mRNA_F-serratus_M_contig1458.3237.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1458.3237.1 vs. uniprot
Match: D8LF09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF09_ECTSI) HSP 1 Score: 526 bits (1355), Expect = 1.200e-176 Identity = 304/555 (54.77%), Postives = 363/555 (65.41%), Query Frame = 1
Query: 271 LSFNHSRANTTALAESKTPAGAYQITRPRWYNKAEVAIILLLVQRLRLLDVRGVEHMLEATEDFRKQDPRDVMQRALFLMKMAPGANFRTVIRRHPRTLLVPVHKMERVFNIISSAYPDANVDRVVERIPSIFSRDATRLERNIAGLQKYAPEVNSAIFQAAPSMIFLPPATVEEKVADLRWHLPGMNLRNFLMGMPTALARSRQTVPRGLKELRKRFPTASPKELVRIIEAAPSLVRMSGVNGSLDIKVDALMALLPGVNMTNIISNAPGVLVRSTNSLPXXXXXXXXXXXXXXXXXXXXXXXXXLYLDMDRTVKPKALWIQQAVGLDQEGLDRLIEQGPWLLKAGWGPLARIEFAISTGIARKDRPAGLVGLVRRSRAAFAAAHHPAYANFLRQRLGEEMVSVDEAFEYNRGEEGA---HPEAWWRNSHVFMGGDRDGHVDVDREDSVK----------------TMKLKNA-----VAVEQGVVSEVDEERLMERTAAEVARLEDALGRGRKSRIGGVGDRQSGIRQESLSRLHGSPQEGDALLDLGREIIV 1863
L+ + A + A+A + A YQITRPRWYNKAEVAII+LL QRLR++D++GVEHML+A F K+DPRDV QRAL+L K APGANFRTVI+RHPRTLLVPVHKM+ V +++ + TRLE NIAGL+KYAPEVNSAIFQAAPSM++LP TVEEKVA LR LPG++L NFL GMPTALARS+QTVPRG+ +LR+RFP+AS +ELVRI+E+APSLVRMSG NGSL IKV L L P N+T ++S PG++ YLD+DRTV+ KA+WIQQAVGLDQEGLDRL+EQGPWLLKAGWGPLAR+EFAI G+A DRP+ + LVRRSR AFA AHH +Y +FLR++L EE + + EG HP AW G DG V R S K T +L+NA V +E G E D++ LMERTA EVA LEDALGRGRKSR+GGV DR Q L+RL GS EGDALLDLG+E IV
Sbjct: 3 LNASSDAATSLAVAPTSNSASGYQITRPRWYNKAEVAIIVLLCQRLRMIDLKGVEHMLDAAPKFAKEDPRDVWQRALYLSKAAPGANFRTVIQRHPRTLLVPVHKMQHVLSLLXXXXXXXXXXXXXXXXXXXXXXNTTRLEDNIAGLKKYAPEVNSAIFQAAPSMVYLPAHTVEEKVAALRACLPGIDLYNFLKGMPTALARSKQTVPRGMDQLRERFPSASNRELVRIVESAPSLVRMSGANGSLSIKVTKLQELFPSANVTKMVSRTPGIM----------------------------------YLDVDRTVRSKAMWIQQAVGLDQEGLDRLVEQGPWLLKAGWGPLARLEFAIEAGVATVDRPSTIFSLVRRSRLAFARAHHESYGSFLRKKLEEEAIELGGREGXXXXXEGGDLHHPLAW----RAAAGNAVDGGRRVSRPVSPKKGSGPKAASATLGGKRTARLENAGATPGVVLESGDGKEEDQDALMERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQSPLARLQGSRHEGDALLDLGKEKIV 519
BLAST of mRNA_F-serratus_M_contig1458.3237.1 vs. uniprot
Match: A0A6H5K0X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X3_9PHAE) HSP 1 Score: 345 bits (885), Expect = 1.280e-107 Identity = 218/435 (50.11%), Postives = 259/435 (59.54%), Query Frame = 1
Query: 763 MIFLPPATVEEKVADLRWHLPGMNLRNFLMGMPTALARSRQTVPRGLKELRKRFPTASPKELVRIIEAAPSLVRMSGVNGSLDIK-------------VDALMALLPGVNMTNIISNAPGVLVRSTNSLPXXXXXXXXXXXXXXXXXXXXXXXXXL----------------------------------YLDMDRTVKPKALWIQQAVGLDQEGLDRLIEQGPWLLKAGWGPLARIEFAISTGIARKDRPAGLVGLVRRSRAAFAAAHHPAYANFLRQRLGEEMVSVDEAFEYNRGEEGAHPEAWWRNSHVFMGGDRDGHVDVDRE----------------DSVKTMKLKNAVAVEQGVVSEV-----DEERLMERTAAEVARLEDALGRGRKSRIGGVGDRQSGIRQESLSRLHGSPQEGDALLDLGREIIV 1863
M++LP TVEEKVA LR LPG++L NFL GMPTALARS+QTVPRG+ +LR+RFP+AS +ELVRI+E+APSLVRMSG NGSL IK VD LM+LLPGVN+TN+ISNAPGVL+R SLP + YLD+DRTV+ KA+WIQQAVGLDQEGLDRL+EQGPWLLKAGWGPLAR+EFAI G+A DRP+ + LVRRSR AFA A+H +Y +FLR+++ EE + + HP AW G D +G V R D +T KL++A A GVV E D++ LMERTA EVA LEDALGRGRKSR+GGV DR Q L+RL GS EGDALLDLGRE IV
Sbjct: 1 MVYLPAHTVEEKVAALRACLPGIDLYNFLKGMPTALARSKQTVPRGMDQLRERFPSASNRELVRIVESAPSLVRMSGANGSLSIKASAERHFFVSVPTVDNLMSLLPGVNVTNVISNAPGVLIRGVTSLPTKDGAILSEQPPASFLCDHAFKTMTMVSQPRSHAGQVTKLQELFPSANVTKMVSRTPGIMYLDVDRTVRSKAMWIQQAVGLDQEGLDRLVEQGPWLLKAGWGPLARLEFAIEAGVATVDRPSTIFSLVRRSRLAFARAYHESYGSFLRKKIEEEAIEQGXXXXXXXXXDLRHPLAW----RAAAGNDVEGGRRVSRPVSPKKGSGPTAASATLDGKRTAKLEHAGATA-GVVLESGDGKEDKDALMERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQTPLARLQGSQHEGDALLDLGREKIV 430
BLAST of mRNA_F-serratus_M_contig1458.3237.1 vs. uniprot
Match: A0A6H5K0J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J9_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.900e-29 Identity = 68/127 (53.54%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 271 LSFNHSRANTTALAESKTPAGAYQITRPRWYNKAEVAIILLLVQRLRLLDVRGVEHMLEATEDFRKQDP-----------RDVMQRALFLMKMAPGANFRTVIRRHPRTLLVPVHKMERVFNIISSA 618
L+ + A + A+A + A AYQITRPRWYNKAEVAII+LL QRLR++D++GVEHML+A F K+DP RDV QRAL+L K APGANFRTVI+RHPR + RVF + A
Sbjct: 3 LNASSDAATSLAVAPASNSASAYQITRPRWYNKAEVAIIVLLCQRLRMIDLKGVEHMLDAAPKFAKEDPVREPVRSLKLQRDVWQRALYLSKAAPGANFRTVIQRHPR--------VRRVFRVKDGA 121 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1458.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1458.3237.1 >prot_F-serratus_M_contig1458.3237.1 ID=prot_F-serratus_M_contig1458.3237.1|Name=mRNA_F-serratus_M_contig1458.3237.1|organism=Fucus serratus male|type=polypeptide|length=601bp MKISSFFAAMTVMVQGFIVPPPSSCPKRSLAANFERLNSRSSSRGLPEESback to top mRNA from alignment at F-serratus_M_contig1458:173239..180251- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1458.3237.1 ID=mRNA_F-serratus_M_contig1458.3237.1|Name=mRNA_F-serratus_M_contig1458.3237.1|organism=Fucus serratus male|type=mRNA|length=7013bp|location=Sequence derived from alignment at F-serratus_M_contig1458:173239..180251- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1458:173239..180251- >mRNA_F-serratus_M_contig1458.3237.1 ID=mRNA_F-serratus_M_contig1458.3237.1|Name=mRNA_F-serratus_M_contig1458.3237.1|organism=Fucus serratus male|type=CDS|length=3606bp|location=Sequence derived from alignment at F-serratus_M_contig1458:173239..180251- (Fucus serratus male)back to top |