mRNA_F-serratus_M_contig1487.3338.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1487.3338.1
Unique NamemRNA_F-serratus_M_contig1487.3338.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1487.3338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1487contigF-serratus_M_contig1487:209237..209740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1487.3338.1prot_F-serratus_M_contig1487.3338.1Fucus serratus malepolypeptideF-serratus_M_contig1487 209237..209713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.446607-CDS-F-serratus_M_contig1487:209236..2093201622929459.446607-CDS-F-serratus_M_contig1487:209236..209320Fucus serratus maleCDSF-serratus_M_contig1487 209237..209320 -
1690962863.0211394-CDS-F-serratus_M_contig1487:209236..2093201690962863.0211394-CDS-F-serratus_M_contig1487:209236..209320Fucus serratus maleCDSF-serratus_M_contig1487 209237..209320 -
1622929459.4664538-CDS-F-serratus_M_contig1487:209503..2097131622929459.4664538-CDS-F-serratus_M_contig1487:209503..209713Fucus serratus maleCDSF-serratus_M_contig1487 209504..209713 -
1690962863.031898-CDS-F-serratus_M_contig1487:209503..2097131690962863.031898-CDS-F-serratus_M_contig1487:209503..209713Fucus serratus maleCDSF-serratus_M_contig1487 209504..209713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.4816062-UTR-F-serratus_M_contig1487:209713..2097401622929459.4816062-UTR-F-serratus_M_contig1487:209713..209740Fucus serratus maleUTRF-serratus_M_contig1487 209714..209740 -
1690962863.0410087-UTR-F-serratus_M_contig1487:209713..2097401690962863.0410087-UTR-F-serratus_M_contig1487:209713..209740Fucus serratus maleUTRF-serratus_M_contig1487 209714..209740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1487.3338.1

>prot_F-serratus_M_contig1487.3338.1 ID=prot_F-serratus_M_contig1487.3338.1|Name=mRNA_F-serratus_M_contig1487.3338.1|organism=Fucus serratus male|type=polypeptide|length=98bp
MFLSPPVSQARRFGVATVPMGLGIRAPPIAGTVHGMLGHPPRAMMANQQP
QQSQQLQLQQQHQAGRGYFYPQLLQLHGQQQSQHQQHRHQMQHRPQLD
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mRNA from alignment at F-serratus_M_contig1487:209237..209740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1487.3338.1 ID=mRNA_F-serratus_M_contig1487.3338.1|Name=mRNA_F-serratus_M_contig1487.3338.1|organism=Fucus serratus male|type=mRNA|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig1487:209237..209740- (Fucus serratus male)
GTTGCCCCATCACAGCTTACCAACCCAATGTTCCTCAGTCCCCCTGTAAG
CCAAGCTAGGAGGTTCGGAGTGGCCACAGTTCCGATGGGGCTCGGCATAC
GTGCACCCCCAATAGCGGGCACGGTGCACGGCATGCTGGGGCACCCGCCG
CGTGCAATGATGGCCAATCAACAGCCGCAGCAGTCACAGCAGCTGCAACT
ACAGCAGCAGCATCAGGCTGGCCGAGGATATTTTTACGTGAGAAGAGATA
TTTTGCATTAGCTTGCGTGTCGCCGGCATCTTTCCGAAAAATAATTTTAT
TGGCCAGTTTTACGGTGTTTTGTGCGACCCAAGCCCCATCTGTGATCCTA
TTGCTCTGATAAAAAGCACTGATTCAACGTAATCCATTGCTTTGATCGTC
CTTGTTCGCGTGATTTCCAGCCCCAGCTCCTCCAACTCCACGGACAGCAA
CAATCGCAGCACCAGCAGCATCGGCACCAGATGCAGCACCGGCCACAGCT
TGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1487:209237..209740-

>mRNA_F-serratus_M_contig1487.3338.1 ID=mRNA_F-serratus_M_contig1487.3338.1|Name=mRNA_F-serratus_M_contig1487.3338.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1487:209237..209740- (Fucus serratus male)
ATGTTCCTCAGTCCCCCTGTAAGCCAAGCTAGGAGGTTCGGAGTGGCCAC
AGTTCCGATGGGGCTCGGCATACGTGCACCCCCAATAGCGGGCACGGTGC
ACGGCATGCTGGGGCACCCGCCGCGTGCAATGATGGCCAATCAACAGCCG
CAGCAGTCACAGCAGCTGCAACTACAGCAGCAGCATCAGGCTGGCCGAGG
ATATTTTTACATGTTCCTCAGTCCCCCTGTAAGCCAAGCTAGGAGGTTCG
GAGTGGCCACAGTTCCGATGGGGCTCGGCATACGTGCACCCCCAATAGCG
GGCACGGTGCACGGCATGCTGGGGCACCCGCCGCGTGCAATGATGGCCAA
TCAACAGCCGCAGCAGTCACAGCAGCTGCAACTACAGCAGCAGCATCAGG
CTGGCCGAGGATATTTTTACCCCCAGCTCCTCCAACTCCACGGACAGCAA
CAATCGCAGCACCAGCAGCATCGGCACCAGATGCAGCACCGGCCACAGCT
TGATCCCCAGCTCCTCCAACTCCACGGACAGCAACAATCGCAGCACCAGC
AGCATCGGCACCAGATGCAGCACCGGCCACAGCTTGAT
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