mRNA_F-serratus_M_contig1465.3268.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1465.3268.1
Unique NamemRNA_F-serratus_M_contig1465.3268.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1465.3268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1465contigF-serratus_M_contig1465:142330..144572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1682
Cds size1539
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1465.3268.1prot_F-serratus_M_contig1465.3268.1Fucus serratus malepolypeptideF-serratus_M_contig1465 143034..144572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929446.7405818-UTR-F-serratus_M_contig1465:142329..1424601622929446.7405818-UTR-F-serratus_M_contig1465:142329..142460Fucus serratus maleUTRF-serratus_M_contig1465 142330..142460 +
1690962856.6072195-UTR-F-serratus_M_contig1465:142329..1424601690962856.6072195-UTR-F-serratus_M_contig1465:142329..142460Fucus serratus maleUTRF-serratus_M_contig1465 142330..142460 +
1622929446.7589884-UTR-F-serratus_M_contig1465:143023..1430331622929446.7589884-UTR-F-serratus_M_contig1465:143023..143033Fucus serratus maleUTRF-serratus_M_contig1465 143024..143033 +
1690962856.6151617-UTR-F-serratus_M_contig1465:143023..1430331690962856.6151617-UTR-F-serratus_M_contig1465:143023..143033Fucus serratus maleUTRF-serratus_M_contig1465 143024..143033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929446.7702975-CDS-F-serratus_M_contig1465:143033..1445721622929446.7702975-CDS-F-serratus_M_contig1465:143033..144572Fucus serratus maleCDSF-serratus_M_contig1465 143034..144572 +
1690962856.6263585-CDS-F-serratus_M_contig1465:143033..1445721690962856.6263585-CDS-F-serratus_M_contig1465:143033..144572Fucus serratus maleCDSF-serratus_M_contig1465 143034..144572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1465.3268.1

>prot_F-serratus_M_contig1465.3268.1 ID=prot_F-serratus_M_contig1465.3268.1|Name=mRNA_F-serratus_M_contig1465.3268.1|organism=Fucus serratus male|type=polypeptide|length=513bp
MPLRRRLSHSIDQSRPSDGTREHNDSGNLSGSDPPVSPTGSIESLPNNNS
SSSGDSGGGGVGGGGRSSRSSSTERESTATDHVDHPVTPHAFSLDSAGTA
GDPDAHERLTLPRPWSVAEPSRPPLDDAATDALAVRRHVTFLNALARIGR
ENSSLRDQLGMRSTRSTEEEDGPPPVVAATAAPAPPELTALRNSQLSSAT
PTETALGGCGTARNGNDDRISEGSGNSNGNDNGNDNSSNSATTPVAMPST
RPPMTVSEMVRERRHRQQREPQQQPQSQQQPQPEQEDAPQRISPPLPLQP
AIALADMEDAARVPNFSIAGSGRRLPRFRRHQRSGNAASTESTRESTESA
RRSTESTRRSAAIVDGIPRAPAPETRGFRWARPSPVDPATDTSTDGWRIA
SDIQTGFSLTNPRPDRAMSPDASGPDGSMFTTPSVDLSGRRFSFRRVPVG
AGVDAHSNGTSNDSAAPMRRPRSRRVPRRRNSGWLDDESDRLLLASIPGS
GGASGAATNSDGG
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mRNA from alignment at F-serratus_M_contig1465:142330..144572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1465.3268.1 ID=mRNA_F-serratus_M_contig1465.3268.1|Name=mRNA_F-serratus_M_contig1465.3268.1|organism=Fucus serratus male|type=mRNA|length=2243bp|location=Sequence derived from alignment at F-serratus_M_contig1465:142330..144572+ (Fucus serratus male)
CCCTCATCCCATACCTCAAATAAGTTGTGAACTCTGTGCCTACAGGGGTG
GGGCAGAGCCTACAACTCGAGTCTCTCGCATCATCTTTCTGCGGGATAGT
GACGAGATTCTTCCTGTCTCGCGGGGGCAAGGTAGGCCTTCGATATGACG
GCTTCCCTTATCTAGAGTCCGATGCGTAATTGTGTGATTCTTGTGTTCTG
TTCCTTCGATTTCTTCAAGACTTGTCTATATAACGCCTACCAGTAGTTCG
CAAGACCACCCATGATGTTCGTCCCTAGGGGGGTGTTCACCCCAAGACCA
AAATACCGGGCTTCTCCCTTTTTCTCACTGTGCTACCCGGTCGTTTCGCG
TTCGAAAGATCTCGTATCTCGTCGAAGGGACGGTTATTGGCGATGAGTGA
TAGTGATGCTTGGTCCAGTTCGTGAGGGATCGAAGTCAGAGGGCACGAAC
GTTTTCCCGCGCGACTCGCTTTTTGGCTGAAATTTGTGTTTCGATAAAGA
AGCGTGTAGAAAAGCAAGACAGACTGTGTACAGGTACAGGTTAAATAACT
TGTCACATGCATAAAAACTACGTTGATTTCGGTATAAGTTCCCAAAATAA
TAATCTCTCACGGTGTTTTGGCGGACCCTGTTCTGTGCTTCGTTGACCTC
GCTGCTTTCCTGCGCGTATCTGTACCGCTTGCTCTGACCTTCAGTTTCCC
TACCATGCCTTTGAGGAGAAGGTTGTCGCACTCTATTGACCAGTCGCGTC
CGTCTGACGGGACTCGCGAGCACAACGATAGCGGCAACCTTTCCGGGTCC
GACCCTCCTGTAAGCCCCACCGGCTCCATTGAAAGCCTTCCCAACAACAA
CAGCAGCAGCAGCGGAGATAGCGGCGGCGGAGGTGTTGGTGGTGGCGGCA
GGAGCAGCCGTAGCAGCAGCACCGAGCGCGAATCTACTGCTACGGACCAT
GTTGATCATCCCGTCACGCCACACGCCTTCTCCCTCGACTCTGCGGGAAC
CGCGGGAGACCCCGATGCTCACGAACGGCTGACGCTACCCCGGCCCTGGT
CTGTCGCGGAGCCTTCTCGCCCTCCTCTGGACGATGCGGCCACAGACGCT
CTTGCTGTCCGTCGTCACGTCACTTTCCTCAACGCTTTGGCCAGGATTGG
GCGGGAAAACTCCAGCCTTCGCGACCAGCTGGGTATGAGGTCCACCCGCA
GCACTGAGGAAGAGGACGGGCCGCCGCCCGTTGTCGCTGCAACTGCTGCT
CCAGCCCCTCCTGAGTTGACTGCTCTTCGAAACTCTCAACTTTCTAGTGC
CACACCCACCGAAACGGCTTTGGGAGGTTGTGGTACCGCCAGAAACGGCA
ATGATGACAGGATAAGTGAAGGAAGCGGCAACAGCAACGGTAACGATAAC
GGCAATGACAACAGCAGCAACAGCGCGACTACCCCTGTTGCGATGCCTTC
GACAAGGCCGCCCATGACCGTGAGTGAGATGGTTCGGGAGAGGCGTCATC
GTCAGCAGCGAGAGCCGCAGCAGCAGCCGCAGTCGCAGCAGCAGCCACAG
CCGGAGCAGGAAGATGCTCCCCAGCGAATTTCACCGCCGCTTCCACTTCA
GCCCGCGATTGCCCTAGCTGACATGGAGGACGCTGCTCGCGTTCCTAACT
TCTCGATCGCTGGCAGCGGGCGTAGGTTACCTCGTTTTCGTAGGCACCAG
AGGTCGGGCAACGCAGCGTCCACGGAATCCACTAGAGAGTCTACCGAATC
TGCGAGGCGGTCAACCGAATCTACCAGACGCTCCGCCGCCATCGTTGACG
GCATCCCTCGCGCCCCCGCCCCCGAAACCAGAGGTTTTCGTTGGGCGCGC
CCCAGCCCGGTGGACCCGGCCACGGACACGTCGACGGACGGCTGGCGCAT
CGCTTCCGACATTCAAACGGGATTTTCATTGACCAACCCCAGGCCCGACA
GGGCCATGTCGCCGGACGCCTCAGGCCCAGATGGCAGCATGTTCACTACT
CCCAGCGTCGATCTCTCCGGTAGACGGTTTTCCTTCCGCCGCGTCCCAGT
CGGCGCCGGCGTTGACGCTCACTCCAACGGGACCAGTAACGACAGCGCTG
CCCCCATGCGTCGGCCGCGCTCCAGGCGGGTCCCCAGGAGAAGGAACAGT
GGCTGGCTAGACGACGAATCGGACCGGCTACTCCTCGCGAGTATTCCTGG
CAGCGGCGGCGCTTCTGGTGCTGCAACGAATAGCGATGGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1465:142330..144572+

>mRNA_F-serratus_M_contig1465.3268.1 ID=mRNA_F-serratus_M_contig1465.3268.1|Name=mRNA_F-serratus_M_contig1465.3268.1|organism=Fucus serratus male|type=CDS|length=3078bp|location=Sequence derived from alignment at F-serratus_M_contig1465:142330..144572+ (Fucus serratus male)
ATGCCTTTGAGGAGAAGGTTGTCGCACTCTATTGACCAGTCGCGTCCGTC
TGACGGGACTCGCGAGCACAACGATAGCGGCAACCTTTCCGGGTCCGACC
CTCCTGTAAGCCCCACCGGCTCCATTGAAAGCCTTCCCAACAACAACAGC
AGCAGCAGCGGAGATAGCGGCGGCGGAGGTGTTGGTGGTGGCGGCAGGAG
CAGCCGTAGCAGCAGCACCGAGCGCGAATCTACTGCTACGGACCATGTTG
ATCATCCCGTCACGCCACACGCCTTCTCCCTCGACTCTGCGGGAACCGCG
GGAGACCCCGATGCTCACGAACGGCTGACGCTACCCCGGCCCTGGTCTGT
CGCGGAGCCTTCTCGCCCTCCTCTGGACGATGCGGCCACAGACGCTCTTG
CTGTCCGTCGTCACGTCACTTTCCTCAACGCTTTGGCCAGGATTGGGCGG
GAAAACTCCAGCCTTCGCGACCAGCTGGGTATGAGGTCCACCCGCAGCAC
TGAGGAAGAGGACGGGCCGCCGCCCGTTGTCGCTGCAACTGCTGCTCCAG
CCCCTCCTGAGTTGACTGCTCTTCGAAACTCTCAACTTTCTAGTGCCACA
CCCACCGAAACGGCTTTGGGAGGTTGTGGTACCGCCAGAAACGGCAATGA
TGACAGGATAAGTGAAGGAAGCGGCAACAGCAACGGTAACGATAACGGCA
ATGACAACAGCAGCAACAGCGCGACTACCCCTGTTGCGATGCCTTCGACA
AGGCCGCCCATGACCGTGAGTGAGATGGTTCGGGAGAGGCGTCATCGTCA
GCAGCGAGAGCCGCAGCAGCAGCCGCAGTCGCAGCAGCAGCCACAGCCGG
AGCAGGAAGATGCTCCCCAGCGAATTTCACCGCCGCTTCCACTTCAGCCC
GCGATTGCCCTAGCTGACATGGAGGACGCTGCTCGCGTTCCTAACTTCTC
GATCGCTGGCAGCGGGCGTAGGTTACCTCGTTTTCGTAGGCACCAGAGGT
CGGGCAACGCAGCGTCCACGGAATCCACTAGAGAGTCTACCGAATCTGCG
AGGCGGTCAACCGAATCTACCAGACGCTCCGCCGCCATCGTTGACGGCAT
CCCTCGCGCCCCCGCCCCCGAAACCAGAGGTTTTCGTTGGGCGCGCCCCA
GCCCGGTGGACCCGGCCACGGACACGTCGACGGACGGCTGGCGCATCGCT
TCCGACATTCAAACGGGATTTTCATTGACCAACCCCAGGCCCGACAGGGC
CATGTCGCCGGACGCCTCAGGCCCAGATGGCAGCATGTTCACTACTCCCA
GCGTCGATCTCTCCGGTAGACGGTTTTCCTTCCGCCGCGTCCCAGTCGGC
GCCGGCGTTGACGCTCACTCCAACGGGACCAGTAACGACAGCGCTGCCCC
CATGCGTCGGCCGCGCTCCAGGCGGGTCCCCAGGAGAAGGAACAGTGGCT
GGCTAGACGACGAATCGGACCGGCTACTCCTCGCGAGTATTCCTGGCAGC
GGCGGCGCTTCTGGTGCTGCAACGAATAGCGATGGGGGGATGCCTTTGAG
GAGAAGGTTGTCGCACTCTATTGACCAGTCGCGTCCGTCTGACGGGACTC
GCGAGCACAACGATAGCGGCAACCTTTCCGGGTCCGACCCTCCTGTAAGC
CCCACCGGCTCCATTGAAAGCCTTCCCAACAACAACAGCAGCAGCAGCGG
AGATAGCGGCGGCGGAGGTGTTGGTGGTGGCGGCAGGAGCAGCCGTAGCA
GCAGCACCGAGCGCGAATCTACTGCTACGGACCATGTTGATCATCCCGTC
ACGCCACACGCCTTCTCCCTCGACTCTGCGGGAACCGCGGGAGACCCCGA
TGCTCACGAACGGCTGACGCTACCCCGGCCCTGGTCTGTCGCGGAGCCTT
CTCGCCCTCCTCTGGACGATGCGGCCACAGACGCTCTTGCTGTCCGTCGT
CACGTCACTTTCCTCAACGCTTTGGCCAGGATTGGGCGGGAAAACTCCAG
CCTTCGCGACCAGCTGGGTATGAGGTCCACCCGCAGCACTGAGGAAGAGG
ACGGGCCGCCGCCCGTTGTCGCTGCAACTGCTGCTCCAGCCCCTCCTGAG
TTGACTGCTCTTCGAAACTCTCAACTTTCTAGTGCCACACCCACCGAAAC
GGCTTTGGGAGGTTGTGGTACCGCCAGAAACGGCAATGATGACAGGATAA
GTGAAGGAAGCGGCAACAGCAACGGTAACGATAACGGCAATGACAACAGC
AGCAACAGCGCGACTACCCCTGTTGCGATGCCTTCGACAAGGCCGCCCAT
GACCGTGAGTGAGATGGTTCGGGAGAGGCGTCATCGTCAGCAGCGAGAGC
CGCAGCAGCAGCCGCAGTCGCAGCAGCAGCCACAGCCGGAGCAGGAAGAT
GCTCCCCAGCGAATTTCACCGCCGCTTCCACTTCAGCCCGCGATTGCCCT
AGCTGACATGGAGGACGCTGCTCGCGTTCCTAACTTCTCGATCGCTGGCA
GCGGGCGTAGGTTACCTCGTTTTCGTAGGCACCAGAGGTCGGGCAACGCA
GCGTCCACGGAATCCACTAGAGAGTCTACCGAATCTGCGAGGCGGTCAAC
CGAATCTACCAGACGCTCCGCCGCCATCGTTGACGGCATCCCTCGCGCCC
CCGCCCCCGAAACCAGAGGTTTTCGTTGGGCGCGCCCCAGCCCGGTGGAC
CCGGCCACGGACACGTCGACGGACGGCTGGCGCATCGCTTCCGACATTCA
AACGGGATTTTCATTGACCAACCCCAGGCCCGACAGGGCCATGTCGCCGG
ACGCCTCAGGCCCAGATGGCAGCATGTTCACTACTCCCAGCGTCGATCTC
TCCGGTAGACGGTTTTCCTTCCGCCGCGTCCCAGTCGGCGCCGGCGTTGA
CGCTCACTCCAACGGGACCAGTAACGACAGCGCTGCCCCCATGCGTCGGC
CGCGCTCCAGGCGGGTCCCCAGGAGAAGGAACAGTGGCTGGCTAGACGAC
GAATCGGACCGGCTACTCCTCGCGAGTATTCCTGGCAGCGGCGGCGCTTC
TGGTGCTGCAACGAATAGCGATGGGGGG
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