mRNA_F-serratus_M_contig1477.3295.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1477.3295.1
Unique NamemRNA_F-serratus_M_contig1477.3295.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1477.3295.1 vs. uniprot
Match: D8LDD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD7_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.630e-55
Identity = 130/247 (52.63%), Postives = 150/247 (60.73%), Query Frame = 1 
Query: 1855 AATSKTSRLSC---KKGVSLGGTPRPARRPIWESNTPRTPDRASARKAGAEGRGDMDGRWVGGSDPLAPYDRIA----------------EETVDDSGLVELLHTGRRDGYLDLRRYRKPGWPRPLRVTRVEASHGKRFEEHLLRLLKENRRVEATVFLRRLAHFDRHPPHLVAAAENGGCGRWAASIPLWYQELA--------GVGGG---VEELVDLTLGEAEVVECLDNEPLDCVMMDVVKKEP 2505
            A+ +K +R+     K GVS       A      S+ PR   RAS R++   G   +  R  GG   L P                     EETVDD GL  LLHT RRDG+LDLRRYRKPGWPRPLR+TR+EASHGKRFEEHLL LLK+ RR EA VFLRRLAH+DR+PPHL A+   G  G  AA IP WYQEL+        G  GG   +EE+VDLT   AEVVEC DNEPLDCVMM +VK+EP
Sbjct:   45 ASANKKARIKLERDKAGVSPAAGSSAASYRYDSSSRPRAGTRASPRRSPRRGSSAVTPRR-GGGPTLGPXXXXXXXXXXXXRRFGSGTAEEETVDDEGLEGLLHTARRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLVLLKQRRRREANVFLRRLAHYDRNPPHLAASLLAGRRGH-AACIPAWYQELSTAARPAHEGSDGGCDTIEEMVDLTEKRAEVVECYDNEPLDCVMMRIVKQEP 289
[Close]
BLAST of mRNA_F-serratus_M_contig1477.3295.1 vs. uniprot
Match: A0A6H5K6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L5_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 6.250e-54
Identity = 113/165 (68.48%), Postives = 126/165 (76.36%), Query Frame = 1 
Query: 2044 LAPYDRIAEETVDDSGLVELLHTGRRDGYLDLRRYRKPGWPRPLRVTRVEASHGKRFEEHLLRLLKENRRVEATVFLRRLAHFDRHPPHLVAAAENGGCGRWAASIPLWYQELA--------GVGGG---VEELVDLTLGEAEVVECLDNEPLDCVMMDVVKKEP 2505
            LAPY RI EETVDD GL ELLHT RRDG+LDLRRYRKPGWPRPLR+TR+EASHGKRFEEHLL LLK+ RR EA VFLRRL H+DR+PPHL A+ + G  G  AA IP WYQ L+        G   G   +EE+VDLT   AEVVEC DNEPLDCVMM +VK+EP
Sbjct:  885 LAPYARIEEETVDDEGLEELLHTARRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLLLLKQRRRREANVFLRRLVHYDRNPPHLAASLQAGRRGH-AACIPAWYQVLSTAARPAHEGTDDGCDTIEEIVDLTEKRAEVVECYDNEPLDCVMMRIVKQEP 1048
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1477.3295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDD7_ECTSI1.630e-5552.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6L5_9PHAE6.250e-5468.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1477contigF-serratus_M_contig1477:106491..113452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001640.1
Exons6
Model size3207
Cds size2526
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1477.3295.1prot_F-serratus_M_contig1477.3295.1Fucus serratus malepolypeptideF-serratus_M_contig1477 106620..112900 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.391792-UTR-F-serratus_M_contig1477:106490..1066191622929450.391792-UTR-F-serratus_M_contig1477:106490..106619Fucus serratus maleUTRF-serratus_M_contig1477 106491..106619 +
1690962858.4359965-UTR-F-serratus_M_contig1477:106490..1066191690962858.4359965-UTR-F-serratus_M_contig1477:106490..106619Fucus serratus maleUTRF-serratus_M_contig1477 106491..106619 +
1622929450.5150416-UTR-F-serratus_M_contig1477:112900..1134521622929450.5150416-UTR-F-serratus_M_contig1477:112900..113452Fucus serratus maleUTRF-serratus_M_contig1477 112901..113452 +
1690962858.523195-UTR-F-serratus_M_contig1477:112900..1134521690962858.523195-UTR-F-serratus_M_contig1477:112900..113452Fucus serratus maleUTRF-serratus_M_contig1477 112901..113452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.403567-CDS-F-serratus_M_contig1477:106619..1072521622929450.403567-CDS-F-serratus_M_contig1477:106619..107252Fucus serratus maleCDSF-serratus_M_contig1477 106620..107252 +
1690962858.446405-CDS-F-serratus_M_contig1477:106619..1072521690962858.446405-CDS-F-serratus_M_contig1477:106619..107252Fucus serratus maleCDSF-serratus_M_contig1477 106620..107252 +
1622929450.4208732-CDS-F-serratus_M_contig1477:108378..1092711622929450.4208732-CDS-F-serratus_M_contig1477:108378..109271Fucus serratus maleCDSF-serratus_M_contig1477 108379..109271 +
1690962858.4560287-CDS-F-serratus_M_contig1477:108378..1092711690962858.4560287-CDS-F-serratus_M_contig1477:108378..109271Fucus serratus maleCDSF-serratus_M_contig1477 108379..109271 +
1622929450.4406645-CDS-F-serratus_M_contig1477:109702..1097781622929450.4406645-CDS-F-serratus_M_contig1477:109702..109778Fucus serratus maleCDSF-serratus_M_contig1477 109703..109778 +
1690962858.4650621-CDS-F-serratus_M_contig1477:109702..1097781690962858.4650621-CDS-F-serratus_M_contig1477:109702..109778Fucus serratus maleCDSF-serratus_M_contig1477 109703..109778 +
1622929450.464406-CDS-F-serratus_M_contig1477:110476..1109551622929450.464406-CDS-F-serratus_M_contig1477:110476..110955Fucus serratus maleCDSF-serratus_M_contig1477 110477..110955 +
1690962858.4743013-CDS-F-serratus_M_contig1477:110476..1109551690962858.4743013-CDS-F-serratus_M_contig1477:110476..110955Fucus serratus maleCDSF-serratus_M_contig1477 110477..110955 +
1622929450.4809868-CDS-F-serratus_M_contig1477:112153..1125241622929450.4809868-CDS-F-serratus_M_contig1477:112153..112524Fucus serratus maleCDSF-serratus_M_contig1477 112154..112524 +
1690962858.4880853-CDS-F-serratus_M_contig1477:112153..1125241690962858.4880853-CDS-F-serratus_M_contig1477:112153..112524Fucus serratus maleCDSF-serratus_M_contig1477 112154..112524 +
1622929450.4961429-CDS-F-serratus_M_contig1477:112826..1129001622929450.4961429-CDS-F-serratus_M_contig1477:112826..112900Fucus serratus maleCDSF-serratus_M_contig1477 112827..112900 +
1690962858.505254-CDS-F-serratus_M_contig1477:112826..1129001690962858.505254-CDS-F-serratus_M_contig1477:112826..112900Fucus serratus maleCDSF-serratus_M_contig1477 112827..112900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1477.3295.1

>prot_F-serratus_M_contig1477.3295.1 ID=prot_F-serratus_M_contig1477.3295.1|Name=mRNA_F-serratus_M_contig1477.3295.1|organism=Fucus serratus male|type=polypeptide|length=842bp
MQAKEVTVKPTRGWLSLVNEIFWRPPRSVAASDDPPISQQRSSFFPFLRH
VIGDEEKAVLTTLEIPSSGYSRDTSNGNSKPLLSGDDEDASRAPATPRTP
RSCNVSADATVEHADSKNRNSDACRGRGPGGSGSGEASIGLSPRRTRSSS
VLKVKEERSLQKDLPSIWTFLKDAEGWGFVGNSWDVRPPRVEDTSTSLVG
GWERRALAQEQLPAFLVEHPELLERYRQWRERMFRENRARIDGVRGSNRS
TPRKFDRSPCGVRSSRRRASPSPPSPHTPAPTPPLLPLPMESLPPAAPDE
EKNKVRGWQQQRKPSGTGSFKSGTASVSRTTPISASKGPRGRYGSDSPLC
SGSPARRTRSRSACALASHCTSEPGVCLEGGLEAEMMKPTSVRENPVILI
SASGRGQAEVDNGGDSSIRTPIPTGRGRVGVSRGRVKKPEGSSEQQLKHV
QRGLRSGGTKRKAPVVEVGRDCASPDPSAAATPTAASGVGRSRARHRAGG
IVGGVRAKRRRCDIRRIKDHDNVRHGVNRTSNQKNADQQQVHVGAACVQP
PASDGETPKVKMESEDQLSPLPSEAAATSKTSRLSCKKGVSLGGTPRPAR
RPIWESNTPRTPDRASARKAGAEGRGDMDGRWVGGSDPLAPYDRIAEETV
DDSGLVELLHTGRRDGYLDLRRYRKPGWPRPLRVTRVEASHGKRFEEHLL
RLLKENRRVEATVFLRRLAHFDRHPPHLVAAAENGGCGRWAASIPLWYQE
LAGVGGGVEELVDLTLGEAEVVECLDNEPLDCVMMDVVKKEPDPCFAEIA
GGVKGMETGRGDDVEPTGGHDQVTSSVGVGIAVLPVKTEVQ*
back to top

mRNA from alignment at F-serratus_M_contig1477:106491..113452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1477.3295.1 ID=mRNA_F-serratus_M_contig1477.3295.1|Name=mRNA_F-serratus_M_contig1477.3295.1|organism=Fucus serratus male|type=mRNA|length=6962bp|location=Sequence derived from alignment at F-serratus_M_contig1477:106491..113452+ (Fucus serratus male)
CTTGGACTCAACTATTAACAGCAGGTGTTATGGGAGTACAAAGTTGCCAA
CCTGAACGACTTGTGAGCCTAACACTAATTCTGGCGTTGACCCTATCCGA
CTCACCACCGGAGGTGATAGACATTTAAAATGCAGGCCAAGGAGGTAACG
GTGAAACCAACTAGAGGTTGGCTGTCGTTGGTGAACGAGATTTTCTGGCG
CCCTCCCCGGTCGGTGGCGGCATCCGATGACCCGCCTATATCTCAGCAGC
GCAGTTCGTTTTTTCCATTCTTGCGTCACGTGATCGGAGACGAAGAGAAG
GCAGTGCTAACAACGCTGGAGATTCCTTCCTCGGGTTATAGTCGTGATAC
CAGTAATGGTAATAGTAAACCTCTACTCTCCGGGGACGACGAAGATGCTT
CTAGAGCGCCAGCTACACCCAGGACGCCTCGCAGTTGCAACGTATCGGCC
GACGCGACCGTGGAACATGCCGACTCTAAGAATCGCAATTCTGATGCTTG
CAGAGGCCGTGGGCCTGGCGGAAGCGGGAGTGGAGAGGCGAGCATAGGTT
TATCGCCTCGGAGGACGAGATCGAGCTCAGTCTTGAAGGTGAAGGAGGAG
AGGTCACTCCAGAAGGACTTGCCCTCCATATGGACGTTTCTCAAGGACGC
CGAAGGATGGGGCTTCGTTGGTAACAGCTGGGACGTTCGCCCCCCTCGTG
TTGAAGATACTTCAACCAGCCTCGTTGGTGGATGGGAAAGAAGAGCCCTT
GCACAGGAACAGGTCAGTACCTATGCGCTTCCACCACCCCAACAGCGTTG
AGTTCAGGCCGGACATATCCCCCTTTCTCCCATCGACTTCGTATTAGCGT
CTTCATCGCTCGCACCAGGCTATGATGCGAGTAACCAAAAGTGGTGCAAT
AATTCAGATACGCAGAAGCCCTTGTACGAGAACGGTTACAAAGTACGGAA
TACGTGATTGAAGAGGTGATATACTAATGTACCTGGTAGTTACTACCAGT
GTGTACTTGGTATGACGATGATAGTTAATAGTAGTACGTAGTGAAAACAG
CTCTCACGAAGTGTTCTAAAAGTACAGCAGTAGTACAATGCTTTACTTCT
AGACCGTACCACTTGTGTGTAGAACTTATTTTGGTTGCAGCATTTCGGTT
CAATTTTAATATTACGGTATGGCTATTTGCCCCACCGGTGGGCTATTCTC
TTGTTTACCCCCCCACCTGGATCTCGAGTCAAAAGACTTGGTTGGTCGCA
GTATGTGCATGGGTGTGTTAGGGTTAGGGTTAGCTATCATGGGGTATATC
GTGCAGCCCAAACGGTCCTGTCTACGTGCTGCCACGGCCGGTGAGGTGGT
TCCTGACCTTACATACCAGAAAACACCAACCACCCCACCGGCCGTAACAG
CACGTAGACAGGACCGTTTGGGCTGCACGATAGACCCCAGATAGCCCTGC
GACGCGCCAACACACTGATGCAAGTACCGTGACCAACCGTGTCTTCTGAC
GCGAGATCCAGGTGGTGGGGTAAATTTGGGAATGGCCCATCGGTGGGGCA
AATAGCCATTTCCTAAATATTACGGTAGGACTTACCAGGTACTCTGTGAT
AAAATTCTTGCGGTCCCTATTTAGCCGAAGAGATTTACTGAGCAGGCTGT
ACTCCTGAAACAATAGCCATGATATCACACCCGTTTCCCTATCGAGTGGC
GAACTTTAACCCGCTCTCCATCCAGAGTCGACCGTCCTAAATCTTACCTC
GAACCGCTGCGCACCACGACCTGTTATTTGAGGTATTCGCTTCAATTTCT
CTGCTCAATTTCGTTATCATAGCTGGACTTCGAACACCTCTACAAAGTCT
CAGGCTAGACCCACCCTCCCCTTGACCCCACGAACCAGCTGCCTGCTTTT
CTCGTCGAGCATCCTGAGCTGCTGGAGAGGTATCGTCAGTGGCGGGAACG
GATGTTTCGTGAGAACAGGGCTCGCATCGACGGCGTTCGTGGTTCTAACC
GAAGCACTCCGCGGAAATTCGACAGGAGCCCCTGTGGCGTGCGTAGCAGC
AGACGGCGAGCTTCGCCGTCGCCCCCCTCGCCGCACACGCCCGCGCCCAC
GCCGCCGCTTCTACCGCTGCCGATGGAGTCCCTCCCGCCTGCTGCGCCGG
ATGAAGAGAAGAACAAGGTGCGAGGGTGGCAGCAGCAGCGGAAGCCTAGC
GGCACGGGCTCCTTCAAGAGCGGGACCGCCTCTGTATCCCGTACAACCCC
TATCTCCGCCAGCAAAGGACCGCGCGGTCGCTACGGCAGTGACTCGCCCC
TCTGTTCCGGGTCGCCCGCGCGGCGTACTCGTAGCCGAAGCGCCTGCGCG
CTTGCTTCTCATTGTACCTCGGAGCCGGGCGTGTGTTTAGAGGGCGGGTT
GGAAGCGGAAATGATGAAACCTACGAGCGTACGCGAAAACCCAGTTATTT
TGATCTCGGCTTCGGGCCGAGGTCAAGCAGAGGTAGATAACGGCGGTGAC
AGCAGCATCCGGACACCCATCCCCACCGGCCGCGGTCGAGTTGGAGTCTC
GAGGGGGAGGGTCAAGAAGCCTGAGGGTTCATCGGAGCAGCAGCTGAAGC
ATGTGCAGCGGGGATTGAGAAGCGGTGGAACGAAGAGGAAAGCGCCTGTT
GTCGAGGTGGGAAGGGATTGCGCTTCGCCAGATCCTAGTGCTGCTGCTAC
TCCGACTGCTGCTTCTGGGGTGGGAAGATCGAGGGCCAGGCACCGGGCGG
GTGGGATCGTCGGCGGCGTTAGAGCGAAAAGGTGCGCCACTCACAAGCTC
TTATGACGGCGAAGGCGGTTCGCGCGATAGACCCTCGAGCGCTTTTCATA
TTTCCCCAGAAAAATGTGTCTTGTGTTGTGTGTCGGGGGTCATAGCGAGG
TTGTGTGGACAACTGTCCGTGCTCGTTGTCAAGTGCAGAGGCCATGCCCA
TAGTCTCACATGTAAAATCCCCGGCCTAGATAGCGTGAATCACGACAGTG
ATGGTACTCGCCGCTGCACCTTGGCTCTCGTCTGCTCTTTCTCCTCCACC
GCACGCGGTGCTGAACGATATTGTTCCACTCCACTTCGCTCCCTACAGTA
TCCGACCTTTGGCCCCTTTTTTTTATAATCGTTCCGTGTTGGAGCTTTCA
ACCGCCAAACTGAGCGCCGCCATACCATGTATCGCGTTTCCGATTGTGCC
GATATCTTTTAGGCGCCGTTGTGACATTCGTCGGATCAAAGACCATGACA
ACGTTCGTCACGGCGTCAACCGAACCTCTAATCAGAAGGCGAGAGATAGG
TCTAGATTATCCCCTCTCTTTTTTCGTTGATACGTTCGCTGAAAATGGGA
CGCGTGGCGGACAGGAGGTCTATCACGTCCTCTTGAGACTTTCCCCACGG
CCATTGCATAACGCCCCCGACTTTGGCGTTCTTCATACAGTATCGGCTGT
AGGAAGCCTTCGAGTACGTGCACAATCAACCACGAAACTAGATTACAGCA
GACGGAGAGCCCCGCCCCCCCCCACCGAAACAGCGCCCTCCTAGCTTGCA
GTGCTTTGAATGTGACTGATGTCTGTGGTTGTGTTGAGTCTTTCCTCGCC
GTATTGGCGCTTCGCGTGCGAGCTATGATGGTAGCAAAGGCGAGGCAATA
TGAAGAGGAAGGATGACGATTCCTAACTTCGAACCTAGCCGTTATGTGCA
AGCTACCGACACGGAAGTGCCGTTTTTTATTTTTATTTTTATTAAAGTTG
TACAGTACCATGTATTTATTACACTCGTACTTAAAAAGTTGCCAAAGTGT
CTTAACCGGCAAAATTCGTGTACGACCCCTTCGTGCGAAAGCCTTCCTTT
TTTTGTGGTATACGTGTTTCTTGAGCCGACACCGCTCCATAGTGTTATTT
GCCTCCCAGGCACAAAATTACTCTTGCCACCGCGTTTTCCGGTCAAGGGA
GTGCCTCATTTCTTTCTGGCGCTCTCCTCGCCTCAGAATGCCGACCAACA
GCAAGTTCACGTCGGGGCCGCTTGTGTACAACCACCGGCTTCCGACGGCG
AGACGCCCAAGGTGAAGATGGAATCCGAGGACCAGTTGTCCCCTCTGCCG
TCTGAGGCGGCGGCGACCTCGAAGACTTCAAGGTTGTCTTGTAAGAAAGG
GGTGAGTCTCGGCGGCACCCCACGGCCGGCGCGGCGGCCGATTTGGGAGA
GTAATACGCCACGAACGCCCGATAGAGCCTCTGCCCGAAAGGCTGGGGCA
GAAGGCAGAGGGGATATGGATGGTAGGTGGGTTGGTGGTAGTGACCCCTT
GGCGCCGTACGACCGCATCGCGGAGGAGACGGTCGATGACAGTGGACTGG
TGGAGCTGCTGCATACCGGTCGGAGGGATGGATACCTGGACCTCCGGAGG
TACAGGAAGCCCGGGTGGCCGCGACCGTTGAGAGTCACAAGAGTGGAGGC
AAGCCACGGCAAGCGGTGCGTTTGTTGGGATGTGAGGAACACATTAGGAG
TACAAGATACACAACAAGTACAACAAAATATTAATTTTAGCCAATGACAA
AGAGAGGAGATTTTCCCCTTTTGGACGTTTCCTGCCCACAGGTCAATCAT
CTTGCAAAGTTGCTAACCCCACCTACCAGTACTGCTAAGTTTCCCATTCT
GGATACGGTCGGATCTACCTACCCATGTATTTTCCCGGTTCACGCCTTTT
ATATCGATTTTTATCGCGATGCAAGTACAGCACTCCCTTACACAACTCAA
GCAATCCTTAATTTCTACTTTAATAGGAAAAGCAGACTAAAAAAAATCCT
GTTGGTCGAACTAACAGTTTCCGCAAAAATAATTTGGGCGGACACCCATA
GGACCACTCGAGCACTCTTGACAAAAAAAGAAGGAACTCTTGTGTAGAAT
GGTAAAACAATAAGAAAAAACGGTCAGAAGATGAATAAATTCGGAAAAAG
ACATTCCAAGCTGCTATGTGCACGCAAAATATATCGCTCGAAGCTATACA
GCAACTTCAACATTTATTATCTCTGGCTCCGCGTGCAAGCTTACGTTTGT
TGTGATATGCGGAGCGAGAGATGTCATTAGTGGTGACCTCGAATATCGCT
ACACAGTATTAATAGTGCGGAGTCGTGAGTTCGATTCTTGACAAAGTCAG
GATTTTACTTCTGGCTTCCGTAGCGGAAAGCGTGAGAACGTGAGTAGTAT
GTAAAATTCAACCATTGGTTGACGAGGTGTAAGTGTTGAACTTGCATCGC
GATAAAAAGTCGTAGACGAGAACCGGGGAGAGATGGGAAGATCGTTATAT
CGTTATTAATAGTGACCACAGGCATGAAGATGGCAACGTAGAAGTAGATG
GGATTGATAACCTAGTACGTTGAGGCCCATCGGATGTAGGTGAGATACAA
ACAAAAAATGACGATGTTAACTGACAGACGCCCCCTGCTACGCTATAAAG
CTGCCGCACAAGACTACCCTCAACCGCCGACCTCATGTTATCGATAGAAG
ACTTTCCTCAGAAAATAGCCCCCGGCGGGTTCCTCTCACCTCCGTTGAGC
CTTAACATTGTCCTATTAATAGTACTGTGCTGTGCTTGACCTTCCACCAC
GATCTTCCGTAACCTTGTCATGATGTTGCTCCATTCACGAATTGAGCGTC
GGTCATGCGGCAGGTTCGAAGAGCACCTACTGCGCCTGCTGAAAGAAAAC
AGGCGCGTTGAGGCCACGGTTTTCCTGCGCCGACTCGCGCACTTTGACCG
CCACCCTCCTCACCTAGTCGCGGCGGCTGAGAACGGTGGTTGCGGGAGAT
GGGCCGCGTCCATCCCCTTGTGGTACCAAGAGCTCGCCGGGGTTGGCGGC
GGCGTGGAGGAGCTGGTGGACCTGACTCTTGGCGAGGCGGAGGTGGTGGA
GTGTCTCGACAACGAGCCCCTGGATTGCGTAATGATGGATGTTGTGAAGA
AGGAGCCGGACCCGTGCTTCGCAGAGATAGCCGGAGGGGTGAAGGGAATG
GAGACAGGCCGTGGCGACGACGTCGAGCCGACTGGTGAGGAAGGGGCGTG
GAGTTGATGGGCTCTCGTCATTTTTTATTTGATTCCGTTTCTTGTTATTT
TTGTATTGTTTCTTGTGAGGGGAAGGAAGAGGGGGTAATATTTTTCGACC
ACCTTCTTGTAAAGCACGACACGGTTTTTTGTGCTGTCCCCGCGCTGCAG
AACCTCGCTTGATGCAATATTATGCCACTTGTGAATTCGACAACCCGCCT
TGGTCCTATAACGAGGGAAAAGAGAAAACATGTCTCAAGATACTTCCCCT
CCTTTCGCGGCCTATTATTATTTTCCGAATCATTAGGCGGGCACGACCAG
GTGACCTCGTCCGTCGGCGTAGGCATCGCCGTACTACCTGTCAAGACGGA
GGTACAGTAGCTTGCGCCATCGTCTGCTGGAAAATCTGTGAGGTACCTTT
CTTTCCGGGTATTAGTGGTTCAAGTCGCTCCTTCGGCGGCGGTGACCGTT
ATAGAGTGTACCAGCATAGAAAATAGAATAAAATTGGATGTCAGGAGTTC
GCAGAATGTGACCGGGAGGCGGTATTCAAGGGAGAGCGCACTAGAGGAAC
GGACGTCCCGTTATTTTCGATATCCTCTTCAAGATAGTATTGAACTCCTC
GGTGATCACGTTTTTGGCCGTGCTTTCTCTCTGTCGACTGGATAATACAC
GTTGACTATGAGTGATTTGGTGTTAGCCTCGCTTAATGTGTTGTATTTGT
CGCCCGAGTGGTCTAGTAGGTAACCTGCACATCTGCTAGTGCGGAGGTCG
TGAGTTCAATTCTTGGCTAAACCAGGGTTTTATTTGCTTCCGTACCGGAA
AGCGTGAGAACGGGAGTAGGTATAAGTCAAACATTGGTTGACGAGTTGTA
AGAGTGCTGAACTTGCAGCGCGATAAAAAGTCGTAAGACGTGAACCGTGG
AGAGATGGGGAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1477:106491..113452+

>mRNA_F-serratus_M_contig1477.3295.1 ID=mRNA_F-serratus_M_contig1477.3295.1|Name=mRNA_F-serratus_M_contig1477.3295.1|organism=Fucus serratus male|type=CDS|length=5052bp|location=Sequence derived from alignment at F-serratus_M_contig1477:106491..113452+ (Fucus serratus male)
ATGCAGGCCAAGGAGGTAACGGTGAAACCAACTAGAGGTTGGCTGTCGTT
GGTGAACGAGATTTTCTGGCGCCCTCCCCGGTCGGTGGCGGCATCCGATG
ACCCGCCTATATCTCAGCAGCGCAGTTCGTTTTTTCCATTCTTGCGTCAC
GTGATCGGAGACGAAGAGAAGGCAGTGCTAACAACGCTGGAGATTCCTTC
CTCGGGTTATAGTCGTGATACCAGTAATGGTAATAGTAAACCTCTACTCT
CCGGGGACGACGAAGATGCTTCTAGAGCGCCAGCTACACCCAGGACGCCT
CGCAGTTGCAACGTATCGGCCGACGCGACCGTGGAACATGCCGACTCTAA
GAATCGCAATTCTGATGCTTGCAGAGGCCGTGGGCCTGGCGGAAGCGGGA
GTGGAGAGGCGAGCATAGGTTTATCGCCTCGGAGGACGAGATCGAGCTCA
GTCTTGAAGGTGAAGGAGGAGAGGTCACTCCAGAAGGACTTGCCCTCCAT
ATGGACGTTTCTCAAGGACGCCGAAGGATGGGGCTTCGTTGGTAACAGCT
GGGACGTTCGCCCCCCTCGTGTTGAAGATACTTCAACCAGCCTCGTTGGT
GGATGGGAAAGAAGAGCCCTTGCACAGGAACAGATGCAGGCCAAGGAGGT
AACGGTGAAACCAACTAGAGGTTGGCTGTCGTTGGTGAACGAGATTTTCT
GGCGCCCTCCCCGGTCGGTGGCGGCATCCGATGACCCGCCTATATCTCAG
CAGCGCAGTTCGTTTTTTCCATTCTTGCGTCACGTGATCGGAGACGAAGA
GAAGGCAGTGCTAACAACGCTGGAGATTCCTTCCTCGGGTTATAGTCGTG
ATACCAGTAATGGTAATAGTAAACCTCTACTCTCCGGGGACGACGAAGAT
GCTTCTAGAGCGCCAGCTACACCCAGGACGCCTCGCAGTTGCAACGTATC
GGCCGACGCGACCGTGGAACATGCCGACTCTAAGAATCGCAATTCTGATG
CTTGCAGAGGCCGTGGGCCTGGCGGAAGCGGGAGTGGAGAGGCGAGCATA
GGTTTATCGCCTCGGAGGACGAGATCGAGCTCAGTCTTGAAGGTGAAGGA
GGAGAGGTCACTCCAGAAGGACTTGCCCTCCATATGGACGTTTCTCAAGG
ACGCCGAAGGATGGGGCTTCGTTGGTAACAGCTGGGACGTTCGCCCCCCT
CGTGTTGAAGATACTTCAACCAGCCTCGTTGGTGGATGGGAAAGAAGAGC
CCTTGCACAGGAACAGCTGCCTGCTTTTCTCGTCGAGCATCCTGAGCTGC
TGGAGAGGTATCGTCAGTGGCGGGAACGGATGTTTCGTGAGAACAGGGCT
CGCATCGACGGCGTTCGTGGTTCTAACCGAAGCACTCCGCGGAAATTCGA
CAGGAGCCCCTGTGGCGTGCGTAGCAGCAGACGGCGAGCTTCGCCGTCGC
CCCCCTCGCCGCACACGCCCGCGCCCACGCCGCCGCTTCTACCGCTGCCG
ATGGAGTCCCTCCCGCCTGCTGCGCCGGATGAAGAGAAGAACAAGGTGCG
AGGGTGGCAGCAGCAGCGGAAGCCTAGCGGCACGGGCTCCTTCAAGAGCG
GGACCGCCTCTGTATCCCGTACAACCCCTATCTCCGCCAGCAAAGGACCG
CGCGGTCGCTACGGCAGTGACTCGCCCCTCTGTTCCGGGTCGCCCGCGCG
GCGTACTCGTAGCCGAAGCGCCTGCGCGCTTGCTTCTCATTGTACCTCGG
AGCCGGGCGTGTGTTTAGAGGGCGGGTTGGAAGCGGAAATGATGAAACCT
ACGAGCGTACGCGAAAACCCAGTTATTTTGATCTCGGCTTCGGGCCGAGG
TCAAGCAGAGGTAGATAACGGCGGTGACAGCAGCATCCGGACACCCATCC
CCACCGGCCGCGGTCGAGTTGGAGTCTCGAGGGGGAGGGTCAAGAAGCCT
GAGGGTTCATCGGAGCAGCAGCTGAAGCATGTGCAGCGGGGATTGAGAAG
CGGTGGAACGAAGAGGAAAGCGCCTGTTGTCGAGGTGGGAAGGGATTGCG
CTTCGCCAGATCCTAGTGCTGCTGCTACTCCGACTGCTGCTTCTGGGGTG
GGAAGATCGAGGGCCAGGCACCGGGCGGGTGGGATCGTCGGCGGCGTTAG
AGCGAAAAGCTGCCTGCTTTTCTCGTCGAGCATCCTGAGCTGCTGGAGAG
GTATCGTCAGTGGCGGGAACGGATGTTTCGTGAGAACAGGGCTCGCATCG
ACGGCGTTCGTGGTTCTAACCGAAGCACTCCGCGGAAATTCGACAGGAGC
CCCTGTGGCGTGCGTAGCAGCAGACGGCGAGCTTCGCCGTCGCCCCCCTC
GCCGCACACGCCCGCGCCCACGCCGCCGCTTCTACCGCTGCCGATGGAGT
CCCTCCCGCCTGCTGCGCCGGATGAAGAGAAGAACAAGGTGCGAGGGTGG
CAGCAGCAGCGGAAGCCTAGCGGCACGGGCTCCTTCAAGAGCGGGACCGC
CTCTGTATCCCGTACAACCCCTATCTCCGCCAGCAAAGGACCGCGCGGTC
GCTACGGCAGTGACTCGCCCCTCTGTTCCGGGTCGCCCGCGCGGCGTACT
CGTAGCCGAAGCGCCTGCGCGCTTGCTTCTCATTGTACCTCGGAGCCGGG
CGTGTGTTTAGAGGGCGGGTTGGAAGCGGAAATGATGAAACCTACGAGCG
TACGCGAAAACCCAGTTATTTTGATCTCGGCTTCGGGCCGAGGTCAAGCA
GAGGTAGATAACGGCGGTGACAGCAGCATCCGGACACCCATCCCCACCGG
CCGCGGTCGAGTTGGAGTCTCGAGGGGGAGGGTCAAGAAGCCTGAGGGTT
CATCGGAGCAGCAGCTGAAGCATGTGCAGCGGGGATTGAGAAGCGGTGGA
ACGAAGAGGAAAGCGCCTGTTGTCGAGGTGGGAAGGGATTGCGCTTCGCC
AGATCCTAGTGCTGCTGCTACTCCGACTGCTGCTTCTGGGGTGGGAAGAT
CGAGGGCCAGGCACCGGGCGGGTGGGATCGTCGGCGGCGTTAGAGCGAAA
AGGCGCCGTTGTGACATTCGTCGGATCAAAGACCATGACAACGTTCGTCA
CGGCGTCAACCGAACCTCTAATCAGAAGGCGCCGTTGTGACATTCGTCGG
ATCAAAGACCATGACAACGTTCGTCACGGCGTCAACCGAACCTCTAATCA
GAAGAATGCCGACCAACAGCAAGTTCACGTCGGGGCCGCTTGTGTACAAC
CACCGGCTTCCGACGGCGAGACGCCCAAGGTGAAGATGGAATCCGAGGAC
CAGTTGTCCCCTCTGCCGTCTGAGGCGGCGGCGACCTCGAAGACTTCAAG
GTTGTCTTGTAAGAAAGGGGTGAGTCTCGGCGGCACCCCACGGCCGGCGC
GGCGGCCGATTTGGGAGAGTAATACGCCACGAACGCCCGATAGAGCCTCT
GCCCGAAAGGCTGGGGCAGAAGGCAGAGGGGATATGGATGGTAGGTGGGT
TGGTGGTAGTGACCCCTTGGCGCCGTACGACCGCATCGCGGAGGAGACGG
TCGATGACAGTGGACTGGTGGAGCTGCTGCATACCGGTCGGAGGGATGGA
TACCTGGACCTCCGGAGGTACAGGAAGCCCGGGTGGCCGCGACCGTTGAG
AGTCACAAGAGTGGAGGCAAGCCACGGCAAGCGAATGCCGACCAACAGCA
AGTTCACGTCGGGGCCGCTTGTGTACAACCACCGGCTTCCGACGGCGAGA
CGCCCAAGGTGAAGATGGAATCCGAGGACCAGTTGTCCCCTCTGCCGTCT
GAGGCGGCGGCGACCTCGAAGACTTCAAGGTTGTCTTGTAAGAAAGGGGT
GAGTCTCGGCGGCACCCCACGGCCGGCGCGGCGGCCGATTTGGGAGAGTA
ATACGCCACGAACGCCCGATAGAGCCTCTGCCCGAAAGGCTGGGGCAGAA
GGCAGAGGGGATATGGATGGTAGGTGGGTTGGTGGTAGTGACCCCTTGGC
GCCGTACGACCGCATCGCGGAGGAGACGGTCGATGACAGTGGACTGGTGG
AGCTGCTGCATACCGGTCGGAGGGATGGATACCTGGACCTCCGGAGGTAC
AGGAAGCCCGGGTGGCCGCGACCGTTGAGAGTCACAAGAGTGGAGGCAAG
CCACGGCAAGCGGTTCGAAGAGCACCTACTGCGCCTGCTGAAAGAAAACA
GGCGCGTTGAGGCCACGGTTTTCCTGCGCCGACTCGCGCACTTTGACCGC
CACCCTCCTCACCTAGTCGCGGCGGCTGAGAACGGTGGTTGCGGGAGATG
GGCCGCGTCCATCCCCTTGTGGTACCAAGAGCTCGCCGGGGTTGGCGGCG
GCGTGGAGGAGCTGGTGGACCTGACTCTTGGCGAGGCGGAGGTGGTGGAG
TGTCTCGACAACGAGCCCCTGGATTGCGTAATGATGGATGTTGTGAAGAA
GGAGCCGGACCCGTGCTTCGCAGAGATAGCCGGAGGGGTGAAGGGAATGG
AGACAGGCCGTGGCGACGACGTCGAGCCGACTGGTTCGAAGAGCACCTAC
TGCGCCTGCTGAAAGAAAACAGGCGCGTTGAGGCCACGGTTTTCCTGCGC
CGACTCGCGCACTTTGACCGCCACCCTCCTCACCTAGTCGCGGCGGCTGA
GAACGGTGGTTGCGGGAGATGGGCCGCGTCCATCCCCTTGTGGTACCAAG
AGCTCGCCGGGGTTGGCGGCGGCGTGGAGGAGCTGGTGGACCTGACTCTT
GGCGAGGCGGAGGTGGTGGAGTGTCTCGACAACGAGCCCCTGGATTGCGT
AATGATGGATGTTGTGAAGAAGGAGCCGGACCCGTGCTTCGCAGAGATAG
CCGGAGGGGTGAAGGGAATGGAGACAGGCCGTGGCGACGACGTCGAGCCG
ACTGGCGGGCACGACCAGGTGACCTCGTCCGTCGGCGTAGGCATCGCCGT
ACTACCTGTCAAGACGGAGGTACAGTAGGCGGGCACGACCAGGTGACCTC
GTCCGTCGGCGTAGGCATCGCCGTACTACCTGTCAAGACGGAGGTACAGT
AG
back to top