mRNA_F-serratus_M_contig1437.3131.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1437.3131.1
Unique NamemRNA_F-serratus_M_contig1437.3131.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1437.3131.1 vs. uniprot
Match: D7FHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.150e-5
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = -2 
Query:  760 DWSVNKRRVKRLLRSMNSDAWTAAVSPTLNASS-RARDEPTGTNSDRGGGAAPSSSSCGSAMLAPIET 960
            DW VNKRRVKRLLRSMN+DAW AAV+ T+NA +  AR   T  N +      PS+ + G+++ A  ET
Sbjct:   69 DWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSARGSSTTANDNE----PPSAEAPGASVTAAAET 132
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1437.3131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHS4_ECTSI6.150e-551.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1437contigF-serratus_M_contig1437:240752..241712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size963
Cds size690
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.8884406-CDS-F-serratus_M_contig1437:240751..2414411622929422.8884406-CDS-F-serratus_M_contig1437:240751..241441Fucus serratus maleCDSF-serratus_M_contig1437 240752..241441 +
1690962844.823149-CDS-F-serratus_M_contig1437:240751..2414411690962844.823149-CDS-F-serratus_M_contig1437:240751..241441Fucus serratus maleCDSF-serratus_M_contig1437 240752..241441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.9034417-UTR-F-serratus_M_contig1437:241441..2417121622929422.9034417-UTR-F-serratus_M_contig1437:241441..241712Fucus serratus maleUTRF-serratus_M_contig1437 241442..241712 +
1690962844.8329837-UTR-F-serratus_M_contig1437:241441..2417121690962844.8329837-UTR-F-serratus_M_contig1437:241441..241712Fucus serratus maleUTRF-serratus_M_contig1437 241442..241712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1437.3131.1prot_F-serratus_M_contig1437.3131.1Fucus serratus malepolypeptideF-serratus_M_contig1437 240752..241441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1437.3131.1

>prot_F-serratus_M_contig1437.3131.1 ID=prot_F-serratus_M_contig1437.3131.1|Name=mRNA_F-serratus_M_contig1437.3131.1|organism=Fucus serratus male|type=polypeptide|length=230bp
KSAPRPRPRPPFADLTAPRTRTAGRPRGVARTRGRCKSFRPVDHLESEII
PTIVCYDVVVVAHDPDAPPLARAENLGGAAIFVTFVLGSWETEVGLQALH
RCRLQLEIRLEAKALAERIFFPSHHGPNTDVMLCFRHFPRRRRRDYGNSN
FDPRQDILGCVVPGSRPRAFCGPRGNRADSGDLANPRCSACRRPRGHGSG
VADVCAGAAITAISISSSLLRGSRESDGF*
back to top

mRNA from alignment at F-serratus_M_contig1437:240752..241712+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1437.3131.1 ID=mRNA_F-serratus_M_contig1437.3131.1|Name=mRNA_F-serratus_M_contig1437.3131.1|organism=Fucus serratus male|type=mRNA|length=961bp|location=Sequence derived from alignment at F-serratus_M_contig1437:240752..241712+ (Fucus serratus male)
AAATCAGCTCCGCGTCCACGACCACGACCACCCTTTGCGGACCTTACCGC
CCCAAGAACTCGTACTGCCGGACGCCCGCGCGGCGTCGCCCGTACCCGTG
GTCGCTGCAAGAGCTTCCGCCCTGTCGATCATCTCGAATCCGAGATCATC
CCCACGATCGTCTGTTACGATGTCGTCGTCGTCGCCCACGACCCCGATGC
CCCCCCGCTTGCCAGAGCCGAGAACCTCGGCGGCGCTGCCATCTTCGTCA
CCTTCGTCTTGGGCAGTTGGGAGACCGAGGTCGGCCTTCAAGCCCTCCAC
AGATGCCGCCTCCAGCTCGAAATCCGGCTCGAGGCGAAGGCTCTCGCTGA
GCGCATCTTCTTCCCCTCCCATCACGGACCCAACACCGATGTCATGCTCT
GCTTCCGCCACTTCCCGAGGCGCAGGCGCCGCGACTACGGCAACTCCAAT
TTCGATCCCCGGCAAGACATCCTCGGCTGCGTCGTCCCCGGCAGCAGGCC
TCGAGCCTTCTGCGGCCCCCGAGGCAACAGAGCAGACAGCGGGGATCTCG
CGAATCCCCGCTGCAGCGCCTGTCGGCGACCCAGGGGACACGGGAGCGGT
GTAGCAGACGTCTGCGCCGGAGCCGCAATCACCGCCATATCCATCTCTTC
CTCCTTGCTTAGGGGGAGTCGCGAGAGCGACGGTTTTTGACCCTGCGGCG
TTGGCGGCGGCCAACGCGGCCTTTTTCAAGCCGGACTTTCTGCGACCCGA
CGGTTTCTTCGTCTCGATGGGCGCCAGCATTGCAGACCCGCAGGAAGAGG
AGGACGGGGCGGCGCCGCCGCCGCGATCTGAATTTGTGCCGGTTGGCTCG
TCTCTAGCGCGCGAAGACGCATTGAGGGTAGGACTGACCGCGGCCGTCCA
TGCGTCGCTGTTCATCGACCGGAGTAACCTCTTTACCCGGCGCTTGTTGA
CCGACCAGTCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1437:240752..241712+

>mRNA_F-serratus_M_contig1437.3131.1 ID=mRNA_F-serratus_M_contig1437.3131.1|Name=mRNA_F-serratus_M_contig1437.3131.1|organism=Fucus serratus male|type=CDS|length=1380bp|location=Sequence derived from alignment at F-serratus_M_contig1437:240752..241712+ (Fucus serratus male)
AAATCAGCTCCGCGTCCACGACCACGACCACCCTTTGCGGACCTTACCGC
CCCAAGAACTCGTACTGCCGGACGCCCGCGCGGCGTCGCCCGTACCCGTG
GTCGCTGCAAGAGCTTCCGCCCTGTCGATCATCTCGAATCCGAGATCATC
CCCACGATCGTCTGTTACGATGTCGTCGTCGTCGCCCACGACCCCGATGC
CCCCCCGCTTGCCAGAGCCGAGAACCTCGGCGGCGCTGCCATCTTCGTCA
CCTTCGTCTTGGGCAGTTGGGAGACCGAGGTCGGCCTTCAAGCCCTCCAC
AGATGCCGCCTCCAGCTCGAAATCCGGCTCGAGGCGAAGGCTCTCGCTGA
GCGCATCTTCTTCCCCTCCCATCACGGACCCAACACCGATGTCATGCTCT
GCTTCCGCCACTTCCCGAGGCGCAGGCGCCGCGACTACGGCAACTCCAAT
TTCGATCCCCGGCAAGACATCCTCGGCTGCGTCGTCCCCGGCAGCAGGCC
TCGAGCCTTCTGCGGCCCCCGAGGCAACAGAGCAGACAGCGGGGATCTCG
CGAATCCCCGCTGCAGCGCCTGTCGGCGACCCAGGGGACACGGGAGCGGT
GTAGCAGACGTCTGCGCCGGAGCCGCAATCACCGCCATATCCATCTCTTC
CTCCTTGCTTAGGGGGAGTCGCGAGAGCGACGGTTTTTGAAAATCAGCTC
CGCGTCCACGACCACGACCACCCTTTGCGGACCTTACCGCCCCAAGAACT
CGTACTGCCGGACGCCCGCGCGGCGTCGCCCGTACCCGTGGTCGCTGCAA
GAGCTTCCGCCCTGTCGATCATCTCGAATCCGAGATCATCCCCACGATCG
TCTGTTACGATGTCGTCGTCGTCGCCCACGACCCCGATGCCCCCCCGCTT
GCCAGAGCCGAGAACCTCGGCGGCGCTGCCATCTTCGTCACCTTCGTCTT
GGGCAGTTGGGAGACCGAGGTCGGCCTTCAAGCCCTCCACAGATGCCGCC
TCCAGCTCGAAATCCGGCTCGAGGCGAAGGCTCTCGCTGAGCGCATCTTC
TTCCCCTCCCATCACGGACCCAACACCGATGTCATGCTCTGCTTCCGCCA
CTTCCCGAGGCGCAGGCGCCGCGACTACGGCAACTCCAATTTCGATCCCC
GGCAAGACATCCTCGGCTGCGTCGTCCCCGGCAGCAGGCCTCGAGCCTTC
TGCGGCCCCCGAGGCAACAGAGCAGACAGCGGGGATCTCGCGAATCCCCG
CTGCAGCGCCTGTCGGCGACCCAGGGGACACGGGAGCGGTGTAGCAGACG
TCTGCGCCGGAGCCGCAATCACCGCCATATCCATCTCTTCCTCCTTGCTT
AGGGGGAGTCGCGAGAGCGACGGTTTTTGA
back to top