mRNA_F-serratus_M_contig1479.3309.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1479.3309.1
Unique NamemRNA_F-serratus_M_contig1479.3309.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.430e-23
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:  109 NTAQMCSNGLAGVD-NSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGS-------DSICISNGLSGLENNGV-CCVAECPQCG 399
            ++A+ CSNGL G+D N  VCC   CG CGG+GC + G AFGL    CC G ++ ++ YCD++  APCIIGS        +   SNGL G++ NGV CC   C QCG
Sbjct:  188 SSARTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCG 293
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BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.540e-17
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:  124 CSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGLENNGVCCVAECPQCG 399
            CSNGL+G++   VCC  ECGTCGG+GCGSR    GLT  DCC   I++ N  C  +  APC+I  ++       +G+    +CC A C  CG
Sbjct:   24 CSNGLSGLEKGGVCCPVECGTCGGTGCGSRP---GLTKYDCCTSTIKEDNHLCSVTKEAPCVIDEETEADPTCSNGVAKGDICCSAGCGYCG 112
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BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.620e-15
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  112 TAQMCSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGLENNGVCCVAECPQC 396
            T  MC  G+ G+  SDVCC A CG+CGG+GC  R    G     CC G +R +  YC  +G APC+  +  +C   G+ G++ + VCC A C  C
Sbjct:   42 TVSMCDGGIVGIQTSDVCCSASCGSCGGTGCSGRDGGSGA----CCGGGVRASGRYCSVTGEAPCM--TVPMC-DGGIVGIQASDVCCSASCGSC 129
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BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-14
Identity = 48/113 (42.48%), Postives = 58/113 (51.33%), Query Frame = 1 
Query:   91 LLMVVSNTAQMCSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICI----------SNGLSGLENNGVCCVAECPQCG 399
            LL   S+     S G  G+   DVCC AECGTCGGSGCGSR    GLTA++CC   I  ANV C   G+APC++  D+             S    G+     CC A C +CG
Sbjct:   73 LLEEGSSPTPASSGGCDGILQGDVCCSAECGTCGGSGCGSRA---GLTANECCTSTIAAANVPC---GSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECG 179
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BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.430e-14
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:  121 MCSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGS----------------DSICISNGLSGLENNGVCCVAECPQCG 399
            MC  G+ G+ +SDVCC A CG+CGGSGC  R       ++ CC G +R +  YC  +G APC+ G                 +      G+ G++++ VCC A C  CG
Sbjct:  238 MCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGG----SESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCG 342
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BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.920e-14
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  121 MCSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGLENNGVCCVAECPQCG 399
            MC   + G+ +SDVCC A CG+CGGSGC  R       ++ CC G +R +  YC  +G APC+  +  +C  + + G++++ VCC A C  CG
Sbjct:    1 MCDGDIVGIQSSDVCCSASCGSCGGSGCTGRDGG----SESCCGGGVRASGRYCSITGEAPCM--TVPMCDGD-IVGIQSSDVCCSASCGSCG 86
[Close]
BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.890e-13
Identity = 37/105 (35.24%), Postives = 51/105 (48.57%), Query Frame = 1 
Query:  121 MCSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGS----------------DSICISNGLSGLENNGVCCVAEC 387
            MC  G+ G+  SDVCC A CG+CGGSGC  R       +D CC G +R +  +C  +G APC+ G                 +      G+ G++ + VCC A C
Sbjct:    1 MCDGGIVGIQASDVCCSASCGSCGGSGCSGRDGG----SDACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQASDVCCSASC 101
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BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: A0A7S1IY02_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IY02_9EUGL)

HSP 1 Score: 74.3 bits (181), Expect = 7.560e-13
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  124 CSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCII 312
            CS G+ G   +D+CC A CGTCGG+GCGSR       A +CCVG I DA +YCD++G  PCI+
Sbjct: 1487 CSTGVVGP--ADICCAASCGTCGGTGCGSRSGG----AANCCVGAITDAKLYCDETGGPPCIM 1543
[Close]
BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: A0A6H5K5T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.950e-12
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:  121 MCSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCI 309
            MC  G+ G+  SDVCC A CG+CGGSGC SR       ++ CC G +R +  YC  +G APC+
Sbjct:    1 MCDGGIVGIQASDVCCSASCGSCGGSGCTSRDGG----SESCCGGGVRASGRYCSITGEAPCL 59
[Close]
BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.210e-12
Identity = 40/112 (35.71%), Postives = 51/112 (45.54%), Query Frame = 1 
Query:  115 AQMCSNGLAGVDNSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSI-----------------CISNGLSGLENNGVCCVAECPQCG 399
            A MC  G+ G+  SDVCC A CG+C GSGC  R        D CC G +R +  +C  +G APCI G                     C   G+ G++ + VCC   C  CG
Sbjct:  394 APMCDGGIIGIQTSDVCCSASCGSCXGSGCSGRDGG----PDACCGGGVRASGRFCSVTGEAPCITGPAPTPXXXXXXXXXXTIEVPEC-DGGIVGIQASDVCCSLSCGSCG 500
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1479.3309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC43_9PHAE4.430e-2348.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNF5_9PHAE3.540e-1744.57MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G3U7_ECTSI2.620e-1541.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWE8_ECTSI1.750e-1442.48Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G4E0_ECTSI2.430e-1435.78N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5JTV1_9PHAE5.920e-1439.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVK3_9PHAE1.890e-1335.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1IY02_9EUGL7.560e-1353.97Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A6H5K5T3_9PHAE2.950e-1247.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ0_9PHAE3.210e-1235.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1479contigF-serratus_M_contig1479:199833..201577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue7.3e-20
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size402
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1479.3309.1prot_F-serratus_M_contig1479.3309.1Fucus serratus malepolypeptideF-serratus_M_contig1479 199834..201577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929453.533572-CDS-F-serratus_M_contig1479:199833..1999131622929453.533572-CDS-F-serratus_M_contig1479:199833..199913Fucus serratus maleCDSF-serratus_M_contig1479 199834..199913 -
1690962860.0390306-CDS-F-serratus_M_contig1479:199833..1999131690962860.0390306-CDS-F-serratus_M_contig1479:199833..199913Fucus serratus maleCDSF-serratus_M_contig1479 199834..199913 -
1622929453.5479276-CDS-F-serratus_M_contig1479:201106..2013101622929453.5479276-CDS-F-serratus_M_contig1479:201106..201310Fucus serratus maleCDSF-serratus_M_contig1479 201107..201310 -
1690962860.0502996-CDS-F-serratus_M_contig1479:201106..2013101690962860.0502996-CDS-F-serratus_M_contig1479:201106..201310Fucus serratus maleCDSF-serratus_M_contig1479 201107..201310 -
1622929453.5628664-CDS-F-serratus_M_contig1479:201462..2015771622929453.5628664-CDS-F-serratus_M_contig1479:201462..201577Fucus serratus maleCDSF-serratus_M_contig1479 201463..201577 -
1690962860.06025-CDS-F-serratus_M_contig1479:201462..2015771690962860.06025-CDS-F-serratus_M_contig1479:201462..201577Fucus serratus maleCDSF-serratus_M_contig1479 201463..201577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1479.3309.1

>prot_F-serratus_M_contig1479.3309.1 ID=prot_F-serratus_M_contig1479.3309.1|Name=mRNA_F-serratus_M_contig1479.3309.1|organism=Fucus serratus male|type=polypeptide|length=133bp
VRVAAQTIGQAEEGFNITMWSTRWLFVLQGLLMVVSNTAQMCSNGLAGVD
NSDVCCVAECGTCGGSGCGSRGQAFGLTADDCCVGRIRDANVYCDDSGAA
PCIIGSDSICISNGLSGLENNGVCCVAECPQCG
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mRNA from alignment at F-serratus_M_contig1479:199833..201577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1479.3309.1 ID=mRNA_F-serratus_M_contig1479.3309.1|Name=mRNA_F-serratus_M_contig1479.3309.1|organism=Fucus serratus male|type=mRNA|length=1745bp|location=Sequence derived from alignment at F-serratus_M_contig1479:199833..201577- (Fucus serratus male)
GTACGGGTTGCAGCGCAAACCATCGGACAAGCAGAAGAGGGCTTCAATAT
TACCATGTGGTCTACGCGATGGCTATTTGTCCTTCAAGGGCTTCTGATGG
TTGTCTCTAACACCGGTGAGTCTGCATCAAGAATCTAAGACAGTTTCATC
TACTGTAGAACTTACGTTGATTTGTTGTGCGTCTGATGTCACCGCATTCC
ACAAGCCCCGTCGTTGATTTTTCTCCCGGATTCCCTAACGTTTATCACGT
TGGTATCGGACAAGCAGCTCAGATGTGCAGCAATGGACTCGCCGGCGTCG
ATAATTCCGACGTGTGCTGCGTGGCTGAGTGCGGAACGTGTGGTGGCTCG
GGCTGCGGAAGCCGGGGCCAGGCTTTCGGCCTAACTGCGGACGACTGTTG
TGTCGGACGCATCAGGGATGCAAACGTGTATTGCGACGACTCCGGGGCCG
CGCCTTGCATCATCGGCAGTGGTGAGGGGTTTGGACAGAGTTGGTTGACA
GCGACATCCTTCATCACAAGAGACGCAATTTACATATTTTATTGTCATCA
TAATAGATGACGTGCTGCGATCGATCATACTGATCTAGGCACCGTATGGT
CAACGGTCGCCGCTCAGATAAGGCCGTTGAATGTGCACCACCACTAGAAA
ATCCCTCGTCCTCATATTTTCTGTCTATCGCATGGGAATCTTCCCTCACG
AGAGTTGTAGTTGTTGTTGTTGCTGTCTTCACATTAAAAACCGTTCTGAC
CTCTATCCAGTACCTTCTCTTTCTTACTCTTCAAGGCAAAGAAACGAATT
TCCGTGGTCACAAGCTAACCCAAACTAAGGCACAGAAAAATAATAAAATA
AAATAAAAAGACCCAGAGAAGGTTCCAACATTAGCCAAAAAATAAAATAA
TAATAATAACAAGTTCAGAAAACAAGGAGCAGGTTGGGGCAGGAAAAAAC
CCCAACAAGGAAGTAAAGCCCATCGCTCCAAACTCGGAAGCGGAGTCACA
AAAAAATAAAAAATAAAAATATATAGGGATACCAATACAGGTACAAAACT
AAATTTGAACAGGACGCTACCCCCCCTCCCCTACGATGCCGGGGAGTGTT
CATCGTCGGGTTCCCGCCGACCAGGCCATTCCCACTCAACACCCTGGAGC
TATGAGAGGGCAAAAACAAAATTAAAACTAACGACGCACATCATGCAATA
TAGTACCATATGTCCTAGACAGTCTCTCCACGCGCCCCTACTATGCCGGG
GAGCTCTAGCGCGAGACAACTTGTTGGCCTGTTTGATAACAGATCTACGG
CCCTAGCCACATAAGGTGGCTTGCTTCAGGCTTTGCATAAAAGGTCTCAC
CCGATCATTTCTCGTTTAGCGTTTTTACAAGGCGTACTCAATTTGTTTTG
ATATTACTTTTGATTCTGGTTTCTCTTCCGTTGAAGGGCCTGACTGATGG
TCAAGACGGGACAACCTATATGTAGCCTACTACTTAATACTGCCCCTTAA
ACGTTTTGAAGCTACCTATTAGTTGATCGAAAACGTGGAACGGGAGCGAT
TTTGCGCAATACACCATCATCGTGTTTTTGGTGCCGTCCATTCACATGTT
ACTTGTATACAGTAACTTATTTCCCCTCGCGTTTGGTCCGTTTCTTTGCT
TCTCGATCGATCAGATTCGATATGCATTAGCAACGGCCTATCCGGCCTCG
AGAATAACGGAGTATGTTGTGTGGCTGAATGCCCACAATGCGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1479:199833..201577-

>mRNA_F-serratus_M_contig1479.3309.1 ID=mRNA_F-serratus_M_contig1479.3309.1|Name=mRNA_F-serratus_M_contig1479.3309.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1479:199833..201577- (Fucus serratus male)
GTACGGGTTGCAGCGCAAACCATCGGACAAGCAGAAGAGGGCTTCAATAT
TACCATGTGGTCTACGCGATGGCTATTTGTCCTTCAAGGGCTTCTGATGG
TTGTCTCTAACACCGGTACGGGTTGCAGCGCAAACCATCGGACAAGCAGA
AGAGGGCTTCAATATTACCATGTGGTCTACGCGATGGCTATTTGTCCTTC
AAGGGCTTCTGATGGTTGTCTCTAACACCGCTCAGATGTGCAGCAATGGA
CTCGCCGGCGTCGATAATTCCGACGTGTGCTGCGTGGCTGAGTGCGGAAC
GTGTGGTGGCTCGGGCTGCGGAAGCCGGGGCCAGGCTTTCGGCCTAACTG
CGGACGACTGTTGTGTCGGACGCATCAGGGATGCAAACGTGTATTGCGAC
GACTCCGGGGCCGCGCCTTGCATCATCGGCAGTGCTCAGATGTGCAGCAA
TGGACTCGCCGGCGTCGATAATTCCGACGTGTGCTGCGTGGCTGAGTGCG
GAACGTGTGGTGGCTCGGGCTGCGGAAGCCGGGGCCAGGCTTTCGGCCTA
ACTGCGGACGACTGTTGTGTCGGACGCATCAGGGATGCAAACGTGTATTG
CGACGACTCCGGGGCCGCGCCTTGCATCATCGGCAGTGATTCGATATGCA
TTAGCAACGGCCTATCCGGCCTCGAGAATAACGGAGTATGTTGTGTGGCT
GAATGCCCACAATGCGGCATTCGATATGCATTAGCAACGGCCTATCCGGC
CTCGAGAATAACGGAGTATGTTGTGTGGCTGAATGCCCACAATGCGGC
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