mRNA_F-serratus_M_contig1461.3251.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1461.3251.1
Unique NamemRNA_F-serratus_M_contig1461.3251.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1461.3251.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.110e-76
Identity = 138/296 (46.62%), Postives = 181/296 (61.15%), Query Frame = 2 
Query:    8 SNDMLVIMRLPEECTEEQRRAINAAVAESRQDCREVKLKWKFDAARAPYGLVERLIASCHAIGAVEQDVCWRYGALFMSRQMTWRHGKQVRLFKFVVC---YDDC--MLTLRMIGPLSNDRVWAALRYVASAMVILSMEWPGVQWEGWPDCPNHPQARMYLTPPGEARIGGHLLDQEPPDAHSMVCDCQRKANGVLQLVYRRLGTVVDTREGHSVEGFEEENTSPGK----LECCREAFHFWRPRAWQTAASLGTLAVTIFCSVTIAGIVEEKNTLWITSLSVVALLLMAALIVSV 868
            SNDMLVIMRL E C E QR   +   ++  +D   V LKW+FD A  PYGL+ERLIASCH +G VE   CWRYGA+F S  M +  G+ VR +K  +    Y++   + T ++ GPL ++RVW A+RYVASAM+ LS EWPGV W GW DC  HP   +Y+    EAR+G  LL    PDA    CDC  +  GVL+L    LG V+DT +    EG  +E+T   +      C REAF  W P AW+TA  L  LAV +F +  +AGIVE+K TLW +SL V  +L++ +++ SV
Sbjct:  480 SNDMLVIMRLSETCNEHQRTLFDGLASKMPRD--RVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVGDPLLPAAAPDARR--CDCLLEPGGVLRLAVEELGPVIDTGKD-PFEGLSDEDTEDPEETVTCNCVREAFGHWLPHAWRTAKWLFGLAVVLFTTAVVAGIVEDKETLWKSSLGVCCVLMVFSVVASV 770
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BLAST of mRNA_F-serratus_M_contig1461.3251.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 6.010e-61
Identity = 129/303 (42.57%), Postives = 168/303 (55.45%), Query Frame = 2 
Query:   14 DMLVIMRLPEECTEEQRRAINAAVAE--SRQDCREVKLKWKFDAARAPYGLVERLIASCHAIGAVEQDVCWRYGALFMSRQMTWRHGKQVRLFKFVVCYDD------CMLTLRMIGPLSNDRVWAALRYVASAMVILSMEWPGVQWEGWPDCPNHPQARMYLTPPGEARIGGHLLDQEPPDAHSMVCDCQRKANGVLQLVYRRLGTVVDTREG------HSVEG---FEEENTSPGKLEC------CREAFHFWRPRAWQTAASLGTLAVTIFCSVTIAGIVEEKNTLWITSLSVVALLLMAA 853
            DMLVIMRLP+ C E  +  +   V +   R    EV LKW+FD A A +GLVER+IASCH +G+V   +CWRYGA+F S       G    L+ FV+ YD+       +L + M GP + DR+WAALR+VAS++V  S  WPGV+WEG P C  H + RMY   P EARIG  +L    P     VCDC       ++LV  RLGT++DT++       H  EG     ++N       C      C   FH WRP AW+TAA  GT+A T+F +V  A  VE ++T W   +  V LLL  A
Sbjct:  788 DMLVIMRLPDTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSYARA-DDGGLNWLYSFVIRYDEEVGSGERVLAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRMYFKTPIEARIGDPILTDPDPRTAPNVCDCYTTEGNAMRLVLERLGTIIDTQKDDPFGHLHHDEGGSAISQDNRGEEAGGCAAMSASCSRVFHAWRPLAWKTAAGFGTVAATLFGAVDSA--VEPEDTAWKVCVGFVTLLLFGA 1087
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BLAST of mRNA_F-serratus_M_contig1461.3251.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.290e-55
Identity = 121/264 (45.83%), Postives = 145/264 (54.92%), Query Frame = 2 
Query:   14 DMLVIMRLPEECTEEQRRAINAAVAESRQDCREVKLKWKFDAARAPYGLVERLIASCHAIGAVEQDVCWRYGALFMSRQMTWRHGKQVRLFKFVVCYDDCM------LTLRMIGPLSNDRVWAALRYVASAMVILSMEWPGVQWEGWPDCPNHPQARMYLTPPGEARIGGHLLDQEPPDAHSMVCDCQRKANGVLQLVYRRLGTVVDTRE--GHSVEGFEEENTSPGKLEC--CREAFHFWRPRA-----WQTAASLGTLAVTI 760
            DMLVIMRLPE C  E       +    R   REV L W+FD+A  PYGLVER+IASCHA+G VE  +CWRYGA+F SR M    G   RL+ FVV YD  +      L++RM GPL ++RVWAALR+VAS++V +S +WPGV WEGWP C    + R Y     +A IG  LL      A    CDC      VL+LV  RLG VVDT+      VEG         K  C  C+E F    P A     W   ASL  L V +
Sbjct:  630 DMLVIMRLPETCGAEHELQELISDQMRRHSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSD-RLYTFVVRYDSAVGNERRILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYFATSDKASIGDFLLADAATGATRRGCDCLAVEGTVLRLVLERLGKVVDTQAPPASDVEGVRRT-----KAACAGCKETFSVLEPSAGSAAGWCWGASLAFLGVGV 887
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BLAST of mRNA_F-serratus_M_contig1461.3251.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.630e-7
Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 2 
Query:  149 PYGLVERLIASCHAIGAVEQDVCWRYGALFMSRQMTWRHG-----KQVRLFKFVVCYD--DCMLTLRMIGPLSNDRVWAALRYVASAMVILSMEWPGVQWEGWPDCPNHPQARMYLT 478
            P G +E+++  C  +G V+    WRYG L         HG      + R F  VV Y   D  L  ++ G +S    W A  YV SA+ ++ +++PG+ W+G+ +CP H    +++ 
Sbjct:  810 PPGAIEKVLTRCCGLGGVQ--TFWRYGVLV--------HGGLGVQDERRTFAVVVEYSSTDNELIAQIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFVN 916
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1461.3251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE5.110e-7646.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI6.010e-6142.57LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JW02_9PHAE1.290e-5545.83Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI2.630e-729.91LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1461contigF-serratus_M_contig1461:208943..210377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue1.9e-54
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size873
Cds size855
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1461.3251.1prot_F-serratus_M_contig1461.3251.1Fucus serratus malepolypeptideF-serratus_M_contig1461 208943..210361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.3626347-CDS-F-serratus_M_contig1461:208942..2091871622929445.3626347-CDS-F-serratus_M_contig1461:208942..209187Fucus serratus maleCDSF-serratus_M_contig1461 208943..209187 -
1690962855.934151-CDS-F-serratus_M_contig1461:208942..2091871690962855.934151-CDS-F-serratus_M_contig1461:208942..209187Fucus serratus maleCDSF-serratus_M_contig1461 208943..209187 -
1622929445.3786812-CDS-F-serratus_M_contig1461:209507..2096431622929445.3786812-CDS-F-serratus_M_contig1461:209507..209643Fucus serratus maleCDSF-serratus_M_contig1461 209508..209643 -
1690962855.9452555-CDS-F-serratus_M_contig1461:209507..2096431690962855.9452555-CDS-F-serratus_M_contig1461:209507..209643Fucus serratus maleCDSF-serratus_M_contig1461 209508..209643 -
1622929445.3920646-CDS-F-serratus_M_contig1461:209887..2103611622929445.3920646-CDS-F-serratus_M_contig1461:209887..210361Fucus serratus maleCDSF-serratus_M_contig1461 209888..210361 -
1690962855.9539504-CDS-F-serratus_M_contig1461:209887..2103611690962855.9539504-CDS-F-serratus_M_contig1461:209887..210361Fucus serratus maleCDSF-serratus_M_contig1461 209888..210361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.4059641-UTR-F-serratus_M_contig1461:210361..2103771622929445.4059641-UTR-F-serratus_M_contig1461:210361..210377Fucus serratus maleUTRF-serratus_M_contig1461 210362..210377 -
1690962855.9630067-UTR-F-serratus_M_contig1461:210361..2103771690962855.9630067-UTR-F-serratus_M_contig1461:210361..210377Fucus serratus maleUTRF-serratus_M_contig1461 210362..210377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1461.3251.1

>prot_F-serratus_M_contig1461.3251.1 ID=prot_F-serratus_M_contig1461.3251.1|Name=mRNA_F-serratus_M_contig1461.3251.1|organism=Fucus serratus male|type=polypeptide|length=285bp
MLVIMRLPEECTEEQRRAINAAVAESRQDCREVKLKWKFDAARAPYGLVE
RLIASCHAIGAVEQDVCWRYGALFMSRQMTWRHGKQVRLFKFVVCYDDCM
LTLRMIGPLSNDRVWAALRYVASAMVILSMEWPGVQWEGWPDCPNHPQAR
MYLTPPGEARIGGHLLDQEPPDAHSMVCDCQRKANGVLQLVYRRLGTVVD
TREGHSVEGFEEENTSPGKLECCREAFHFWRPRAWQTAASLGTLAVTIFC
SVTIAGIVEEKNTLWITSLSVVALLLMAALIVSVL
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mRNA from alignment at F-serratus_M_contig1461:208943..210377-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1461.3251.1 ID=mRNA_F-serratus_M_contig1461.3251.1|Name=mRNA_F-serratus_M_contig1461.3251.1|organism=Fucus serratus male|type=mRNA|length=1435bp|location=Sequence derived from alignment at F-serratus_M_contig1461:208943..210377- (Fucus serratus male)
CGGTGAATCGAACGATATGCTGGTCATCATGCGTCTACCCGAGGAATGTA
CCGAGGAACAACGACGAGCAATTAATGCTGCTGTCGCGGAGTCACGTCAG
GACTGTCGGGAGGTGAAACTGAAATGGAAATTTGACGCCGCGAGAGCTCC
GTACGGGTTGGTGGAGCGACTGATAGCTTCGTGCCATGCCATTGGCGCAG
TAGAGCAGGATGTGTGCTGGAGGTATGGGGCGTTATTCATGAGTCGTCAA
ATGACGTGGAGGCATGGTAAGCAGGTTCGACTGTTCAAGTTTGTCGTCTG
CTACGACGATTGCATGTTAACCTTAAGGATGATCGGTCCCCTCTCAAACG
ACCGGGTGTGGGCCGCACTACGTTACGTGGCATCCGCGATGGTTATTCTT
TCGATGGAATGGCCCGGAGTGCAATGGGAGGGCTGGCCGGACTGTCCGAA
CCATCCGCAAGCCCGCATGTACTTGACGCCACCGGGCGAGGTACGATCAC
ACTCTAGAGGAATGCGACCCAAATGTATGTTTGAGTGTGCGTTGATGTTT
TGCAGTTTCTGCTATGTTCTTATGTTCCTATGTTCCTGTTAAAGGTATTC
CGTAAGCGGAGTGAGCCGGTTGTGTTTGTCCACGTTTTCGCAGGGATCCC
CTTAAGATATACCTACAGTATTGTCTAGACTGGTTGAATTAGTCTAGGTC
TAACATGTTGTTTTGTACGTTTGATTCCAAACAGGCGAGAATCGGTGGCC
ACCTGCTGGACCAGGAACCCCCGGACGCGCACAGCATGGTTTGTGACTGC
CAACGAAAGGCTAATGGGGTGCTCCAGCTAGTTTATCGGCGTCTTGGAAC
GGTGGTCGATACGAGAGAAGGTGTAGGTGTTGGTGCTCCTTATGTGTAGC
ATTATTTCTGACATTTCACATTGTTCCTGCACAATAGAGTATTTTTAGTT
TCTTTCGCAGAGACGAACATTCATTAAGACATTTCCTCTTTTCATGCAGG
GTCGCACCTACTTATAATTTGTGCGAAATATTTGCACTTATAACATAACA
ACAGTGGGCTTGCACGGACGCGTGACATAACTTCTATCTTTTGATTGATC
CAGGGTATATTTATGTACGGTACCATCGATTATGTAGCACAAAGGTGTAC
CAAATACCAACTGAGGATTACATTCCAACTCTCTTCACAGGTCATTCGGT
CGAGGGGTTCGAGGAAGAAAACACATCTCCAGGGAAGCTTGAATGCTGTC
GCGAGGCCTTCCATTTTTGGCGGCCGAGGGCCTGGCAGACAGCGGCATCC
CTCGGGACCCTGGCCGTGACCATTTTCTGTTCAGTAACTATCGCGGGCAT
CGTCGAAGAGAAAAATACCCTTTGGATTACTTCCTTGTCAGTTGTGGCGC
TGCTGTTGATGGCGGCTTTGATAGTGTCAGTGCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1461:208943..210377-

>mRNA_F-serratus_M_contig1461.3251.1 ID=mRNA_F-serratus_M_contig1461.3251.1|Name=mRNA_F-serratus_M_contig1461.3251.1|organism=Fucus serratus male|type=CDS|length=1710bp|location=Sequence derived from alignment at F-serratus_M_contig1461:208943..210377- (Fucus serratus male)
ATGCTGGTCATCATGCGTCTACCCGAGGAATGTACCGAGGAACAACGACG
AGCAATTAATGCTGCTGTCGCGGAGTCACGTCAGGACTGTCGGGAGGTGA
AACTGAAATGGAAATTTGACGCCGCGAGAGCTCCGTACGGGTTGGTGGAG
CGACTGATAGCTTCGTGCCATGCCATTGGCGCAGTAGAGCAGGATGTGTG
CTGGAGGTATGGGGCGTTATTCATGAGTCGTCAAATGACGTGGAGGCATG
GTAAGCAGGTTCGACTGTTCAAGTTTGTCGTCTGCTACGACGATTGCATG
TTAACCTTAAGGATGATCGGTCCCCTCTCAAACGACCGGGTGTGGGCCGC
ACTACGTTACGTGGCATCCGCGATGGTTATTCTTTCGATGGAATGGCCCG
GAGTGCAATGGGAGGGCTGGCCGGACTGTCCGAACCATCCGCAAGCCCGC
ATGTACTTGACGCCACCGGGCGAGATGCTGGTCATCATGCGTCTACCCGA
GGAATGTACCGAGGAACAACGACGAGCAATTAATGCTGCTGTCGCGGAGT
CACGTCAGGACTGTCGGGAGGTGAAACTGAAATGGAAATTTGACGCCGCG
AGAGCTCCGTACGGGTTGGTGGAGCGACTGATAGCTTCGTGCCATGCCAT
TGGCGCAGTAGAGCAGGATGTGTGCTGGAGGTATGGGGCGTTATTCATGA
GTCGTCAAATGACGTGGAGGCATGGTAAGCAGGTTCGACTGTTCAAGTTT
GTCGTCTGCTACGACGATTGCATGTTAACCTTAAGGATGATCGGTCCCCT
CTCAAACGACCGGGTGTGGGCCGCACTACGTTACGTGGCATCCGCGATGG
TTATTCTTTCGATGGAATGGCCCGGAGTGCAATGGGAGGGCTGGCCGGAC
TGTCCGAACCATCCGCAAGCCCGCATGTACTTGACGCCACCGGGCGAGGC
GAGAATCGGTGGCCACCTGCTGGACCAGGAACCCCCGGACGCGCACAGCA
TGGTTTGTGACTGCCAACGAAAGGCTAATGGGGTGCTCCAGCTAGTTTAT
CGGCGTCTTGGAACGGTGGTCGATACGAGAGAAGGCGAGAATCGGTGGCC
ACCTGCTGGACCAGGAACCCCCGGACGCGCACAGCATGGTTTGTGACTGC
CAACGAAAGGCTAATGGGGTGCTCCAGCTAGTTTATCGGCGTCTTGGAAC
GGTGGTCGATACGAGAGAAGGTCATTCGGTCGAGGGGTTCGAGGAAGAAA
ACACATCTCCAGGGAAGCTTGAATGCTGTCGCGAGGCCTTCCATTTTTGG
CGGCCGAGGGCCTGGCAGACAGCGGCATCCCTCGGGACCCTGGCCGTGAC
CATTTTCTGTTCAGTAACTATCGCGGGCATCGTCGAAGAGAAAAATACCC
TTTGGATTACTTCCTTGTCAGTTGTGGCGCTGCTGTTGATGGCGGCTTTG
ATAGTGTCAGTGCTCGTCATTCGGTCGAGGGGTTCGAGGAAGAAAACACA
TCTCCAGGGAAGCTTGAATGCTGTCGCGAGGCCTTCCATTTTTGGCGGCC
GAGGGCCTGGCAGACAGCGGCATCCCTCGGGACCCTGGCCGTGACCATTT
TCTGTTCAGTAACTATCGCGGGCATCGTCGAAGAGAAAAATACCCTTTGG
ATTACTTCCTTGTCAGTTGTGGCGCTGCTGTTGATGGCGGCTTTGATAGT
GTCAGTGCTC
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