mRNA_F-serratus_M_contig1478.3302.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 166 bits (421), Expect = 2.600e-43 Identity = 105/251 (41.83%), Postives = 146/251 (58.17%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTI--SRGEARPSV-FISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
AR +L T NVRT+A G++ + +++ TDCDV GLQETR +GQ A+ G V+ SG G + K+G GVG+A+ +T+ S GE +V IS RL+K L++ GR VTFVVGYAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G + K++GAYGRD +N+NGER L A + L+L+NT+ + H F G+ K R+D++L R
Sbjct: 85 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKD-KRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHRLDFILMR 330
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 149 bits (377), Expect = 4.600e-41 Identity = 96/220 (43.64%), Postives = 133/220 (60.45%), Query Frame = 1
Query: 136 LEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTI--SRGEARPSV-FISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
+++ TDCDV GLQETR +GQ A+ G V+ SG G + K+G GVG+A+ +T+ S GE +V IS RL+K L++ GR VTFVVGYAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G + K++GAYGRD +N+NGER L A + L+L+NT+ I + +H F G+ K R+D++L R
Sbjct: 4 MQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKD-KRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY--IRTPKGVHTFQSSNKGKEKHRLDFILMR 216
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 158 bits (400), Expect = 4.830e-41 Identity = 99/251 (39.44%), Postives = 140/251 (55.78%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTISRG---EARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
AR +L T NVRT+A G++ + +++ T CDV GLQETR +GQ ++ G V+ SG G + K+G GVG+A+ + + E R IS RL+K L++ GR VTFVVGYAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G + K++GAYGRD +N+NGER L + ++L+L NT+ + H F G+ K R+D +L R
Sbjct: 81 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPKGGVQHTFQSSNKGKEKYRLDLILMR 326
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 150 bits (380), Expect = 1.390e-40 Identity = 96/249 (38.55%), Postives = 136/249 (54.62%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTISRG---EARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVL 750
AR +L T NV T+A G++ + +++ T CDV GLQETR GQ ++ G V+ SG G + K+G GVG+A+ + I E R IS RL+K L++ GR VTFVVGYAPT+T V K +FWTAL ++EV LVVL+ A+A TGR G + K++GA GRD +N+NGER L + ++L+L NT+ + H F G+ K R+D++L
Sbjct: 4 AREGDLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDGCC---DAKIMGANGRDIMNNNGERLLELASDNQLSLTNTYFPTPKGGVQHTFQSSNKGKEKYRLDFIL 247
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.550e-40 Identity = 97/251 (38.65%), Postives = 140/251 (55.78%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTISRG---EARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
AR +L T NVRT+A G++ + +++ T CDV GLQETR +GQ ++ G V+ SG G + K+G GVG+A+ + + E R IS RL+K L++ GR VTF+VGYAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G + K++GAYGRD +N+NGER L + ++L+L NT+ + H F G+ K R+D++ R
Sbjct: 170 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC---DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFIFMR 415
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.920e-40 Identity = 96/251 (38.25%), Postives = 138/251 (54.98%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTISRG---EARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
AR +L T NVRT+A G++ + +++ T CDV GLQETR +GQ ++ G V+ SG G + K+G GVG+ + + + E R I RL+K L++ GR V FVVGYAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G + K++GAYGRD +N+NGER L + ++L+L NT+ + H F G+ K R+D++L R
Sbjct: 76 AREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQI-GRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMR 321
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.670e-40 Identity = 98/252 (38.89%), Postives = 142/252 (56.35%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAV----CKTISRGEARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
AR +L T +VRT+ G++ + + +++ T CDV GLQETR GQ ++ G V+ SG G + K+G+ GVG+A+ +T+ E R IS RL+K L++ GR VTFVVGYAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G + K++GAYGRD +N+NGER L + ++L+L NT+ + H F G+ K R+D++L R
Sbjct: 150 AREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGEQGVGIAIKEAMWETVGE-EGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQCSNKGKEKYRLDFILMR 395
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE) HSP 1 Score: 154 bits (389), Expect = 3.480e-39 Identity = 97/251 (38.65%), Postives = 138/251 (54.98%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTISRG---EARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
AR +L T NVRT+A G++ + +++ T CDV GL ETR GQ ++ G V+ SG G E K+G G+G+A+ + + E R IS RL+K L++ GR VTFVVGYAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G K++GAYGRD +N++GER L + ++L+L NT+ + H F G+ K R+D++L R
Sbjct: 32 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHDGYVIIWSGARAGTKE-KRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---NAKIMGAYGRDIMNNSGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMR 277
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.050e-38 Identity = 89/221 (40.27%), Postives = 126/221 (57.01%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTISRG---EARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTF 678
AR +L T NVRT+A G++ + +++ T CDV GLQETR GQ ++ G V+ SG G + K+G GVG+A+ +T+ E R I RL+K L + GR +TFVV YAPT+T + K +FWTAL V++EV H LVVL+DA+A TGR G + K++G YGRD +N+NGER L + ++L+L NT+
Sbjct: 143 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCC---DAKIMGVYGRDIMNNNGERLLGLASNNQLSLTNTY 358
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.210e-38 Identity = 97/251 (38.65%), Postives = 138/251 (54.98%), Query Frame = 1
Query: 46 ARRTELVIATHNVRTMAMDGKHGVDR-AAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSGESEGDGEGKKGQGGVGLAVCKTISRG---EARPSVFISDRLLKATLELCGRARAVTFVVGYAPTDTQY------VGKKHAFWTALGRVVKEVPKH*QLVVLIDADACTGRTGGGKLASEECKVLGAYGRDTLNDNGERPLSFFAKHELALLNTFSSIANNEILHAFN----GRGKKRIDYVLTR 756
AR +L T NV T+A G++ + +++ T CDV GLQETR GQ ++ G V+ SG G + K+G GVG+A+ + + E R IS RL+K L++ GR VTFVV YAPT+T V K +FWTAL ++EV LVVL+DA+A TGR G + K++GAYGRD +N+NGER L + ++L+L NT+ + H F G+ K R+D++L R
Sbjct: 652 AREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD-KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMR 897 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1478.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1478.3302.1 >prot_F-serratus_M_contig1478.3302.1 ID=prot_F-serratus_M_contig1478.3302.1|Name=mRNA_F-serratus_M_contig1478.3302.1|organism=Fucus serratus male|type=polypeptide|length=138bp MAMDGKHGVDRAAEALEVYQVTDCDVFGLQETRHSGQSALFRAGCVVYCSback to top mRNA from alignment at F-serratus_M_contig1478:176659..177414- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1478.3302.1 ID=mRNA_F-serratus_M_contig1478.3302.1|Name=mRNA_F-serratus_M_contig1478.3302.1|organism=Fucus serratus male|type=mRNA|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig1478:176659..177414- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1478:176659..177414- >mRNA_F-serratus_M_contig1478.3302.1 ID=mRNA_F-serratus_M_contig1478.3302.1|Name=mRNA_F-serratus_M_contig1478.3302.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig1478:176659..177414- (Fucus serratus male)back to top |