mRNA_F-serratus_M_contig1472.3284.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1472.3284.1
Unique NamemRNA_F-serratus_M_contig1472.3284.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1472.3284.1 vs. uniprot
Match: D8LHW2_ECTSI (HP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW2_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.130e-13
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  383 GDGCCFRSSALGKALVRVGAEQAQKSSSALGTRGGEGTTPYRYRRLVGVGGC-WPPDVQSAHRERWLAPAEFEAVFEMSFKAFAGLPWWKQRTLKQEVCLF 682
            GDG   R+SA    L+RVG+          G   G GTTP+RYRRL+G+    WP  V  A RE WL P EFEAVF MSF  F  LP WK+  LK+E+ LF
Sbjct:  240 GDGNPARASAE-PPLLRVGS----------GGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 329
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BLAST of mRNA_F-serratus_M_contig1472.3284.1 vs. uniprot
Match: A0A6H5L198_9PHAE (HP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L198_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.110e-12
Identity = 49/101 (48.51%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:  383 GDGCCFRSSALGKALVRVGAEQAQKSSSALGTRGGEGTTPYRYRRLVGVGGC-WPPDVQSAHRERWLAPAEFEAVFEMSFKAFAGLPWWKQRTLKQEVCLF 682
            GDG   R+SA     +RVG+          G   G GTTP+RYRRL+G+    WP  V  A RE WL P EFEAVF MSF  F  LP WK+  LK+E+ LF
Sbjct:  598 GDGTSSRASAE-PPFLRVGS----------GGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 687
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1472.3284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHW2_ECTSI6.130e-1349.50HP domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L198_9PHAE3.110e-1248.51HP domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1472contigF-serratus_M_contig1472:221415..223483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVillin/Gelsolin
Ec32 orthologEc-18_000720.1
Exons1
Model size2069
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1472.3284.1prot_F-serratus_M_contig1472.3284.1Fucus serratus malepolypeptideF-serratus_M_contig1472 221551..222099 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.5456202-UTR-F-serratus_M_contig1472:221414..2215501622929449.5456202-UTR-F-serratus_M_contig1472:221414..221550Fucus serratus maleUTRF-serratus_M_contig1472 221415..221550 +
1690962858.1123996-UTR-F-serratus_M_contig1472:221414..2215501690962858.1123996-UTR-F-serratus_M_contig1472:221414..221550Fucus serratus maleUTRF-serratus_M_contig1472 221415..221550 +
1622929449.5671291-UTR-F-serratus_M_contig1472:222099..2234831622929449.5671291-UTR-F-serratus_M_contig1472:222099..223483Fucus serratus maleUTRF-serratus_M_contig1472 222100..223483 +
1690962858.1311116-UTR-F-serratus_M_contig1472:222099..2234831690962858.1311116-UTR-F-serratus_M_contig1472:222099..223483Fucus serratus maleUTRF-serratus_M_contig1472 222100..223483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.5567763-CDS-F-serratus_M_contig1472:221550..2220991622929449.5567763-CDS-F-serratus_M_contig1472:221550..222099Fucus serratus maleCDSF-serratus_M_contig1472 221551..222099 +
1690962858.1233022-CDS-F-serratus_M_contig1472:221550..2220991690962858.1233022-CDS-F-serratus_M_contig1472:221550..222099Fucus serratus maleCDSF-serratus_M_contig1472 221551..222099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1472.3284.1

>prot_F-serratus_M_contig1472.3284.1 ID=prot_F-serratus_M_contig1472.3284.1|Name=mRNA_F-serratus_M_contig1472.3284.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MTSDFYLGSFAGVKHAPFGGKSGACRRPGVEGTELLVEVFGTDDPPVGLA
DTSAIVGPAARIAALPPAELARLVNIERRASDGDGCCFRSSALGKALVRV
GAEQAQKSSSALGTRGGEGTTPYRYRRLVGVGGCWPPDVQSAHRERWLAP
AEFEAVFEMSFKAFAGLPWWKQRTLKQEVCLF*
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mRNA from alignment at F-serratus_M_contig1472:221415..223483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1472.3284.1 ID=mRNA_F-serratus_M_contig1472.3284.1|Name=mRNA_F-serratus_M_contig1472.3284.1|organism=Fucus serratus male|type=mRNA|length=2069bp|location=Sequence derived from alignment at F-serratus_M_contig1472:221415..223483+ (Fucus serratus male)
CGCGGAGCCGAGAGAGTCGGAAACGCTTCCTCCTTCGCCTTTTTTTTCAG
ATCCCTTCTCGGGTCAGCACAGCCCCTGCGAGGAAGCTCCACTCGTCGGC
GCCATCCGAGAGGAGGATGAATCAACCGACGCGTGTATGACAAGTGACTT
TTATCTTGGTAGCTTCGCGGGTGTGAAGCACGCGCCGTTTGGAGGAAAAA
GCGGTGCCTGTCGCCGACCCGGGGTGGAAGGGACAGAGTTGCTGGTCGAG
GTTTTCGGGACTGACGATCCTCCGGTCGGTCTCGCCGACACCTCGGCGAT
CGTGGGCCCTGCCGCCCGAATTGCCGCACTGCCACCGGCCGAGCTAGCCC
GGCTCGTCAATATCGAAAGGCGCGCCTCAGACGGAGACGGCTGTTGCTTC
AGGAGCAGCGCTCTCGGCAAAGCGCTGGTGAGGGTTGGCGCAGAGCAAGC
GCAAAAGTCCTCCTCGGCGTTGGGAACAAGGGGGGGAGAGGGAACCACCC
CATACCGCTACCGGCGCCTGGTTGGCGTTGGAGGTTGCTGGCCGCCCGAC
GTACAGTCGGCGCATCGCGAACGATGGCTGGCGCCCGCCGAATTCGAGGC
GGTTTTTGAGATGAGTTTTAAGGCGTTCGCGGGGCTTCCATGGTGGAAGC
AGCGCACTCTCAAGCAAGAGGTTTGCTTGTTCTAAGGAAGGCTTTCTTTT
TTTTACCTCGACTATTTGCGCCGCGTGGTGTGATCGCCGCGGTCAGCTCA
CGCTTCAGCTGGGATGGTTGGGAAGGGTCCCAAGTTGTTTTCTCTCTTAG
TGAAAAATGGTACCATATGTTTCTATGCCGGCCGTTTCGATCACTCCGAA
GAGACTTGTTGATTTCGTGTGACAAGGCATGGGACAGAAACTGCACACCT
AATCAACTGTTTGTCTCGCCCTTTCTGGACGTTCTGGTTGGATGTTAGAT
TAAAATACAGTAGTAGGCAGCGCGAACGCGACGAGCTTTGCTGGTTTTCG
CACGCCTTTTCATGCATTTTGATACCTATCCCACTCGCTTTGTGCGTCGC
GCGCTTCTGTAGTTTTTTATACGTAACGTACTGGTATGCCTGATGGTTTC
CTTCATCATCCTTGTATTCGTTACAGTAGTGACTTGATTTTAGTGACTTG
CTTGGTAAGGAAGTGCTCGTAGGTGTCTTGATTTTAGTGACTTGCTTGGT
AAGGAAGTGCTTGCTCGTAGGTGTCTTGATTTTAGTGACGGCAGATGGAG
CGAAGAAATGATGTCCATCAGTTGGAAAACGTTGAGGGTAATTTCTGGAC
GACGATGAGTAGTCGTGTAATCCGAAGCATTCAGACGGCGCACAGCGAGA
CGCCGGCGGATGTTGTGGACGACGATTGACGTCCGTCCGTCCGGCCGCGT
TTCCCTTCCGTCCACTTCGGTGTGGTGTGTTGAGGCAAATCCGACGGCCG
CAATGCCGTAAGCAAACGCTCAGCAGTCAGGCGCGAATGATGATGAACTT
CCGACTTGAATCTGCTTTCGAGACACGAATGATTGGCAAGACGATGAAGC
AAGGTTACGTAGGTACGGCCTGTACTGCTGGTGGTTTTATGGTTTTCTAC
AGATTTTACCGGCGTTATGGTCCAGTTCTTTGTTCTACGACACCGGAAAA
ATGCCCCGTGTGCGCTTCCCCGCGAGAGCGGGATGAAGAGGTTGCGATTT
CAAAAACGCCTCTGTTGGGTGTGGCCTTAGGTCAGAGACGGGTAACAAGG
AGGCCCTACCTCTTTCCGCTACTGCCGTTGTTGCGGACAGCTGCAGAGTT
GAGGTCGACGAAGAGAATCGTTTAACGATTGGGGGGAGGGGGGGATTCGA
CGATTCCGTCCCCTGGGATGTCACCAGAACAGCCCCTACTGGGGGCAGGA
CTACATGGTCGGTAAACTTGGTGCGAATTGAATTATTTTCACAAGAGATT
GGTCAAATATGTCCCCGGGAGGGGATATTTTGTGTTGTCCCCTCCCAAAA
CGGGGGAGGGAATCCAACATCCCCCCCCCCCCCCCTCCCATTTGTTGTAC
GACTCCTTAGTCGAGACTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1472:221415..223483+

>mRNA_F-serratus_M_contig1472.3284.1 ID=mRNA_F-serratus_M_contig1472.3284.1|Name=mRNA_F-serratus_M_contig1472.3284.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig1472:221415..223483+ (Fucus serratus male)
ATGACAAGTGACTTTTATCTTGGTAGCTTCGCGGGTGTGAAGCACGCGCC
GTTTGGAGGAAAAAGCGGTGCCTGTCGCCGACCCGGGGTGGAAGGGACAG
AGTTGCTGGTCGAGGTTTTCGGGACTGACGATCCTCCGGTCGGTCTCGCC
GACACCTCGGCGATCGTGGGCCCTGCCGCCCGAATTGCCGCACTGCCACC
GGCCGAGCTAGCCCGGCTCGTCAATATCGAAAGGCGCGCCTCAGACGGAG
ACGGCTGTTGCTTCAGGAGCAGCGCTCTCGGCAAAGCGCTGGTGAGGGTT
GGCGCAGAGCAAGCGCAAAAGTCCTCCTCGGCGTTGGGAACAAGGGGGGG
AGAGGGAACCACCCCATACCGCTACCGGCGCCTGGTTGGCGTTGGAGGTT
GCTGGCCGCCCGACGTACAGTCGGCGCATCGCGAACGATGGCTGGCGCCC
GCCGAATTCGAGGCGGTTTTTGAGATGAGTTTTAAGGCGTTCGCGGGGCT
TCCATGGTGGAAGCAGCGCACTCTCAAGCAAGAGGTTTGCTTGTTCTAAA
TGACAAGTGACTTTTATCTTGGTAGCTTCGCGGGTGTGAAGCACGCGCCG
TTTGGAGGAAAAAGCGGTGCCTGTCGCCGACCCGGGGTGGAAGGGACAGA
GTTGCTGGTCGAGGTTTTCGGGACTGACGATCCTCCGGTCGGTCTCGCCG
ACACCTCGGCGATCGTGGGCCCTGCCGCCCGAATTGCCGCACTGCCACCG
GCCGAGCTAGCCCGGCTCGTCAATATCGAAAGGCGCGCCTCAGACGGAGA
CGGCTGTTGCTTCAGGAGCAGCGCTCTCGGCAAAGCGCTGGTGAGGGTTG
GCGCAGAGCAAGCGCAAAAGTCCTCCTCGGCGTTGGGAACAAGGGGGGGA
GAGGGAACCACCCCATACCGCTACCGGCGCCTGGTTGGCGTTGGAGGTTG
CTGGCCGCCCGACGTACAGTCGGCGCATCGCGAACGATGGCTGGCGCCCG
CCGAATTCGAGGCGGTTTTTGAGATGAGTTTTAAGGCGTTCGCGGGGCTT
CCATGGTGGAAGCAGCGCACTCTCAAGCAAGAGGTTTGCTTGTTCTAA
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