mRNA_F-serratus_M_contig1438.3132.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1438.3132.1
Unique NamemRNA_F-serratus_M_contig1438.3132.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1438.3132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1438contigF-serratus_M_contig1438:19907..22240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size329
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1438.3132.1prot_F-serratus_M_contig1438.3132.1Fucus serratus malepolypeptideF-serratus_M_contig1438 19955..22196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.0834603-UTR-F-serratus_M_contig1438:19906..199541622929424.0834603-UTR-F-serratus_M_contig1438:19906..19954Fucus serratus maleUTRF-serratus_M_contig1438 19907..19954 +
1690962845.3967264-UTR-F-serratus_M_contig1438:19906..199541690962845.3967264-UTR-F-serratus_M_contig1438:19906..19954Fucus serratus maleUTRF-serratus_M_contig1438 19907..19954 +
1622929424.1473148-UTR-F-serratus_M_contig1438:22196..222401622929424.1473148-UTR-F-serratus_M_contig1438:22196..22240Fucus serratus maleUTRF-serratus_M_contig1438 22197..22240 +
1690962845.4346955-UTR-F-serratus_M_contig1438:22196..222401690962845.4346955-UTR-F-serratus_M_contig1438:22196..22240Fucus serratus maleUTRF-serratus_M_contig1438 22197..22240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.1001787-CDS-F-serratus_M_contig1438:19954..200891622929424.1001787-CDS-F-serratus_M_contig1438:19954..20089Fucus serratus maleCDSF-serratus_M_contig1438 19955..20089 +
1690962845.408422-CDS-F-serratus_M_contig1438:19954..200891690962845.408422-CDS-F-serratus_M_contig1438:19954..20089Fucus serratus maleCDSF-serratus_M_contig1438 19955..20089 +
1622929424.113861-CDS-F-serratus_M_contig1438:20974..210551622929424.113861-CDS-F-serratus_M_contig1438:20974..21055Fucus serratus maleCDSF-serratus_M_contig1438 20975..21055 +
1690962845.4184606-CDS-F-serratus_M_contig1438:20974..210551690962845.4184606-CDS-F-serratus_M_contig1438:20974..21055Fucus serratus maleCDSF-serratus_M_contig1438 20975..21055 +
1622929424.1306248-CDS-F-serratus_M_contig1438:22175..221961622929424.1306248-CDS-F-serratus_M_contig1438:22175..22196Fucus serratus maleCDSF-serratus_M_contig1438 22176..22196 +
1690962845.4266253-CDS-F-serratus_M_contig1438:22175..221961690962845.4266253-CDS-F-serratus_M_contig1438:22175..22196Fucus serratus maleCDSF-serratus_M_contig1438 22176..22196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1438.3132.1

>prot_F-serratus_M_contig1438.3132.1 ID=prot_F-serratus_M_contig1438.3132.1|Name=mRNA_F-serratus_M_contig1438.3132.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MRAIFRNSVFLGFSDSTIPLFQSLGINSAIVLIARFIAASHLLCQENGGP
SAGVGRGRRRFPPAIGGTRTPEAPAQSR*
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mRNA from alignment at F-serratus_M_contig1438:19907..22240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1438.3132.1 ID=mRNA_F-serratus_M_contig1438.3132.1|Name=mRNA_F-serratus_M_contig1438.3132.1|organism=Fucus serratus male|type=mRNA|length=2334bp|location=Sequence derived from alignment at F-serratus_M_contig1438:19907..22240+ (Fucus serratus male)
CGGAGAATATCGCGCTTCTATAATATATCGGCAAAGCGCCTACTAAAAAT
GCGGGCAATATTCAGGAACTCCGTCTTTTTGGGATTTAGTGACAGCACAA
TACCGCTCTTTCAGTCTCTGGGCATCAATTCCGCCATCGTTCTCATCGCA
CGCTTCATCGCGGCATCACACCTTCTGTGTCAGGTACGATGCTCGGCGGG
TTGCATCATGACTCTTCTTACGAGAGTGCATCGGGAGGGCCTGGGAAGTT
TCGCGTTTTGTGGTCCAAATGAACTTGAGCAGTCGTGATCTATCTACCTT
GTTCCTCCCAGTTCGCGGAGCAGTGAGACACGGGGAGTCCAGATAATTTC
GGGGCTCTGGCAAGCAGCAGCAGTCAAGCCAAGAAAAGAATGCGTGTGGC
AGTGTTTCCGAAGCGCAAAAGTGACGCGCCATGTTTGGATAAAACACTCA
CACTCTTTTTCCGTGATCGCACAGGATTTGGCCGGTGAAAGCGTGACAGT
TTACGATGAAAAGAACAATCCATATGCTACCAGTAATTGTTTTCTCGAAA
GCTCGAAATCGGCTGAAAGACGAATACGACTAACCCCTATTATACTAGTA
TAGCTCTAAAGCAATTCACCCAAGTATTGATGGTGGTTACAGTAGGTATT
CTTCGAAAAATAAAATCAAAATAATCCTCTTGGCCTGGCTTCTCCTCTGT
ATCTCAGGAGCTTGGTTTCATACTTTTATTTAGGGTGAAATTCTGTAGAC
CTGTACATACTGTCTTGATAATAATATTGTACATAAAGAGCGGGCCGTCG
ACTTCGGGTGAACACTTACTGTTAACTACATGTACTAAAATATACTAGAC
TATAGAATTAATAGTACTGTTATATTATTAGGTAATATTTGTAGGTTAAA
CAGTGCGCATTCCACAAGTATCATTTTAAAACTATTATTTTAGTAGTATT
AGTAATACGAGTCAGTACCCATACTACCATGGCTCAAAATGACATATTTT
TAAGGCCTCTGCCGTTCAATGGTCTACGTTGTTTGCATCACGTCCTTTGC
CCTTGCTGGACATTTCAGGAGAACGGTGGACCCTCAGCGGGAGTTGGAAG
AGGAAGACGTCGATTCCCCCCAGCGATCGGGGGAACCCGCACCCCAGAGG
CGAGGGGTATATGTAGTGAAAGTACAGTGTATTAATAGGTTGTTGTACGT
GGGCACTACTACTGTTTGTTTTTCATTTTAGCCCTTACCCGCTACAGTAT
CAGATACTACACTATCAGCCAATAGTCTATGTATAATATAGCTAATGTAC
CTATTTCATACCTTGTAGTCTATTGCTTCCAAATTTACGAATTACCTCGA
ACTGTACTTGTGAAATTAACATCAACTTCCGAAACATTGTACAACTAAAG
GTGTCATAAAATCGATATTGGTCTATCATTATATTAGACTACTGTGTAGT
AGGAAAGTTTCTGTGTGGCAGCAACGTCCGACCGAAGGAATCCATGAGTT
GGTTAGGAAAGGAACTGGTATCGTACTGGGTTCAGTATATATGCAAGTGT
GTGTGTGTGTAGAGAGAGAGAGAGAGGCAGAGAGTATGTACAGGTAGGTA
TCTGCTAGGTGTTCGATTTTCAATTTTGCTATATACAACTGTACCATACA
TAGACTACAGTAGCTTCGACGGTCGAAATACTTCATTCGGTTGACGGCCA
ACCAAAACTGTGTGCGGCGGGCTACCCTGAGTACGAGGGGTAACCTGAGC
AGGGTAACCCATTAACGCCCGAAGTCGCGACCGGCTGCATGTCCATTATG
GGAGAGTTCCGGCTTTGCTTGCCACTACGTACAGGTACTACTGTAGCTCT
TTGTATAATAAATAATAATAGTGGGAGTACTTGAATAGTAATAGGTGGCA
TTCGTGCAAATTCGGGAACTCTCCTTAAATGGGCGTGGGGGTCGTTTGCT
TATGGTTGTCGCCCGACTGAAAAGCTGCGATGGTCTAATTTCCTGCACCT
GGCGCCCCGGACGACGCCCCCGCGAGGGGCCACCGCGGGTCAAACAGCTC
TGGCTGAGAGGCGTTATATCGACCAGCTGTGTATTGAGACCGCAAGATTT
TAAAATATGACTGTGCTGTAAATAGCCTTTACATTTTTTAGTACTGGCAT
GATATTGATATTTGTAGGTCGCTCACCAAGGACTCTCGAGTTTTCGGCGA
CCCCGTTTTCGCGTTCCACCCCGCCCATGCCGCTGCCACTGCCACTGCCA
CTGCCGCTTGTTTTCTCAGGCGCCCGCGCAAAGTCGTTAAGTTTTCGTAC
ACTAGGTGCAAAACGTGCCGTGTAGAAGGGCGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1438:19907..22240+

>mRNA_F-serratus_M_contig1438.3132.1 ID=mRNA_F-serratus_M_contig1438.3132.1|Name=mRNA_F-serratus_M_contig1438.3132.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig1438:19907..22240+ (Fucus serratus male)
ATGCGGGCAATATTCAGGAACTCCGTCTTTTTGGGATTTAGTGACAGCAC
AATACCGCTCTTTCAGTCTCTGGGCATCAATTCCGCCATCGTTCTCATCG
CACGCTTCATCGCGGCATCACACCTTCTGTGTCAGATGCGGGCAATATTC
AGGAACTCCGTCTTTTTGGGATTTAGTGACAGCACAATACCGCTCTTTCA
GTCTCTGGGCATCAATTCCGCCATCGTTCTCATCGCACGCTTCATCGCGG
CATCACACCTTCTGTGTCAGGAGAACGGTGGACCCTCAGCGGGAGTTGGA
AGAGGAAGACGTCGATTCCCCCCAGCGATCGGGGGAACCCGCACCCCAGA
GGAGAACGGTGGACCCTCAGCGGGAGTTGGAAGAGGAAGACGTCGATTCC
CCCCAGCGATCGGGGGAACCCGCACCCCAGAGGCGCCCGCGCAAAGTCGT
TAAGCGCCCGCGCAAAGTCGTTAA
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