTCGCGCCCCTTCGACTTTACCCCCGCCCATCAGCAG
CTGCCTGGATCGATGGAGCCGTCTTCCTCTGGCCTCGCTGGGGGGTCTTC
CTATGGCGTTGCAAGGGTTCACCATCAGACGACCTCGGGTCTTTCAGCCC
GATCAGGAGCAGGTCCTTCACGCCGTCGGTCCGCCTTCGAGGAGTCCATG
GGACCATCTTCGGCAGCTGATTACCCGTACGGAATGCCTTCAAGCAGCGA
GAATGTAAACCAAGGGGCAGATTCTACCGGCGGAATGCTTATGGGCAGTC
TCGGAGGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1488:53273..54033+

>mRNA_F-serratus_M_contig1488.3339.1 ID=mRNA_F-serratus_M_contig1488.3339.1|Name=mRNA_F-serratus_M_contig1488.3339.1|organism=Fucus serratus male|type=CDS|length=1392bp|location=Sequence derived from alignment at F-serratus_M_contig1488:53273..54033+ (Fucus serratus male)
ATGCCACCAGTAGCCTTCGGCGATACGGATCCAAGACGCTGGGGTTTTCA
GGCCGACAGCGCCGCGGTCGAAAGCGTAGGAGTTTTGGGTTGGCCTGGAG
GCGAGAGCCTGTCCTCGAATTTAGGAGTCGGAGGAGGCGGTCGTGTACGA
ACGGAGGAGAACGGCAGCGACGTGCACACCGCGGGTGGTGCCACCGAAAG
CCCTAGAAGACTGGCGGCTGACGAAGGTGAACGCCGGCGTGGTTCAGGGT
TCCGGGACTCGCCCGCTGACCACCGCGGGAGAAGCCCCGACCCGCGACCG
ATGGACCCGCGAATTATGGTAGACTCAAATAACATCGTGGGTGGCAACCA
CCCGGGGGTAGGCGGTGGCGGGCCACCTTCACGCCAGGGATCGCCCTTCT
CGCGCCCCTTCGACTTTACCCCCGCCCATCAGCAGCTGCCTGGATCGATG
GAGCCGTCTTCCTCTGGCCTCGCTGGGGGGTCTTCCTATGGCGTTGCAAG
GGTTCACCATCAGACGACCTCGGGTCTTTCAGCCCGATCAGGAGCAGGTC
CTTCACGCCGTCGGTCCGCCTTCGAGGAGTCCATGGGACCATCTTCGGCA
GCTGATTACCCGTACGGAATGCCTTCAAGCAGCGAGAATGTAAACCAAGG
GGCAGATTCTACCGGCGGAATGCTTATGGGCAGTCTCGGAGGGGGGATGC
CACCAGTAGCCTTCGGCGATACGGATCCAAGACGCTGGGGTTTTCAGGCC
GACAGCGCCGCGGTCGAAAGCGTAGGAGTTTTGGGTTGGCCTGGAGGCGA
GAGCCTGTCCTCGAATTTAGGAGTCGGAGGAGGCGGTCGTGTACGAACGG
AGGAGAACGGCAGCGACGTGCACACCGCGGGTGGTGCCACCGAAAGCCCT
AGAAGACTGGCGGCTGACGAAGGTGAACGCCGGCGTGGTTCAGGGTTCCG
GGACTCGCCCGCTGACCACCGCGGGAGAAGCCCCGACCCGCGACCGATGG
ACCCGCGAATTATGGTAGACTCAAATAACATCGTGGGTGGCAACCACCCG
GGGGTAGGCGGTGGCGGGCCACCTTCACGCCAGGGATCGCCCTTCTCGCG
CCCCTTCGACTTTACCCCCGCCCATCAGCAGCTGCCTGGATCGATGGAGC
CGTCTTCCTCTGGCCTCGCTGGGGGGTCTTCCTATGGCGTTGCAAGGGTT
CACCATCAGACGACCTCGGGTCTTTCAGCCCGATCAGGAGCAGGTCCTTC
ACGCCGTCGGTCCGCCTTCGAGGAGTCCATGGGACCATCTTCGGCAGCTG
ATTACCCGTACGGAATGCCTTCAAGCAGCGAGAATGTAAACCAAGGGGCA
GATTCTACCGGCGGAATGCTTATGGGCAGTCTCGGAGGGGGG
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