mRNA_F-serratus_M_contig1458.3239.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1458.3239.1
Unique NamemRNA_F-serratus_M_contig1458.3239.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1458.3239.1 vs. uniprot
Match: A0A835YYX0_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.450e-11
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  561 AKLLWKRYGLVAIGTSLVLYVGGFGVVYALLATGLVDPNVDTSDVMQRLADFT-------GASSNDRLADYVKHMQHLVRTNKDYEHLFMAFVVNEALELPRDVVVLLITPRIARALGTAPSR 908
            A+++WKRYG+VAIGT   LY G F   Y L  +G V P VDT+  +++  D         G      L +  + + +L+ TN   +   M+ V  E  E  R V+VL +TP +AR LG AP +
Sbjct:   67 ARMMWKRYGIVAIGTYYALYAGMFVGGYLLFESGYVPP-VDTTLALEKAHDGIAWMVTKEGEFPPPGLTNTFRRLHYLIETNPQAKSAAMSLVATELAEPIRYVIVLAVTPTLARVLGRAPRK 188          
BLAST of mRNA_F-serratus_M_contig1458.3239.1 vs. uniprot
Match: F0W5K2_9STRA (Uncharacterized protein AlNc14C21G2167 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.340e-7
Identity = 42/124 (33.87%), Postives = 61/124 (49.19%), Query Frame = 3
Query:  564 KLLWKRYGLVAIGTSLVLYVGGFGVVYALLATGLVDPNVDTSDVMQRLADFTGASSNDRLA----DY--VKHMQHLVRTNKDYEHLFMAFVVNEALELPRDVVVLLITPRIARALGTAPSRDTK 917
            K LW++YGLVAIGT   +Y    G +Y  +  GL+  N +         DF   S+ +++     DY   K++  + R N       +A+V  +  E  R  + L ITPRIAR LG AP +  K
Sbjct:    7 KDLWRKYGLVAIGTYFTMYGIVLGTIYISIENGLISKNRNVRSNKDTTTDFDVVSTTNKMIALAEDYGLAKYLD-VERVNSKTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPKKMLK 129          
BLAST of mRNA_F-serratus_M_contig1458.3239.1 vs. uniprot
Match: A0A024GSA6_9STRA (DUF1279 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSA6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.830e-7
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 3
Query:  564 KLLWKRYGLVAIGTSLVLYVGGFGVVYALLATGLVDPNVDTSDVMQRLADFTGASSNDRLA----DY--VKHMQHLVRTNKDYEHLFMAFVVNEALELPRDVVVLLITPRIARALGTAPSRDTK 917
            K LW++YGLVAIGT   +Y    G +Y  +  GL+  N +T        +F   S+ +++     DY  VK++  + R N       +A+V  +  E  R  + L ITPRIAR LG AP +  K
Sbjct:   65 KDLWRKYGLVAIGTYFTMYGIVLGSIYISIENGLISKNRNTRLNKDTTTNFDVVSTTNKMIALAEDYGLVKYLD-VERVNSKTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPKKIVK 187          
BLAST of mRNA_F-serratus_M_contig1458.3239.1 vs. uniprot
Match: A0A3R7J9G6_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9G6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.910e-6
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 3
Query:  564 KLLWKRYGLVAIGTSLVLYVGGFGVVYALLATGLVDPNVDTSDVMQRLADFTGASSNDRLADYVKHM---QHLV--RTNKDYEHLFMAFVVNEALELPRDVVVLLITPRIARALGTAPSRDTKETR 926
            K LW++YG+VAIGT L LY    G +Y  +  G V  +   S    +   F   ++ ++   + + M   Q+L   R N       +A+V  +  E  R  V L +TPRIAR LG AP    K +R
Sbjct:    8 KDLWRKYGIVAIGTYLSLYGAVLGSIYVAIDQGWVRTSKRRSSREGQEESFNLITTTNKFVKFAEDMGIAQYLEVERVNSKTGSFLLAWVATKFTEPVRLAVTLAVTPRIARFLGRAPKLPLKVSR 133          
BLAST of mRNA_F-serratus_M_contig1458.3239.1 vs. uniprot
Match: H3GLJ1_PHYRM (DUF1279 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLJ1_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 5.420e-6
Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 3
Query:  564 KLLWKRYGLVAIGTSLVLYVGGFGVVYALLATGLVDPNVDTSDVMQRLAD-----FTGASSNDRLADYVKHMQHLV--RTNKDYEHLFMAFVVNEALELPRDVVVLLITPRIARALGTAPSRDTKETR 926
            K LW++YG+VAIGT L +Y    G VY  +  G V  N  TS   +  +D      T  +   R A+ +   Q+L   R N       +A++  +  E  R  + + +TPRIAR LG AP    K TR
Sbjct:   72 KDLWRKYGVVAIGTYLTMYGAVLGSVYLAIDQGWVRTNKRTSSKGEGQSDETFNLVTTTNKFVRFAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAPKLPPKATR 199          
BLAST of mRNA_F-serratus_M_contig1458.3239.1 vs. uniprot
Match: A0A836CLB5_9STRA (DUF1279 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.170e-5
Identity = 41/125 (32.80%), Postives = 60/125 (48.00%), Query Frame = 3
Query:  564 KLLWKRYGLVAIGTSLVLYVGGFGVVYALLATGLVDPN------VDTSDVMQ----RLADFTGASSNDRLADYVKHMQHLVRTNKDYEHLFMAFVVNEALELPRDVVVLLITPRIARALGTAPSR 908
            K +W+RYGLVA+GT   +YV   G +Y +   G +  +          D +Q    RL D+  A  N   A Y K  Q        + +  +A++  +  E  R +  + ITPRIARALG AP +
Sbjct:    2 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVN---ALYAKMQQ-----EPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1458.3239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YYX0_9STRA8.450e-1136.59DUF1279 domain-containing protein n=1 Tax=Tribonem... [more]
F0W5K2_9STRA1.340e-733.87Uncharacterized protein AlNc14C21G2167 n=1 Tax=Alb... [more]
A0A024GSA6_9STRA5.830e-734.68DUF1279 domain-containing protein n=1 Tax=Albugo c... [more]
A0A3R7J9G6_9STRA4.910e-633.33DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
H3GLJ1_PHYRM5.420e-634.38DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
A0A836CLB5_9STRA1.170e-532.80DUF1279 domain-containing protein (Fragment) n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1458contigF-serratus_M_contig1458:188331..194364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-21_006290.1
Exons5
Model size1291
Cds size861
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.1123633-UTR-F-serratus_M_contig1458:188330..1886921622929443.1123633-UTR-F-serratus_M_contig1458:188330..188692Fucus serratus maleUTRF-serratus_M_contig1458 188331..188692 -
1690962854.6331015-UTR-F-serratus_M_contig1458:188330..1886921690962854.6331015-UTR-F-serratus_M_contig1458:188330..188692Fucus serratus maleUTRF-serratus_M_contig1458 188331..188692 -
1622929443.2048154-UTR-F-serratus_M_contig1458:194296..1943641622929443.2048154-UTR-F-serratus_M_contig1458:194296..194364Fucus serratus maleUTRF-serratus_M_contig1458 194297..194364 -
1690962854.698719-UTR-F-serratus_M_contig1458:194296..1943641690962854.698719-UTR-F-serratus_M_contig1458:194296..194364Fucus serratus maleUTRF-serratus_M_contig1458 194297..194364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.1254385-CDS-F-serratus_M_contig1458:188692..1889441622929443.1254385-CDS-F-serratus_M_contig1458:188692..188944Fucus serratus maleCDSF-serratus_M_contig1458 188693..188944 -
1690962854.6438606-CDS-F-serratus_M_contig1458:188692..1889441690962854.6438606-CDS-F-serratus_M_contig1458:188692..188944Fucus serratus maleCDSF-serratus_M_contig1458 188693..188944 -
1622929443.1387901-CDS-F-serratus_M_contig1458:192428..1925761622929443.1387901-CDS-F-serratus_M_contig1458:192428..192576Fucus serratus maleCDSF-serratus_M_contig1458 192429..192576 -
1690962854.6530282-CDS-F-serratus_M_contig1458:192428..1925761690962854.6530282-CDS-F-serratus_M_contig1458:192428..192576Fucus serratus maleCDSF-serratus_M_contig1458 192429..192576 -
1622929443.1531336-CDS-F-serratus_M_contig1458:192930..1930101622929443.1531336-CDS-F-serratus_M_contig1458:192930..193010Fucus serratus maleCDSF-serratus_M_contig1458 192931..193010 -
1690962854.6682522-CDS-F-serratus_M_contig1458:192930..1930101690962854.6682522-CDS-F-serratus_M_contig1458:192930..193010Fucus serratus maleCDSF-serratus_M_contig1458 192931..193010 -
1622929443.1656218-CDS-F-serratus_M_contig1458:193302..1935461622929443.1656218-CDS-F-serratus_M_contig1458:193302..193546Fucus serratus maleCDSF-serratus_M_contig1458 193303..193546 -
1690962854.6775715-CDS-F-serratus_M_contig1458:193302..1935461690962854.6775715-CDS-F-serratus_M_contig1458:193302..193546Fucus serratus maleCDSF-serratus_M_contig1458 193303..193546 -
1622929443.1911542-CDS-F-serratus_M_contig1458:194159..1942961622929443.1911542-CDS-F-serratus_M_contig1458:194159..194296Fucus serratus maleCDSF-serratus_M_contig1458 194160..194296 -
1690962854.6866047-CDS-F-serratus_M_contig1458:194159..1942961690962854.6866047-CDS-F-serratus_M_contig1458:194159..194296Fucus serratus maleCDSF-serratus_M_contig1458 194160..194296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1458.3239.1prot_F-serratus_M_contig1458.3239.1Fucus serratus malepolypeptideF-serratus_M_contig1458 188693..194296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1458.3239.1

>prot_F-serratus_M_contig1458.3239.1 ID=prot_F-serratus_M_contig1458.3239.1|Name=mRNA_F-serratus_M_contig1458.3239.1|organism=Fucus serratus male|type=polypeptide|length=287bp
MMSLRVSRVTGTINQLLGQNHSGPSTTYAKIMKPSQLQYIAASITRYATG
GVLTRRLDRLSPYDRRLSKTAAATVVVVLNDRRHFSGHSGRPGNKRTEGS
TQKRGDTKESYTFLDREGHGHLAGQSGKRDLPAGKSAAGFGEDDEDVDFK
NMTMWQRVKYVRSTAKLLWKRYGLVAIGTSLVLYVGGFGVVYALLATGLV
DPNVDTSDVMQRLADFTGASSNDRLADYVKHMQHLVRTNKDYEHLFMAFV
VNEALELPRDVVVLLITPRIARALGTAPSRDTKETR*
back to top

mRNA from alignment at F-serratus_M_contig1458:188331..194364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1458.3239.1 ID=mRNA_F-serratus_M_contig1458.3239.1|Name=mRNA_F-serratus_M_contig1458.3239.1|organism=Fucus serratus male|type=mRNA|length=6034bp|location=Sequence derived from alignment at F-serratus_M_contig1458:188331..194364- (Fucus serratus male)
CGTACACCTGCTGTGACAAGCAGCAGTGATTGTTTCTGTGACGGCTGTCG TTCTCCCAACGGCGAGCGATGATGTCTCTGCGTGTTTCACGAGTGACCGG CACTATCAATCAGTTATTAGGTCAAAACCACTCTGGCCCATCGACGACAT ATGCGAAGATTATGAAGCCCAGTCAGCTCCAGTACATCGCGGCAAGCATT ACCAGGTACAGAATGTACCCACGGTGATCATTTCGTCTCCCTACAAAAAT CATAAGTCAGTCCGTCGCAGCTCGAGTTGCACGTTACTCGTATCGCAATA GTAAAGCGGTGGGTGCCATTGATCGGAGACTTGATTCATTGTTGAATACC AAAGAAATATCGGGTTCTGGTGGTGAATTCGTGGCGGGTATGACCTTGTG TCCATCAATAAATAATTGGGCGCCGCCGCGGAACTCGGGAGGATCCCGTA GGCACCAGATTCAGCCTGAACATGGATATGAGCAGGCTGACGCGGGACGA GACTGCCGAACCCGTCTCGCGAGATCGAACTCTTAGTCGCGTACGGGGAC CGGGAAATCACCATCTTCCCTGTTCAGCTGACCTCGGGCAGGATTGGCAA TGTGTGTGACGATATAGACTACGGTACATACATACAGAAGAAAATAAGGT TTAGATGCGCTCAGCTCCCCAACATTCCCCGGTAACTCGATACATGAGCT CTTCGACGCGCTCACACGGGCTGCCTTCGCAGCAGAATAGCGTGCTCAGC CCTATCCTCTGGTGGCTGCGATAGTTCCCATCGGTCCGTTCCATTTTCCA ACCCACCCCATTTGAAAGGTATGCGACTGGAGGAGTCCTAACGCGGCGAC TGGACCGGTTATCGCCTTACGACCGTCGGTTGTCAAAAACCGCGGCTGCG ACAGTAGTGGTGGTTTTGAACGACCGCCGTCACTTCTCAGGGCATTCAGG GAGACCGGGAAACAAGCGAACCGAAGGCTCGACACAAAAGAGAGGCGACA CAAAAGAATCTTACACTTTCCTCGACCGAGAGGGCCATGGACATTTGGCT GGACAGTCCGGGGTGAGGATTGACTAGCTGCTGCAGACACCGGGTCTAGT GTTTGTACGGTGGCGTTCAGTATGACGTATGAGCAAGATCAATCTTGTGC GGAACAAGCAGTGAGGCCTGTTTATCTTCTATACGCCACGTGCGGCCCAC AGTGAATGCCGCAGGAGCTTTATTCAGGCTGCAAGCATAGATTCAATGTT TGTCAAATACGTCGGGCGAGGATGTGGAATACTGCGCTACAAATAGCGTT GACCCTTCCTTCATCGTTTCCCTCCTACGGCTGCGTGTACAACTGGAACT TCAGAAGCGTGACCTCCCTGCAGGCAAGTCGGCAGCCGGTTTTGGGGAAG ATGACGAAGATGTGGACTTCAAGAACATGACCATGTATGAACTTTACGTA ACCATATTCCGGAAGGGGTTGATCTTCGGTGTGTTGTGTGTTGATGTAGC AGCTGTTCCGTGCATCACCTTACCGTTTCTTTGTAGTCTGGATCGACATC GAAATCTTGATGCGACTCCGACGAGATGTTTGCTCATGCGGGCGCTCGAA TGCCATTGAAGGTCGTATCTCTAATGGTCAACACGTCGTGCCTGAAGGGA TGTCTCACCCGCAACGTTTGGCATTCTTCGGTGTGTAGCACCCTCTAAGA GCAAAGTGTAAGCATCACCTGTTTCGGCCGTACCTTCAACGTGTCGTTCG ACCTCACACCACGCTATACCCTCCCCCCCCATGTGCAGGTGGCAACGCGT GAAGTACGTGAGAAGTACGGCAAAACTTTTGTGGAAGCGGTACGGATTGG TGGCGATTGGGACGAGCTTGGTGCTGTACGTTGGAGGATTTGGAGTTGTG TACGCACTGCTAGCTACAGGCTTAGTGGACCCTAACGTGAGCACGGCAGC TTCACGTAACAACCCTCCCACTTTACTGTCTGTACCAGTACACATTGAAC ATCTTGCACGCACCAGTTAAGCCCCATAGATATAGCTGCTCGAACGCCAA GGGTCGCCGGTAGAGGCTACTCCGATCTCTTCAACCTATCTCACAGTCGG TTGGCCCTCGTTTGAGCGGTGAAGAGCGACCGGTCGATCCTGCTATACAA TCCTGCTTCCAACAACGAATTAGTTCCTGGCTCGAGAAGCTCATTGGGCC TACACTATATCCCTCATCGCTGTCTAAGGCCAACACTTTCTGTAGGAGCT CCTCTGGCAGTCTTGGCTGCTGAGTCAAACTGCCACGAATTGGAAAGTTT GCGCGGATTCGTTTCCTTCTTTGCCAAAGTTCTGCGTTAAAATATTTCAC TTTTGCACCAGTCACCAGATTCAGGGCTTGCTCCAAGGGAACTCTAACGC GTACAAGTAGCCTTTGTATCGTGTTATGCGATGTACGGTTATAATGTCTC GCTAATATAGTTCTTGAAGAACTAAGTTCTTGTTCGCTCTTACACCGCTC TTGGTATTAATAGTACTGATACAAAAAGAAAAGTTCTGGACGAGAGGGAC GGCAAGATTCCATTCCGCCTACTCTGTGGACACCTGACGAAACAAGGAAA CAAGGCAGTTAGTTACCTCTTACCGGGTCTCCGACTGCAAACCCAATTTC TGCTCGAACCACACAGCTGGATCGCCATTCGTGCAGCCACATGGATTCAC AACCCCACTCTTCTTGCCTACATACTGGAAAACTATTACTGTAATATATA TGGTCTACGCCCGGCAAAGCGCGGTAGTGCTGATCGATCCAAAGGCCACG CAGGCGTTTTGCGGGGCACCATACTCGCATCTCTTCACGGACAAAGCACC GGCAAAATTTGGCGTATTAGTCCGTTGAGTGCTGGTTGTCCACTCTTTGG AGGGGATCACGGGTCCGTGCTTTTGTCCGACGCCAGAAACTAGTCAGTGT TCAGCCTTGAGCGTTCCTGCAAACCAGCATTCTAATTCGTACAGACTTGC AAACTGGTTCTTGTACAAAAGATCGCCCTGCTGTCATTGCAGTCTGTTGA TGTGGGGAACTCCGTGCCGATATGTTGTTGATTTACTTAACGTTCATCTG ATGCTTGGCATGGTACTGTATGACATCGCAGGTACTAATAAGGACATGTA TTATTAATAACAGCCAAATCATGCGAGTGCACCCCATCCGGTCCACTCTG TGAAGTTAAGCGGTGTCGGGCCGGGGCCAATACTACGGTGGGGGACACCG TGGGAAGTGTACCATTTACGCTCCTTTCACCCTCGTCGCCTGCTAGTGCG GAAGTCGTGAGTTCAATTCTTGTCAAAACAGGATTTTTATTCTGGCGTCC GTAGCGGAAAGCGTTAGTACGCGGGTAAGTAAAATTCAAGCATTGGTTGA CGAGTTGTTAGAGTGCTGTACAGTATGAATACTTGCATCACGATAAAAGT TCATAAGGTGGGAACCGGGGACAGATGGGAAGATCCTTAGTTACCACAGG CAGGATGGGAAATATATTATAGCCCTTGGTACAACCCCCAATCTCTCAAT ATACCGTAGTCAGAATCGCAGTGGTGGTCAAAGCAGCGGTTTAGTAGTTT ACTCCAGCCTATATAACGGCAATATATATATATATATTATATATATTTAA ACAGTCCCACTAAACCACATATTTGCTGGACCCATTTCAAAGCGCCTTGA TTGATTGTTGAATCCTCACATAAGTTGGTGCCAAAATTCAGCCCGTAATA CTGCGCACTGAAAATATCTGGACCGAAATCAAGCAAGTGATCCCTGCGTC TTTGCGGCAATTTCTTCCAGAATCTAAAGTTCGAGGCGATGGGCTAAGTT TGTAGATTTCTAGCTTTCTGAAGTCGGGCTAGGACGAGGTTCCTGACCTC ACAGGTTCAGCACATTCCGATGATCTTAGTACACGGCAGATTTTTTTTAC TCAGCGAATGTTGCTCACCGGGCTGACCATAGACATGGTGAGGACCCTCC GCCACGGTACTGTGCTTCGTGTTTTGCACCTGTATACCGGGAACCCTGGC GTGTGCCCTTTTGTAGATACCCGGGTTCCCGCCTAGATTATTATATACTG GTACCAATATGTTCCTAAGACCTGAAATTTTTTCCTTTTATTTTATTTGT ATGATGACCATACGTAAGGGCCTGATCGGGAGCTCGATTGCGGGACTCAT GTTTTCAAAACCCAATCCAATATGTACGGAGATGTTCATTCCGTCAACGA CTGCATTTCAATACGATATGTCTGTCGATTTCTGGACAGTTTTCGTCGCG GAAATTGAGCATTTCCCGTTGGGATTTCTCACTGAAGGGGATCCTCGCTT CGCCTCCCACGATTTGGTGAAATTATATCCGATTTACAGTGGGGACGGAT TCAGCGACGTTCAGTAGTCGGCCGACCACGCTGGAAATTGACCCGTTTTC GAATTCCTAAATCTTCGGTGACCGGTAATATAAATATACTCCGTATGGAC GCCGCCGCGGAACTCGGGAGGAATCCCATAAGTAAGACCGAGATTCAGCC TGAGTATGGAGTTGAGCAGGCTGACGCGGGACGGGACTGCCGAAACCGTC TCGCGAGACCAGATTCTCAGAGGCACGAACGCAGACAGGGGAATATTATT TTCCCTGTTCAGCTGACCACGAACAGGATTGGCAACCTTACCTGGTTGAT CCATACTCTTGCTATATGTGTGACCATACATCCATCCAAAGCTTGCATCA TATAGAGGAATTCAATTACAGAAAAACTGAGATACAGGCACCGGAATATC ACAACAGTTTTCACAAAATAAATCTAGAAGTAACTAGCATTTTTGGCGAA GTTTTAAAAGATTTGCCTACACCTTGAATAATACTTTTTGAAGATGCTCG AATAAAATAGGACTTACTTCTGCTACGATGCCCATTAAATAAAAATGGAT AGTTTCTAGATTTATATAAAGATTAATCTTTAGTATTTTTATTATAACCA ATTTTAAGGAGGCGATTCTTATCTCTTGTAAATATTTTTTAATATAGTTT TGTACACTTTTGTAGCTCCTATAATTATACCAAAAATTTGGAAACATTTT TATACCGATTCCACAATTTTTTATGCATACCAGTATAAACTTAACCCTAG AACCAAAACTAATCAATTATTATACAGCAATTACAGCAATTTAATACCTT GATAAATTTTGTTTTCCCATTTTGATCATATCAAATATTATACAGAAAGG TTTGCACAAGAAATATTTATAGCACTTTTACTATAGCCATGTCGAGCTAG CCCTAGGATGTCTATCTCCACATGAAGTTGTCCGCAGTTTACAAGCCAAA CAATTGCTATCGTATCTTCGCCAGACTAATATTTACAAAATGTGTTCTCG GGCTGGTCCTCATGGGATAGGTGGATACCTCAGACGTGATGCAGAGACTG GCGGACTTCACGGGCGCCAGCAGCAATGACAGACTGGCGGATTACGTCAA ACACATGCAACATCTCGTCCGCACAAATAAGGACTACGAACATTTGTTCA TGGCCTTTGTGGTCAACGAGGCTCTCGAGCTTCCGCGTGACGTCGTTGTG CTTCTCATCACGCCGCGCATCGCTCGAGCGTTGGGTACAGCGCCTTCGAG AGACACCAAGGAGACCAGATGACGTACCTCGTATTATAGTAATCTATTTT ACACGTCAAGTCTACGGAAATTGCAACATCGCCCGCCGATACTTACGGCT ATTCCGTCAGGATAAGCAGCATCGACATTGTAACAAGATTAATAACTTGG CCGTGGCCTGCATTGGCCATAAGGACTGACGTGGTCGCAGGGTACCATGC CTGTTTTGCCACGTGGCCCCGAGTCTGGATTTTCACGTAGCTTTCGAGCT ACGATTGCACTGATTCAACAGATCAAAAAAATAATTTTTCGTTTCCTGTG GTCACAAGAGTGTTTCTAGATATATACCCCAACTACGTGCGAAGTAAAAT AGCTCGGTGCTTCGATCAAGCCTGTCAAGCACAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1458:188331..194364-

>mRNA_F-serratus_M_contig1458.3239.1 ID=mRNA_F-serratus_M_contig1458.3239.1|Name=mRNA_F-serratus_M_contig1458.3239.1|organism=Fucus serratus male|type=CDS|length=1722bp|location=Sequence derived from alignment at F-serratus_M_contig1458:188331..194364- (Fucus serratus male)
ATGATGTCTCTGCGTGTTTCACGAGTGACCGGCACTATCAATCAGTTATT
AGGTCAAAACCACTCTGGCCCATCGACGACATATGCGAAGATTATGAAGC
CCAGTCAGCTCCAGTACATCGCGGCAAGCATTACCAGATGATGTCTCTGC
GTGTTTCACGAGTGACCGGCACTATCAATCAGTTATTAGGTCAAAACCAC
TCTGGCCCATCGACGACATATGCGAAGATTATGAAGCCCAGTCAGCTCCA
GTACATCGCGGCAAGCATTACCAGGTATGCGACTGGAGGAGTCCTAACGC
GGCGACTGGACCGGTTATCGCCTTACGACCGTCGGTTGTCAAAAACCGCG
GCTGCGACAGTAGTGGTGGTTTTGAACGACCGCCGTCACTTCTCAGGGCA
TTCAGGGAGACCGGGAAACAAGCGAACCGAAGGCTCGACACAAAAGAGAG
GCGACACAAAAGAATCTTACACTTTCCTCGACCGAGAGGGCCATGGACAT
TTGGCTGGACAGTCCGGGGTATGCGACTGGAGGAGTCCTAACGCGGCGAC
TGGACCGGTTATCGCCTTACGACCGTCGGTTGTCAAAAACCGCGGCTGCG
ACAGTAGTGGTGGTTTTGAACGACCGCCGTCACTTCTCAGGGCATTCAGG
GAGACCGGGAAACAAGCGAACCGAAGGCTCGACACAAAAGAGAGGCGACA
CAAAAGAATCTTACACTTTCCTCGACCGAGAGGGCCATGGACATTTGGCT
GGACAGTCCGGGAAGCGTGACCTCCCTGCAGGCAAGTCGGCAGCCGGTTT
TGGGGAAGATGACGAAGATGTGGACTTCAAGAACATGACCATAAGCGTGA
CCTCCCTGCAGGCAAGTCGGCAGCCGGTTTTGGGGAAGATGACGAAGATG
TGGACTTCAAGAACATGACCATGTGGCAACGCGTGAAGTACGTGAGAAGT
ACGGCAAAACTTTTGTGGAAGCGGTACGGATTGGTGGCGATTGGGACGAG
CTTGGTGCTGTACGTTGGAGGATTTGGAGTTGTGTACGCACTGCTAGCTA
CAGGCTTAGTGGACCCTAACGTGGCAACGCGTGAAGTACGTGAGAAGTAC
GGCAAAACTTTTGTGGAAGCGGTACGGATTGGTGGCGATTGGGACGAGCT
TGGTGCTGTACGTTGGAGGATTTGGAGTTGTGTACGCACTGCTAGCTACA
GGCTTAGTGGACCCTAACGTGGATACCTCAGACGTGATGCAGAGACTGGC
GGACTTCACGGGCGCCAGCAGCAATGACAGACTGGCGGATTACGTCAAAC
ACATGCAACATCTCGTCCGCACAAATAAGGACTACGAACATTTGTTCATG
GCCTTTGTGGTCAACGAGGCTCTCGAGCTTCCGCGTGACGTCGTTGTGCT
TCTCATCACGCCGCGCATCGCTCGAGCGTTGGGTACAGCGCCTTCGAGAG
ACACCAAGGAGACCAGATGAGTGGATACCTCAGACGTGATGCAGAGACTG
GCGGACTTCACGGGCGCCAGCAGCAATGACAGACTGGCGGATTACGTCAA
ACACATGCAACATCTCGTCCGCACAAATAAGGACTACGAACATTTGTTCA
TGGCCTTTGTGGTCAACGAGGCTCTCGAGCTTCCGCGTGACGTCGTTGTG
CTTCTCATCACGCCGCGCATCGCTCGAGCGTTGGGTACAGCGCCTTCGAG
AGACACCAAGGAGACCAGATGA
back to top