mRNA_F-serratus_M_contig145.3196.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig145.3196.1
Unique Name	mRNA_F-serratus_M_contig145.3196.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig145.3196.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig145.3196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig145	contig	F-serratus_M_contig145:746042..749692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	386
Cds size	309
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig145.3196.1	prot_F-serratus_M_contig145.3196.1	Fucus serratus male	polypeptide	F-serratus_M_contig145 746118..749692 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929431.3911705-UTR-F-serratus_M_contig145:746041..746117	1622929431.3911705-UTR-F-serratus_M_contig145:746041..746117	Fucus serratus male	UTR	F-serratus_M_contig145 746042..746117 +
1690962848.8359094-UTR-F-serratus_M_contig145:746041..746117	1690962848.8359094-UTR-F-serratus_M_contig145:746041..746117	Fucus serratus male	UTR	F-serratus_M_contig145 746042..746117 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929431.4054792-CDS-F-serratus_M_contig145:746117..746139	1622929431.4054792-CDS-F-serratus_M_contig145:746117..746139	Fucus serratus male	CDS	F-serratus_M_contig145 746118..746139 +
1690962848.843675-CDS-F-serratus_M_contig145:746117..746139	1690962848.843675-CDS-F-serratus_M_contig145:746117..746139	Fucus serratus male	CDS	F-serratus_M_contig145 746118..746139 +
1622929431.4259703-CDS-F-serratus_M_contig145:747207..747443	1622929431.4259703-CDS-F-serratus_M_contig145:747207..747443	Fucus serratus male	CDS	F-serratus_M_contig145 747208..747443 +
1690962848.8512795-CDS-F-serratus_M_contig145:747207..747443	1690962848.8512795-CDS-F-serratus_M_contig145:747207..747443	Fucus serratus male	CDS	F-serratus_M_contig145 747208..747443 +
1622929431.439727-CDS-F-serratus_M_contig145:749641..749692	1622929431.439727-CDS-F-serratus_M_contig145:749641..749692	Fucus serratus male	CDS	F-serratus_M_contig145 749642..749692 +
1690962848.859208-CDS-F-serratus_M_contig145:749641..749692	1690962848.859208-CDS-F-serratus_M_contig145:749641..749692	Fucus serratus male	CDS	F-serratus_M_contig145 749642..749692 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig145:746042..749692+
coding sequence from alignment at F-serratus_M_contig145:746042..749692+

protein sequence of mRNA_F-serratus_M_contig145.3196.1

>prot_F-serratus_M_contig145.3196.1 ID=prot_F-serratus_M_contig145.3196.1|Name=mRNA_F-serratus_M_contig145.3196.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MAKGTRDEKTGPIPKRGKTKGKAAGQRESAGPSVPSQDIPSAVDDAHPCS
PRATTGRGQSYALRAEEEEVVDYGDGDSDSPQEEDKVTRTKQMIRDAFAR
AEA

mRNA from alignment at F-serratus_M_contig145:746042..749692+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig145.3196.1 ID=mRNA_F-serratus_M_contig145.3196.1|Name=mRNA_F-serratus_M_contig145.3196.1|organism=Fucus serratus male|type=mRNA|length=3651bp|location=Sequence derived from alignment at F-serratus_M_contig145:746042..749692+ (Fucus serratus male)
AGCTCAAGGCTCCTGATCTCCTAACATTTGGCGACTGCGGGCAGGACTTC
GGCTGCAACGTTCGTCCATCTAGGCAATGGCGAAAGGCACTCGAGATGGT
GAGAAACCTAGACGCAGCCCTAGAATTGCGTCCACCACTTGTACTAGGTT
GAAGGAAGTAGAGCATGTCGATTTCGCTTCACCTCGCTCACAAAAATCAC
TGAAGGGGGATATTTTCGTAGACCCCACGGTGCGACCCAACTCCGAATTC
ATGGTATCTTCGAAACAACCGACGCTCAATCTGGTAGCATGGGCTGCCGC
CGAAGACTCTGGTAGGCAGCTCCCTGATTCTCCAATCGCGCCAGGAAACC
AAGCTGCTTGCATGAAATCTCCACCTGCTGTTTGCATGAAATCTTCACTT
TCACTTGACAATGCATTTTCATCTAGCCCTGCATCCGGGCATATCGCACC
TGCCCGAGATTCGGCTCTATCTCCCAATGAACTCGCACGAGACTCGTCCC
CATTTTCGAATAAACCTGTACTCGCGGAAAACACCGGAGACGTGAATGCC
CCGCCCCCCGTCGAGACCACCCATCGTCAGAGGATGGATGCTAGATCACC
AGCTGCCGCGAGGCTGCAAGGGAATCCTCGCGCAAGCGACGGTCCGACAG
GGGACGTCTGCGAGAGCACAAGCGGGTCAAGACCAAGAGACGTTCAGACG
GCCGGCATGCCCGAAGACACTCTTGGTACTAGTATGCTCGGAGAGATACT
CGGTCGAAGGGCCCCAAGATCAGCAGATCTCCAGGGACGTTCAAGGTTGC
CGAAGACCGCCAGTACGCTCGGAGAGGTACTCGGTGGAGGTATTTCCGCC
CGTGCGTCCGGAGGAGCACTGGGCCGTCACACTCTAACGCTAGACGGGAG
TCCTTGGGGAACCGATGGCCCATCAACTTCAAGGACGGAAGCCCTTGCCA
GAGGATCTGCTTTTGAGGAATCAAGATCCCCCTCGACGAGATTCTTCCTC
GAGCAGAGGCTAGATCTGAGTTCGCTCCGTCAAGTTCCCCATCAGGCTGC
CGAGTTATCATGCACATCCTCACATGCCAGAACGTTCCCTCAAGATCACG
TTAGTCACAGGCCCCCCGATTTTGCCTCGTTTCCGAACGTTCTTGTTGAC
CACTTACCTGTAACAGAGAAAACCGGCCCCATTCCAAAGCGAGGCAAGAC
AAAGGGCAAGGCAGCCGGGCAGCGAGAGTCAGCTGGGCCGTCCGTGCCAT
CACAAGATATCCCTTCGGCGGTCGACGACGCACACCCCTGCAGTCCGAGA
GCTACCACGGGACGAGGCCAGAGCTACGCATTGCGTGCAGAGGAGGAGGA
GGTGGTCGATTACGGCGACGGTGATTCGGACTCCCCCCAGGAAGAGGACA
AGGTGACTAGTGACGACGATCTGACGAACACGAATTTACAGCGTTTTTTC
AAGAACATGCCCCTGGTTGAAAAGCTCCGCATCCTGGGTGTCCGTAACGT
TGAAAATCTGACACCTCGTCTCACATCTTTGACTGCACGCAACATTGTAT
ATGACCGAGCATCAGGAATACCGTATTATCAGACTCGCGTGACGCATCGG
GGTCGATTGCCCTACCACCCACCAGTAGGGGGTGGCCATGCCCTTCACGC
CCCCCATCTCGGGGCAAGTCCCACGATCGCACCTGAACGCACCACAGTGT
CTCGTTCGAGGACTGGAGGGGGACTACTGCAACTACAAGAACCGCGGAGC
GGCCGCTTAAGCGCGGCTACGGGAACGCCTGCAGGCTGATGGCCAGTCCA
TCCGGATGGATGGCCAGTCACCAGATGGTGGCCGCCCGAGCGACGCCCCC
ATGCCAACCGTTCGCCACAAGGACCCCAATGGCGAAACGTCACTCCTCAT
CAGCTCGCCATTGGGGTCCTTGTGGCGAACGGTTGGCATGGGGGCGTCGC
TCGGGCGGCCACCATCTGGTGACTGGCCATCCGTCCGGATGGACTGGCCA
TCAGCCTGCAGGCGTTCCCGTAGCCGCGCTTCAGCGGCCGCTCCGCGGTT
TTTGTAGTTGCAGTAGTCCCCCTCCAGTCCTCGAACCTTCCCTTCTGCGT
CTTGAACCGCCTTGGCTACCCTCGCGAGTTCGAGGGCACGCGCCTGGTCG
TAACGGTCCCATCTCTGCTTCATTTCCAGCTTCAATTTTTCCCTGTCCCG
ATCCCAGGTATCCCTCGTGGCCTCCTGGGCCTCCTCGGTGGCCCTCACCG
CTGCTCTCGCCCCCGAACGCAACACAGCCACGCGCCTCACACAGCAGGTC
ATGGCACCGGATCCCACCTCGAGGGAATCCGCCGTCTCGGTGACCATGGA
CAGGAACGAGGCGGCGCTCTGTCAGCAGCGGTTAAAAACGCTGTATCCGG
TGATTGAGCAGGCGAGAGCAGCGGTGAGGGCCGCCGAGGAGGCCCAGGAG
GCCACGAGGGATACCTGGGATACCTGGGATCGGGACAGGGAAAAATTGAA
GCTGGAAATGAAGCAGAGATGGGACCGTTACGACCAGGCGCGTGCCCTCG
AACTCGCGAGGGTAGCCAAGGCGGTTCAAGACGCAGAAGGGAAGGTTCGA
GGACTGGAGGGGGACTACTGCAACTACAAGAATCGCGGAGCGGCCGCTGA
AGCGCGGCTACGGGAACGCCTGCAGGCTGATGGCCAGTCCATCCGGACGG
ATGGCCAGTCACCAGATGGTGGCCGCCCGAGCGACGCCCCCATGCCAACC
GTTCGCCACAAGGACCCCAATGGCGAAACGTCACTCCTCATAGTTCACCG
AGTTCCGCAAGCTCCGCGGGCTCCATCCCGACATGTCCGTCCAGGAATTC
GTGGACTTTCGCGCCTACGTCGACGGGAAGCAGGAGGCAGCAAAGAGGAG
GGAGGAAACTACTGGGCGCGGGCGACACTTCCAGGAGGATGCTAGGGGCC
GGGGCTCCCCGAGGAACAACAGACACGACCGCCAAGCGGGCGGGCGCCAT
TCCCGTCGGGGGGACTCCCGAGAGCGCCATCCCCGCGACCGAACTTCTGC
TGCCACGGGACCTAGGTGGGACGAGAAAAGTGATAGTTCTTGCTCTAGCT
CAGATTCCTCATACCGTGACGACCGACGTCACAGCCACAGGCGCGGAAGA
GTGAATAGTCAAGACCGTTCTGCGGAGTCCATTTCCTCACTCAGTTCACT
CGTGCAGAAACAATTGCCTGCCCCCCCTCTCCCAAGGCCACAGCATCTAG
CGCTTCCTACAGTACATCCCCCAGCCCCAAGCGAGCCCGCGTCTGAACCA
CTTTCCGTGCTCTTGTCCGAGATCTCCTCACGTCCCAGTCAGAGGGAAGA
CGTCAATCGGAAGTGCTACGCGTCCCTGGACACTAAGGGTCTAATGAAAT
TGCCCTCGATCCCTTTTGACATCGCGGACGGAAACTCCCAAATGAACCTT
GTCAACTTCACCTCATCTCTCAAAGAAGCTGTCACGCAGATAAGAGATCT
AGGTGAAAATTTCACTGATGATGGTTTTTGGATCCCAGGATGGCACAAGC
CGCTAATGCGTCATGTTCTCAACTCCGTGTCCCACCATTATCCCGCCCAG
GTGACGAGGACGAAGCAGATGATTCGGGACGCTTTTGCCAGAGCCGAAGC
C

Coding sequence (CDS) from alignment at F-serratus_M_contig145:746042..749692+

>mRNA_F-serratus_M_contig145.3196.1 ID=mRNA_F-serratus_M_contig145.3196.1|Name=mRNA_F-serratus_M_contig145.3196.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig145:746042..749692+ (Fucus serratus male)
ATGGCGAAAGGCACTCGAGATGATGGCGAAAGGCACTCGAGATGAGAAAA
CCGGCCCCATTCCAAAGCGAGGCAAGACAAAGGGCAAGGCAGCCGGGCAG
CGAGAGTCAGCTGGGCCGTCCGTGCCATCACAAGATATCCCTTCGGCGGT
CGACGACGCACACCCCTGCAGTCCGAGAGCTACCACGGGACGAGGCCAGA
GCTACGCATTGCGTGCAGAGGAGGAGGAGGTGGTCGATTACGGCGACGGT
GATTCGGACTCCCCCCAGGAAGAGGACAAGAGAAAACCGGCCCCATTCCA
AAGCGAGGCAAGACAAAGGGCAAGGCAGCCGGGCAGCGAGAGTCAGCTGG
GCCGTCCGTGCCATCACAAGATATCCCTTCGGCGGTCGACGACGCACACC
CCTGCAGTCCGAGAGCTACCACGGGACGAGGCCAGAGCTACGCATTGCGT
GCAGAGGAGGAGGAGGTGGTCGATTACGGCGACGGTGATTCGGACTCCCC
CCAGGAAGAGGACAAGGTGACGAGGACGAAGCAGATGATTCGGGACGCTT
TTGCCAGAGCCGAAGCCGTGACGAGGACGAAGCAGATGATTCGGGACGCT
TTTGCCAGAGCCGAAGCC