mRNA_F-serratus_M_contig1465.3266.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1465.3266.1
Unique NamemRNA_F-serratus_M_contig1465.3266.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1465.3266.1 vs. uniprot
Match: D8LT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT47_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 2.100e-60
Identity = 105/135 (77.78%), Postives = 111/135 (82.22%), Query Frame = 3 
Query:  306 MDYESWARQRAMHLAVSDVIASAELRPPLPHGVVAGTAVPPAAPLPGLSGISAKICTVLLFLFVAAWPFAPILVHWKPWASQPTLAFLLLLLTLAWVLVARSHSIFAALLSSWLTLALTGLTAWEYTTEQVRLHQ 710
            MD + W R RA  +A  D   +AELRPP    +V G A PP   LPGLS +SAK+CTVLLFLFVAAWPFAPILVHWKPW SQ TLAFLLLLLTLAWVLVARSHSIFAALLSSWLTLALTGLTAWEYTTEQVRLHQ
Sbjct:    1 MDLDGWVRHRADVMAAYDTAPAAELRPP---PIVMGGASPP---LPGLSRLSAKVCTVLLFLFVAAWPFAPILVHWKPWGSQATLAFLLLLLTLAWVLVARSHSIFAALLSSWLTLALTGLTAWEYTTEQVRLHQ 129
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BLAST of mRNA_F-serratus_M_contig1465.3266.1 vs. uniprot
Match: A0A836CLD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.540e-23
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 3 
Query:  465 KICTVLLFLFVAAWPFAPILVHWKPWASQPTLAFLLLLLTLAWVLVARSHSIFAALLSSWLTLALTGLTAWEYTTEQVRL 704
            ++     FLFVA WP  P+L+ W+PW  +  +AF+LLL  LAWVLV +S S+F+A++SSWLTLALTGLT +EYTT Q+R+
Sbjct:    6 RLAVFFTFLFVATWPLFPVLIQWQPWPLRSAVAFVLLLSVLAWVLVVKSGSLFSAIVSSWLTLALTGLTCYEYTTSQMRM 85
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BLAST of mRNA_F-serratus_M_contig1465.3266.1 vs. uniprot
Match: A0A836CR96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR96_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.320e-19
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:  444 GLSGISAKICTVLLFLFVAAWPFAPILVHWKPWASQPTLAFLLLLLTLAWVLVARSHSIFAALLSSWLTLALTGLTAWEYTTEQVR 701
            GL    +++   L+FL++A WP  P+LV W+PW    TL+FLLLL  LAWV+V  S  + AA+LSS+LTL LTGLT +EY   Q R
Sbjct:   42 GLDPFLSQLYIFLIFLYIATWPLLPVLVQWQPWPLTATLSFLLLLCALAWVVVVESRGLPAAVLSSFLTLLLTGLTCYEYRASQAR 127
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1465.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LT47_ECTSI2.100e-6077.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLD1_9STRA2.540e-2356.25Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CR96_9STRA8.320e-1951.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1465contigF-serratus_M_contig1465:116631..119740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004130.1
Exons3
Model size742
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1465.3266.1prot_F-serratus_M_contig1465.3266.1Fucus serratus malepolypeptideF-serratus_M_contig1465 116660..117354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.2891612-UTR-F-serratus_M_contig1465:116630..1166591622929447.2891612-UTR-F-serratus_M_contig1465:116630..116659Fucus serratus maleUTRF-serratus_M_contig1465 116631..116659 -
1690962856.9058802-UTR-F-serratus_M_contig1465:116630..1166591690962856.9058802-UTR-F-serratus_M_contig1465:116630..116659Fucus serratus maleUTRF-serratus_M_contig1465 116631..116659 -
1622929447.3445296-UTR-F-serratus_M_contig1465:117354..1175791622929447.3445296-UTR-F-serratus_M_contig1465:117354..117579Fucus serratus maleUTRF-serratus_M_contig1465 117355..117579 -
1690962856.983259-UTR-F-serratus_M_contig1465:117354..1175791690962856.983259-UTR-F-serratus_M_contig1465:117354..117579Fucus serratus maleUTRF-serratus_M_contig1465 117355..117579 -
1622929447.3657894-UTR-F-serratus_M_contig1465:119660..1197401622929447.3657894-UTR-F-serratus_M_contig1465:119660..119740Fucus serratus maleUTRF-serratus_M_contig1465 119661..119740 -
1690962857.005003-UTR-F-serratus_M_contig1465:119660..1197401690962857.005003-UTR-F-serratus_M_contig1465:119660..119740Fucus serratus maleUTRF-serratus_M_contig1465 119661..119740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.307379-CDS-F-serratus_M_contig1465:116659..1169051622929447.307379-CDS-F-serratus_M_contig1465:116659..116905Fucus serratus maleCDSF-serratus_M_contig1465 116660..116905 -
1690962856.9207056-CDS-F-serratus_M_contig1465:116659..1169051690962856.9207056-CDS-F-serratus_M_contig1465:116659..116905Fucus serratus maleCDSF-serratus_M_contig1465 116660..116905 -
1622929447.3273385-CDS-F-serratus_M_contig1465:117192..1173541622929447.3273385-CDS-F-serratus_M_contig1465:117192..117354Fucus serratus maleCDSF-serratus_M_contig1465 117193..117354 -
1690962856.9288764-CDS-F-serratus_M_contig1465:117192..1173541690962856.9288764-CDS-F-serratus_M_contig1465:117192..117354Fucus serratus maleCDSF-serratus_M_contig1465 117193..117354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1465.3266.1

>prot_F-serratus_M_contig1465.3266.1 ID=prot_F-serratus_M_contig1465.3266.1|Name=mRNA_F-serratus_M_contig1465.3266.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MDYESWARQRAMHLAVSDVIASAELRPPLPHGVVAGTAVPPAAPLPGLSG
ISAKICTVLLFLFVAAWPFAPILVHWKPWASQPTLAFLLLLLTLAWVLVA
RSHSIFAALLSSWLTLALTGLTAWEYTTEQVRLHQ*
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mRNA from alignment at F-serratus_M_contig1465:116631..119740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1465.3266.1 ID=mRNA_F-serratus_M_contig1465.3266.1|Name=mRNA_F-serratus_M_contig1465.3266.1|organism=Fucus serratus male|type=mRNA|length=3110bp|location=Sequence derived from alignment at F-serratus_M_contig1465:116631..119740- (Fucus serratus male)
TTGACTTCTTGCCCCGTACGGAGGAGAAACTCTTGATGAGCTGGAGAGGC
GCAATCGAGCAGAAACTGCTGTGAACAGAGGTAAGGGGAGTAATTTGCCG
AGGGTTCAGAATTGCTCAACGTTAATAATCTCCGTGAATAGAATTCCGTA
CTACAACCTGAATAGTGTTATCGCTCAAGACAATCAGAACCTGAGCACTG
TTCGAGATGGTGACCTACGCCTAGCCTCCTCACCGCGATATGGTGCGTTG
CCCGGGAGACGATCACTCAGGACCAAAATAGCAGCAGACGAAGCATAGGA
TTACTATGTCACCCGGTAGACCGTACCTGGTATGTTATACGGCTCATTAC
CCCTGCATTCATTCTAGTGACTCATCCCCGACGCAGTTGCTCCTTTCGAG
ACACGAGTTCCACAAATGCACTATTAATAGGTACCTGTAGAAAGATGTCC
TGTACACAGTACAGGCATCAAGCAGTTCTCGGCCGCCAAGATTAACTCTA
CACCCCTGTCTCGTCGCCCTGGCTCTGCTGTACTATTATATGTGAGTATG
GTCATCATATATAGCTAGCAAGTTGAGTAAGGTTGCCAATCCTGCTCGTG
GTCAGCTGGACAGTCCCCGTCGGCGCCTGAGAATTTGGTCTCGCGAGACG
GATTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCACCTCCATAGGCTGAAT
CTGGTACTTACTCACGGGATCCCTCACGATTTCCGCGGCGGCGTCCGTTC
ATTTACTTAAAAACCGCCATACGTCATCGGGTCAGTCCCGAATTTATCGC
GTCGCGCAATTGCGTACCGATGGCGTTCACTGCCGAGATTCCGCCGGCAC
AGGGCCAGTAAACCTCAAGAAACTTCCCGTAACGAGTGATTGCCGCCTTT
GCTGGTCACTATGGAACAATTAACTTGCGCCTCTCTTTCCCACCCCCACT
ACTGGTATGAAGTGGAAATGTTAAAAGTATGGATCGGTGCTGTACTACAG
CACTATTAAAAGTTCTATACTAGGAGTACAGCAGTACTGTACCGTATCTG
TAGCACTAGCACTATTAATTAATAGCACTGCTTTCCCTTGTATGGTCAAA
CATATAGCAGAGTATGGGTCAACCGGGTAAGGCTTGCTAGTCCTGCTCGT
GGTCAGCTGAACTGGGAAAATGCATTCGTTCGTGCCTGAAAATTTGGTCT
CGCGAGACGGTTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCCTCTCCAT
ACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCACGAGTTCCGCG
GCGGCGTCCATATATTTATTTTAAACCGCCATACTGTACGCCATCGGGTC
AGTCCCAAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGC
CGAGAGTCCGCCGGCACAGGGTGTAGACGAAGCTGGGCTGTACGGGTGCG
GGGAGCAATGTATGTACTGTTGTACAGTATATAGTGCAGTACATCGACGA
AGTTGGATTGAGTACTCGTACGCACTGACTCTGATGTACAGAGCGGGAAC
CTTTTGTATCAAACCACCTCTCCAAGGAGCCGTTTCGTACGTGCAGAATG
CGCGAAAACAAGGAATAGTTTTCCAAACAACTTCGAGAGAGAGAGAAGCT
GGCGCGCCCGCGACGTCGCCAGGAGAGAGAAATCGAACCCGAGAGTTATG
TTGATGCTTGAGAATCCGGTCGGTGTTCGCCAGCGCAGGGGTGCTCCTGC
CCTGAGACCTTTAAGGTTTTTTGCAGCTGTTCGAATCGAGCCATCCGCCA
GCCCGCGTGCACGATATATCTTCACTTCTCCAACTCCACGATCCCTGGGG
ATTGAGCTGCTCCGCAGATATATATGTATAGACAGAGCAGAAGTTCGCTT
TCCATGCTCAGCGTTACGAGAGCTACAGTATTATACCTGGTAGTCCTCTA
GACTGTACTGAAAAGCAGTGTGCAACCAATGGTCGTCGCTTGAAGGTAAA
AGACCCCAAGGGTGGCATGCATCGTGTAACTAACTGACACTGCTGTACAC
TGCTGTCTCATGGGATAGTCCTACACGAAGAGCGTTCTCTAATTGGGACA
CGTTACTTAAAACCACCTCGCGTGCACTGCCCTTCTTCTCGCATGTTCGG
CCGGTGGGTAGCTCGGTCCGTGGAGACCAAAAAGAATAATCAGTTTGTTG
CCGTGCAAGCTTGTCCGCTACTACGTCCGCGTAAAAGGCGCGAAAGGGGC
ACATACTACTACGCGGTACATACTCTACAGCAGTCTCAAGTACATACTAC
AGCCAGTGCGCGGGCAAACTTTGGAGAACGACCGTAGAGCCGGCCCCCTT
CATAGCGTGCGACTGACTCCCAGTATTTCAGTACAAATGGATTATGAGTC
TTGGGCGCGGCAACGTGCAATGCACTTGGCCGTGTCGGACGTCATCGCAT
CCGCGGAGCTGCGACCGCCACTGCCGCATGGTGTCGTCGCGGGGACTGCA
GTTCCTCCAGCAGCCCCTCTACCTGGACTCAGCGGGATTTCGGCGAAGGT
GAGCGGGGAAATCGCCCCCCCTCCCCCCCCCCCCTCTTTCTGTTTTAATG
ATACTACAGTACTTTTAATAGTTAGCACAAGGTGTCATCCACCATTCCCC
CTCATGTTCCCGAGTTTATTCATCGCCGCTTCGCAATATGACCCATAATC
GGCTCAGCGCCTCGGTCGTTCACTCCATAACCCCTCGAGCCGTGCTCTCT
CCTCTTCCGTGCGTGCCTGTTGTGCCCGTCCTTCGCCGCGCACGGGGGGG
GGTGGGGGGGTGGCGGAGGCGGAAACGATCATCAGATTTGCACGGTGCTG
CTCTTCCTCTTCGTGGCCGCGTGGCCCTTCGCGCCCATCCTGGTGCACTG
GAAGCCGTGGGCGTCGCAGCCAACCCTCGCCTTCCTCCTGCTGCTGCTCA
CCCTGGCGTGGGTGCTGGTCGCCCGGTCCCACTCCATCTTCGCCGCCCTG
CTGTCGTCGTGGCTGACGCTCGCTCTCACGGGGCTAACTGCGTGGGAATA
CACGACGGAGCAAGTACGGTTGCATCAGTGATGATTTGCCGCTTCGACGG
TATACCAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1465:116631..119740-

>mRNA_F-serratus_M_contig1465.3266.1 ID=mRNA_F-serratus_M_contig1465.3266.1|Name=mRNA_F-serratus_M_contig1465.3266.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig1465:116631..119740- (Fucus serratus male)
ATGGATTATGAGTCTTGGGCGCGGCAACGTGCAATGCACTTGGCCGTGTC
GGACGTCATCGCATCCGCGGAGCTGCGACCGCCACTGCCGCATGGTGTCG
TCGCGGGGACTGCAGTTCCTCCAGCAGCCCCTCTACCTGGACTCAGCGGG
ATTTCGGCGAAGATGGATTATGAGTCTTGGGCGCGGCAACGTGCAATGCA
CTTGGCCGTGTCGGACGTCATCGCATCCGCGGAGCTGCGACCGCCACTGC
CGCATGGTGTCGTCGCGGGGACTGCAGTTCCTCCAGCAGCCCCTCTACCT
GGACTCAGCGGGATTTCGGCGAAGATTTGCACGGTGCTGCTCTTCCTCTT
CGTGGCCGCGTGGCCCTTCGCGCCCATCCTGGTGCACTGGAAGCCGTGGG
CGTCGCAGCCAACCCTCGCCTTCCTCCTGCTGCTGCTCACCCTGGCGTGG
GTGCTGGTCGCCCGGTCCCACTCCATCTTCGCCGCCCTGCTGTCGTCGTG
GCTGACGCTCGCTCTCACGGGGCTAACTGCGTGGGAATACACGACGGAGC
AAGTACGGTTGCATCAGTGAATTTGCACGGTGCTGCTCTTCCTCTTCGTG
GCCGCGTGGCCCTTCGCGCCCATCCTGGTGCACTGGAAGCCGTGGGCGTC
GCAGCCAACCCTCGCCTTCCTCCTGCTGCTGCTCACCCTGGCGTGGGTGC
TGGTCGCCCGGTCCCACTCCATCTTCGCCGCCCTGCTGTCGTCGTGGCTG
ACGCTCGCTCTCACGGGGCTAACTGCGTGGGAATACACGACGGAGCAAGT
ACGGTTGCATCAGTGA
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