mRNA_F-serratus_M_contig1477.3294.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1477.3294.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI) HSP 1 Score: 427 bits (1099), Expect = 6.020e-131 Identity = 279/616 (45.29%), Postives = 348/616 (56.49%), Query Frame = 2
Query: 536 GLTLTGFLRVEVVSLAEAEITIRPGKERGIELIRQREEAAEADRKEKDRLVAEEKLSLKETIEVKGEDKERSGGETMSKAKDAKQTIAGDKQLEKAMLEREKEAAAKAVKKSRVDIAQMRTE------GKSFIFTAEYKNVAPMGLTFDLANPRAIVSEVVAGGSSEAAGVRVGDHLVRVNDRDTSEMKPAMAIKFLQRAEWPRVLTLLTPEKKEESGGNQPLLFNLVVTEPTIARGAYLIQAPGEWGYL--GAKQRLEPGTWSCEFSPMVLADPAPACQQDLHL-SVEKESGGGDPLAIVLVKRGLCTFVEKAKNVQFALQRSSERSMIVEAKSSSRKPTLIRGDEVAITTHAAAAPVSFEDTSNYGTGDSDGGGNKGG---------MVLLNGEDALADMPAGNLVTDDIRIPVAMVSQRNGSSLETLLSWGVDTKAAIAPVGACPFQAFLGGSV---GRARKEDDNGGLFLVHSKDAGEAEFDYRQAQYGPGIIDVAGTAPYGMTVANPLDGCDHKAYKVRVTGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETTLRVMADPGEVEKARIPTVMVSAKAGRFL-ISAAGDDHSPMLGRFARESYDAER 2317
G L GFL+VE+V L AE+T RPG+ R ELI+QR +AA A+RKEK+R +AE K L+ GK F FTAEYK VAPMGLTFDLAN A+VSEV AGG S+ AGV++GDHLVRVN+RDTSEMKP A+K RG YL+QAP +WG L +++ + +WSCE M L+DP PACQ++L L S + G G I LVKRG+CTFVEKAKNVQ A+ + + + + + T + G++V +T A MVLLNG+DALADMPAGNL+TDD+ IPVAM+S+ NGSS+E LLSWGV+ +AAI+P GACP + + +ARK+DD+GG FLV SK G EF+YR A+YGPG+ D A +P + VA+P+DGC+ KAYKVRV+GM V+RGGCSF+MKTL AQR A GVII NTAETTLRVMAD G+ EKA IPTVMVSA AG FL +AAG SP+LGRF RE+++A R
Sbjct: 198 GFRLKGFLKVELVGLDGAEVTFRPGEARIAELIKQRNDAAAAERKEKERALAEAKALLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKEFTFTAEYKEVAPMGLTFDLANLLAVVSEVTAGGLSDIAGVKIGDHLVRVNERDTSEMKPTAALKV---------------------------------------RGEYLMQAPKDWGGLRGASEEDVAQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDGREPVIALVKRGVCTFVEKAKNVQVAVLNA-----VADTAAPPQDTTALAGEDVITSTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVLLNGDDALADMPAGNLLTDDVNIPVAMISRGNGSSVEALLSWGVEVRAAISPYGACPLPSPTPSADEQGAKARKDDDDGGRFLVLSKAQGGREFNYRLARYGPGVGD-AEASPVAIAVADPIDGCEDKAYKVRVSGMFAVVERGGCSFSMKTLAAQRAGALGVIIANTAETTLRVMADQGDGEKALIPTVMVSATAGGFLSAAAAGSSRSPILGRFTREAFEARR 768
BLAST of mRNA_F-serratus_M_contig1477.3294.1 vs. uniprot
Match: A0A835ZE01_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE01_9STRA) HSP 1 Score: 206 bits (523), Expect = 8.020e-52 Identity = 165/517 (31.91%), Postives = 230/517 (44.49%), Query Frame = 2
Query: 887 QMRTEGKSFIFTAEYKNVAPMGLTFDLANPRAIVSEVVAGGSSEAAGVRVGDHLVRVNDRDTSEMKPAMAIKFLQRAEWPRVLTLLTPEKKEESGGNQPLLFNLVVTEPTIARGAYLIQAPGEWGY---LGAKQRLEPGTWS-------CEFSPMVLADPAPAC---QQDLHLS-----VEKESGGGDPLAIVLVKRGLCTFVEKAKNVQFALQRSSERSMIVEAKSSSRKPTLIRGDEVAITTHAAAAPVSFEDTSNYGTGDSDGGGNKGGMVLLNGEDALADMPAGNLVTDDIRIPVAMVSQRNGSSLETLLSWGVDTKAAIAPVGACPFQAF------LGGSVGRARKEDDNGGLFLVHSKDAGEAEFDYRQAQYGPGIIDVAGTAPYG----MTVANPLDGCDHKAYKVRVTGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETTLRVMADPG------------EVEKARIPTVMVSAKAGRFLISAAGDDHSPM----LGRFARESY 2305
+ R G+ F++T E+K PMG+TFDLAN A++ +V G ++ G+R GD LV VN DTS M P A + + RAEWPR L+L PE ++ + P LV+ +P + RG Y ++AP +WG L A C +++ DP C QQ + L+ + + GG A+V+V+RG C FV+KA NVQ TL+ G +A +V+ N ++ L DMPAGNL T I IPVAM+ + + LE +L G+ +A G C + G R R D GG V S G EFD+ A YGP AP G + VA+P D CD +A VRV G V +RG CSF+MKTL Q+ A G+I+ N A E ++ARIP+ M S+ G + + H+ + L RF E Y
Sbjct: 250 EKRARGEGFVYTVEFKEAGPMGITFDLANTTAVIGDVARGSAAATLGIRAGDQLVEVNGVDTSGMGPERAGREVMRAEWPRRLSLTVPEVEKPAS---PRDMELVILQPLLVRGVYALRAPNDWGADLPLAAVDNDXXXXXXXXXXXAVCSGVSVLVTDPDSGCATVQQAVSLAGGNFTAQADLSGG---AVVIVRRGSCPFVDKASNVQ----------------------TLLGGAXXXXXXARSA------------------------VVVANTDNELVDMPAGNLPTAGITIPVAMMRKEDSFGLEQVLGVGMPCTGLLAAPGRCAAPSLPRPERGADGKPVRNRPATDVGGRLAVVSA-RGAREFDWHLALYGP-------HAPNGTVVNVVVASPSDACDAEALMVRVRGSFVIAERGVCSFSMKTLALQKAGALGMILTNNAAXXXXXXXXXXXXXXXXXXXXEEEAKQARIPSAMASSALGAW-----AEAHARLGGVALARFFYEDY 701
BLAST of mRNA_F-serratus_M_contig1477.3294.1 vs. uniprot
Match: A0A6V1PI75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PI75_HETAK) HSP 1 Score: 144 bits (362), Expect = 6.170e-33 Identity = 87/232 (37.50%), Postives = 126/232 (54.31%), Query Frame = 2
Query: 1649 MVLLNGEDALADMPAGNLVTDDIRIPVAMVSQRNGSSLETLLSWGVDTKAAIAPVGAC------PFQAFLGGSVGRARKEDDNGGLFLVHSKDAGEAEFDYRQAQYGPGIIDVAGTAPYGMTVANPLDGCDHKAYKVRVTGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETT--LRVMADPGEVEKARIPTVMVSAKAGRFLISAAGDDHSPMLGRFARESYDAERG 2320
+V++N +D + DMPAG + TDDI P+ M+ + +G ++E +LS G AA+AP C P Q + KED GGL L+ FD+ A +GP D Y A+P DGCD + ++VRV G + V+RGGCSF+ KT+VAQ L A V ++N + T RVMA P + + RIPTVM+S +AG + AA ++GRF ++ + G
Sbjct: 215 IVVVNQDDTVMDMPAGRMTTDDISAPIVMIGKTDGENIEKVLSMGYHVTAALAPQHLCDQVVSSPLQQQ---NKPPRMKEDSGGGLILMSP--GFSKTFDFADALFGPPAKD---NIVYQFVYADPNDGCDPEKFQVRVRGAVAVVERGGCSFSQKTVVAQALGAAAVALLNNEDQTGVFRVMAPPEDEDIIRIPTVMISKRAGEHIREAAKKKEQ-IIGRFVHTEFEGQYG 437
BLAST of mRNA_F-serratus_M_contig1477.3294.1 vs. uniprot
Match: A0A8J2SDR5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDR5_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 4.360e-17 Identity = 128/513 (24.95%), Postives = 189/513 (36.84%), Query Frame = 2
Query: 884 AQMRTEGKSFIFT----AEYKNVAPMGLTFDLANP--RAIVSEVVAGGSSEAAGVRVGDHLVRVN--DRD-----------TSEMKP----AMAIKFLQRAEWPRVLTLLTPEKKEESGGNQPLLFNLVVTEPTIARGAYLIQAPGEWGYLGAKQRLEPGTWSCEFSPMVLADPAPACQQDLHLSVEKESGG---------GDPLAIVLVKRGLCTFVEKAKNVQFALQRSSERSMIVEAKSSSRKPTLIRGDEVAITTHAAAAPVSFEDTSNYGTGDSDGGGNKGGMVLLNGEDALADMPAGNLVTDDIRIPVAMVSQRNGSSLETLLSWGVDTKAAIAPVGACPFQAFLGGSVGRARKEDD----NGGLFLVHSKDAGEAEFDYRQAQYGPGIIDVAGTAPYGMTVANPLDGCDHKAYKVRVTGMLVAVKRGG-CSFNMKTLVAQRLRAKGVIIINTAETTLRVMADPGEVEKARIPTVMVSAKAGRFLISAAGDDHSPMLGRFARESYDA 2311
AQ R F F AE K P+G+TF +V+ V AG + AGV GD +V + RD T+ ++P A ++ +++ WP + + PL + V P + RG W ++ ++ +VLADP C L G D L KRG C+FV+KA+ +Q + G+++ N E MPAG + TDDI + VAMV G LE L W A+A P + R ++D NG + +D EA F R A +GP + A AP G+ A P C + R+ G+ +RGG C F K VA++L+A ++++N+ E +L M P +A + +MV A AG L + A G AR +YDA
Sbjct: 292 AQKRDAAARFEFLPLEFAEAKG--PLGMTFGAGKSVDATLVTHVDAGKRAARAGVLRGDEVVELRWLQRDDDGAQKEVVVNTTVVRPERVTAHVMEAIKKRWWPLTFVVFRAHEVGSVEAEAPLFVS--VAAPVVLRGDQGAVTVAPWAATPVREDVD----------LVLADPLDGCAGSLLAEPAPVEDGRVKLGAPPPSDRKRFALAKRGGCSFVDKARALQAHVD---------------------------------------------------------GVLIYNTEADPVKMPAGGVPTDDISVVVAMVGADQGQRLERALRWPDRDAVALALATTMP-SSDAPHHPDRDFDDEDAPPVNGNVTFQCGRDVVEARF--RSAAFGPLL---APHAPLGVGFAVPPPLCALSGVERRLAGLAAVAQRGGGCGFQEKARVAEKLQAAALVVVNS-EDSLTTMTLPEPDARASVAALMVGASAGAALEAMAAGACGRAAGVLARLAYDA 726
BLAST of mRNA_F-serratus_M_contig1477.3294.1 vs. uniprot
Match: A0A7S2RW17_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RW17_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.800e-8 Identity = 111/447 (24.83%), Postives = 176/447 (39.37%), Query Frame = 2
Query: 1028 VRVGDHLVRVNDRDTSEMKPAMAIKFLQRAEWPRVLTLLTPEKKEESGGNQPLLFNLVVTEPTI-----ARGAYLIQAP-----GEWGYLGAKQRLEPGTWSCEFSPMVLADPAPACQQDLHLSVEKESGGGDPL---AIVLVKRGLCTFVEKAKNVQFALQRSSERSMIVEAKSSSRKPTLIRGDEVAITTHAAAAPVSFEDTSNYGTGDSDGGGNKGGMVLLNGEDALADMPAGNLVTD---DIRIPVAMVSQRNGSSLETLLSWG---VDTKAA-IAPVGACPFQAFLGGSVGRARKEDDNGGLF-----------LVHSKDAG-EAEFDYRQAQYGP---GIIDVAGTAPYGMTVA-NPLDGCDHKAYKVRVTGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETT---LRVMADPGEVEKARIPTVMVSAKAGRFLIS 2251
V +GD LV +N + + M +++ ++ P +L T +++ G + L + T+P G +I +P E+ A P +C + L++P +Q L SG + L ++VLV RG+C+FV K +NVQ S GG KG +V+ + +A MPAG + I IP M+S ++G +L+ LLS G V K A +G+ Q + ++ + +G L LV S G A+F A +GP G V P + ++ P +GC+ A G +V V RG CSF+ K + Q+ G+II+N+ L V P E +IPT MV++ +G L S
Sbjct: 9 VSLGDRLVGINKKRFTGMTLEASVELIRNTPPPFILKFYT--ERDVDGDDISLDDLKLATKPQEISHLGTEGQLIIASPPILAGSEFTITFASFGAPP---ACLLQNLTLSNP----EQGKPLMACSASGLSNDLPENSLVLVLRGVCSFVTKTRNVQ-----------------------------------------------------SKGG--KGAIVVTRDFEPIAVMPAGAGELERGTSIDIPAGMLSWKDGLALQALLSNGPLKVLLKGANCQDLGSTLDQGAQQSEIDYSKMKTKDGRLIDRQKARSTVELLVWSSSNGMTAKFYGVFALFGPKYEGFPSVVDAKPGSLRLSPEPHNGCEDFAASSEFQGQIVVVYRGICSFSSKAINVQKAGGVGMIIVNSEPNLSDLLEVAGPPDEASLVKIPTAMVNSTSGEQLKS 391
BLAST of mRNA_F-serratus_M_contig1477.3294.1 vs. uniprot
Match: A0A7S2CH50_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH50_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.960e-6 Identity = 78/322 (24.22%), Postives = 127/322 (39.44%), Query Frame = 2
Query: 1316 PMVLADPAPACQQDLHLSVEKESGGGDPLAIVLVKRGLCTFVEKAKNVQFALQRSSERSMIVEAKSSSRKPTLIRGDEVAITTHAAAAPVSFEDTSNYGTGDSDGGGNKGGMVLLNGEDALADMPAGNLVTDDIRIPVAMVSQRNGSSLETLLSWGVDTKAAIAPVGACPFQAFLGGSVGRARKEDDNGGLFLVHSKDAG-------EAEFDYRQAQYGPGIIDVAGTAPYGMTVANPLDGCDHKAYKV----RVTGMLVAVKRGGCSFNMKTLVAQRLRAKGVIIINTAETTLRVMADPG-EVEKARIPTVMVSAKAGRFL 2245
PM+LADP AC L+ + E + AIV+ KRG CTF K KNV + + AA +V++N E P + D+++ V+MV++ G+ L + + G+ AA+ P+ C Q+ ++ R + + G +A+ +Y QA +G I Y + A+P + C+ + + +V G V ++RGGC F K + A A VII+N+ + R +P + K IP +MV+ K G L
Sbjct: 156 PMILADPPDACAAVLNNAEEIKKYD----AIVVAKRGTCTFGTKGKNV--------------------------------LASGGAA------------------------LVIVNNEPGNMHAPGPD--AHDLKLSVSMVAEDEGNLLISSMEKGMALMAAMVPI-HCAAQSETVQTMDLCRGSTEADRAIANSIIEGGWVKGLPGDAKHEYLQATFGTKIPTAK---KYEIVHASPPNACNEGSELLDNAEQVAGKAVVIERGGCQFLEKAMKAWSSNASMVIIVNSETSINRYGCEPRWKGLKVDIPALMVTDKGGEAL 411 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1477.3294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1477.3294.1 >prot_F-serratus_M_contig1477.3294.1 ID=prot_F-serratus_M_contig1477.3294.1|Name=mRNA_F-serratus_M_contig1477.3294.1|organism=Fucus serratus male|type=polypeptide|length=630bp MSVADNCQSADIAECAALSDPTEDKAHAAEGEDLGLTLTGFLRVEVVSLAback to top mRNA from alignment at F-serratus_M_contig1477:39845..74523+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1477.3294.1 ID=mRNA_F-serratus_M_contig1477.3294.1|Name=mRNA_F-serratus_M_contig1477.3294.1|organism=Fucus serratus male|type=mRNA|length=34679bp|location=Sequence derived from alignment at F-serratus_M_contig1477:39845..74523+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1477:39845..74523+ >mRNA_F-serratus_M_contig1477.3294.1 ID=mRNA_F-serratus_M_contig1477.3294.1|Name=mRNA_F-serratus_M_contig1477.3294.1|organism=Fucus serratus male|type=CDS|length=3780bp|location=Sequence derived from alignment at F-serratus_M_contig1477:39845..74523+ (Fucus serratus male)back to top |