mRNA_F-serratus_M_contig1437.3125.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1437.3125.1
Unique NamemRNA_F-serratus_M_contig1437.3125.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1437.3125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1437contigF-serratus_M_contig1437:142824..146297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2837
Cds size1767
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1437.3125.1prot_F-serratus_M_contig1437.3125.1Fucus serratus malepolypeptideF-serratus_M_contig1437 142921..144687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.5478344-UTR-F-serratus_M_contig1437:142823..1429201622929422.5478344-UTR-F-serratus_M_contig1437:142823..142920Fucus serratus maleUTRF-serratus_M_contig1437 142824..142920 +
1690962844.7626328-UTR-F-serratus_M_contig1437:142823..1429201690962844.7626328-UTR-F-serratus_M_contig1437:142823..142920Fucus serratus maleUTRF-serratus_M_contig1437 142824..142920 +
1622929422.57141-UTR-F-serratus_M_contig1437:144687..1446911622929422.57141-UTR-F-serratus_M_contig1437:144687..144691Fucus serratus maleUTRF-serratus_M_contig1437 144688..144691 +
1690962844.781018-UTR-F-serratus_M_contig1437:144687..1446911690962844.781018-UTR-F-serratus_M_contig1437:144687..144691Fucus serratus maleUTRF-serratus_M_contig1437 144688..144691 +
1622929422.6131163-UTR-F-serratus_M_contig1437:145328..1462971622929422.6131163-UTR-F-serratus_M_contig1437:145328..146297Fucus serratus maleUTRF-serratus_M_contig1437 145329..146297 +
1690962844.7907686-UTR-F-serratus_M_contig1437:145328..1462971690962844.7907686-UTR-F-serratus_M_contig1437:145328..146297Fucus serratus maleUTRF-serratus_M_contig1437 145329..146297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.5590067-CDS-F-serratus_M_contig1437:142920..1446871622929422.5590067-CDS-F-serratus_M_contig1437:142920..144687Fucus serratus maleCDSF-serratus_M_contig1437 142921..144687 +
1690962844.7717886-CDS-F-serratus_M_contig1437:142920..1446871690962844.7717886-CDS-F-serratus_M_contig1437:142920..144687Fucus serratus maleCDSF-serratus_M_contig1437 142921..144687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1437.3125.1

>prot_F-serratus_M_contig1437.3125.1 ID=prot_F-serratus_M_contig1437.3125.1|Name=mRNA_F-serratus_M_contig1437.3125.1|organism=Fucus serratus male|type=polypeptide|length=589bp
MVKVTSRKKCRTDGCGKSPSFGLVSTRSAEYCKQHAPDGMVRVTNTTKCR
TIGCSKSPSFGVIGTRTPEYCAIHAQDGMVNVAARKCIADGCSKSPSMGV
AGSKKVKYCTKHAPDGMVNVMNRKKCRTQNCGKYPSFGVLNMRSAQYCKQ
HAPDGMVNVCSRRECKTIGCSKRPSFGVAGTRVPAYCAGHAPDGMVNVVS
RKCRADGCEKFSSFGMVDIKTPEYCAEHAQNGMVNVIIRRCRTDGCDKFP
SFGVAFTRKPEYCKQHALDTMVNVKRKSCIADGCNRESSFGVAGTRIPEY
CAKHTPGGMINVKKSKKFKTKNRGNQPSLGAAETTTPEYCVNDPLYGEMV
DVCSEKCTTKNCGKRPSFEAAVTRTVEHCAQHAPDGMADVCSRKCRSEGC
GKHPSFGVAGSRKGDYCEQHATNGMVDVMNRKRTTKERGNRPLYGTTDHT
KSLDYCVHDAKDRMVDAFTDDCASGGDAWQRYTVDGFKRCEIVGPRHSEE
EIAVNASPSDVQRKGVDPSSPLASAPSGSIGDSYKRARRQDIVSATGALA
VAPACTAAGAVNMPVVDGQTTSSAARDSSVKTEVQLSL*
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mRNA from alignment at F-serratus_M_contig1437:142824..146297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1437.3125.1 ID=mRNA_F-serratus_M_contig1437.3125.1|Name=mRNA_F-serratus_M_contig1437.3125.1|organism=Fucus serratus male|type=mRNA|length=3474bp|location=Sequence derived from alignment at F-serratus_M_contig1437:142824..146297+ (Fucus serratus male)
AAAAAAGTGCACAACCGACGACTGCGGCAAGCTTCCGTCGTTTGGACTGG
CCGGTACGAGAACAGCGGAGTACTGCGCAAAACACGCCCTGGAAGGGATG
GTCAAAGTCACGAGCAGAAAGAAGTGCAGAACCGACGGCTGTGGCAAGTC
TCCGTCATTTGGATTGGTAAGTACGAGGTCGGCAGAGTACTGTAAACAGC
ACGCCCCGGACGGGATGGTCCGCGTAACGAACACAACAAAATGCAGAACC
ATAGGCTGTAGCAAGTCTCCGTCGTTCGGAGTGATCGGTACCAGAACGCC
AGAGTACTGTGCAATACACGCCCAGGATGGGATGGTTAACGTCGCCGCCA
GAAAGTGCATAGCCGACGGCTGCAGCAAGTCTCCGTCGATGGGAGTGGCC
GGCTCAAAAAAAGTCAAATACTGCACGAAACACGCCCCGGATGGGATGGT
CAACGTCATGAACAGAAAGAAGTGCAGAACACAAAACTGCGGCAAGTACC
CGTCATTTGGTGTGCTAAATATGAGATCGGCACAGTACTGCAAACAGCAC
GCCCCGGACGGGATGGTCAACGTCTGCAGCAGAAGGGAGTGCAAAACCAT
AGGCTGCAGCAAGCGGCCATCGTTTGGAGTGGCCGGTACCAGAGTACCAG
CGTACTGCGCAGGACACGCCCCGGATGGCATGGTTAACGTCGTCTCCAGG
AAGTGCAGAGCCGACGGCTGCGAAAAGTTTTCGTCGTTCGGGATGGTCGA
TATCAAAACACCAGAGTACTGTGCAGAACACGCCCAGAATGGGATGGTTA
ACGTCATTATCAGAAGGTGCAGAACCGACGGCTGCGACAAGTTTCCGTCG
TTCGGAGTAGCCTTCACGAGAAAGCCGGAGTACTGCAAACAGCACGCCCT
GGATACGATGGTCAACGTCAAGAGAAAAAGCTGCATAGCGGACGGCTGCA
ACAGGGAATCGTCGTTCGGAGTGGCCGGTACCAGAATACCAGAGTACTGC
GCAAAACACACCCCGGGTGGGATGATCAACGTGAAGAAGAGCAAAAAGTT
CAAAACCAAAAACCGCGGCAATCAACCGTCGCTCGGAGCAGCCGAAACGA
CGACACCAGAGTATTGCGTTAACGACCCTCTGTATGGTGAGATGGTGGAC
GTCTGCAGCGAGAAGTGCACAACTAAAAACTGCGGCAAGCGGCCTTCGTT
TGAAGCGGCCGTTACGAGAACGGTGGAGCACTGCGCGCAACACGCCCCGG
ATGGGATGGCCGACGTTTGCAGCAGAAAATGCAGAAGCGAGGGCTGCGGC
AAGCACCCGTCGTTCGGGGTTGCCGGCTCAAGGAAGGGGGATTACTGCGA
GCAACACGCCACGAACGGAATGGTTGACGTCATGAACAGGAAGCGCACTA
CCAAAGAACGCGGCAACCGGCCGTTGTACGGAACGACTGACCATACAAAA
TCATTGGATTACTGCGTACATGACGCCAAAGATAGAATGGTCGACGCCTT
CACCGATGATTGCGCTAGTGGAGGCGACGCGTGGCAAAGATATACGGTCG
ACGGGTTCAAGAGGTGCGAAATTGTTGGCCCACGCCACTCTGAGGAAGAA
ATTGCTGTCAACGCAAGTCCGAGTGACGTACAGCGAAAAGGCGTTGATCC
TTCTTCTCCCCTGGCAAGCGCTCCTTCGGGCAGCATCGGAGATTCTTATA
AGCGAGCACGACGGCAAGACATTGTGTCTGCGACTGGGGCGCTCGCTGTC
GCCCCAGCATGTACTGCTGCAGGAGCGGTGAATATGCCCGTGGTCGATGG
TCAAACTACTTCTTCCGCCGCTCGAGATTCTTCTGTGAAGACGGAGGTGC
AGCTCTCCTTGTAGCCAGGTATACCGTGCGAGATCGCAATATCCGTTGGC
TAGATAGTATCATGTATAATGCGAAAACGCTGACCGGAGCGCCTTGGTAT
ACTGTCGCTAATATCCCGTCTCGTTACCCGTTTTTGATTCGTGCTTCCTC
GAGAAGCGGTGAGTCCAACCCCGCTGTTATCCCATTTCTCTTCAATATAT
ATCTATATACCAGGGGTAGTCTATATTTTTTACATAATTTATACCTGGTA
CATTTATAACTGAACTTTTCACTAACAGCAAAGCTTGAAATTGGTAAACC
CGAAGAAGCAATATATACTGTAAACTCTTTTTATAAATATTAAAAGACTC
ATAATTTTTTCTTTCAAATATTGTAGAGAGACGTTCAAATATCCCAATTT
TTTATGTATCTCCGCGATTCCTAATTCAATTTCTATCTTATATACAGTAT
TAAATTATTTACCCAGGCAAATCTTTTAAACAGTTGGAATCGGTTCCTGT
TAAAACACTTATCAGATAACAATCTTGAAAGCGTAAGATTACGGGCCTTC
TAGACCCTCCTGAGCTTGGAGTACAGCCATCCTCTTAACAAAGCAAGCCA
ATCGCACTTCGCCCCCACGACGTTGTGCTGCCGTTCTCCCGCCTTTCGAA
CGCAGGTACTATTACTATGTAGAGTACAGCACTTCGAGCACTGTGGTAAG
GCAAGAGCGCGGTATCGATACTGCTGTTGCCGCCGCCGAGACGCCGCTAG
GTCGACGGTGAACAGAGGAGGTTCATGTCGTGCTTGCCCGTGGCACACCC
TAACAGAAAATTCCGTTGTATCATAGCGTACCAGTAGAGACATCCTTCTT
GTACTTGTAGTATTACTGTACAAAGTGTCCGTGCGTTGTTCCACCCTTGA
ATTGCCAGTACAGTACATCATTACTTGCATACGTCGTGATGCGACGACAT
GAACATAAGAGCGAACGGCGACCGTCGGGTGGCATCGGCCCAAAGGACGG
TGATCGAAACGATTAATGGCCTCTACAAGTCTCCAGCCCAGTCTGCTCGG
AATGTGATGACCAGACCAACACCAACGGCAACACGTCTTCGCGATGATTC
CCTTCGGCCGTGGCAGGGGTTTTTTCCCATGAGGAAGGCAAGGCAAGGCA
AGTAGATCATACGAAAGGGGCGGTAGGGTGGTAGTCTGTCTACCCATTTG
ACGCGTATTGGGTACCGCCGCCTCAATATGTGTTTGAATCTTCCGGCTTT
GAAGGGCGGGGTGTCTCTTTTCGTTCCGGCGTCGCTTTCTCCTGGCGTCG
TAGTGTATTAATAGTATATATCTCGAGTGCCGCCTCGACGAATAGCATCC
CAGCTTTGCAACAGCCGTGATCGACCAAGTTTGTTGTGCTCCTACATGGT
AAAATGTACCGGTCCAAACTGTTTGATAGTTATAGCGGCAAAGCAGTTTG
CCAGTATCCATCATAGTAGGGGGTCTAGGGAAGGTGCAGGATCAATGGAT
CAATTCATCACCCGGTTCCTCTAATAATAAGATATAATTACGGTAACTGT
AGCAATAGCTCCCGCCTCGATATTTATCACCACAGGCGGGAACAGGGGGA
CACGATCTAGCGCGTCATTCCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1437:142824..146297+

>mRNA_F-serratus_M_contig1437.3125.1 ID=mRNA_F-serratus_M_contig1437.3125.1|Name=mRNA_F-serratus_M_contig1437.3125.1|organism=Fucus serratus male|type=CDS|length=3534bp|location=Sequence derived from alignment at F-serratus_M_contig1437:142824..146297+ (Fucus serratus male)
ATGGTCAAAGTCACGAGCAGAAAGAAGTGCAGAACCGACGGCTGTGGCAA
GTCTCCGTCATTTGGATTGGTAAGTACGAGGTCGGCAGAGTACTGTAAAC
AGCACGCCCCGGACGGGATGGTCCGCGTAACGAACACAACAAAATGCAGA
ACCATAGGCTGTAGCAAGTCTCCGTCGTTCGGAGTGATCGGTACCAGAAC
GCCAGAGTACTGTGCAATACACGCCCAGGATGGGATGGTTAACGTCGCCG
CCAGAAAGTGCATAGCCGACGGCTGCAGCAAGTCTCCGTCGATGGGAGTG
GCCGGCTCAAAAAAAGTCAAATACTGCACGAAACACGCCCCGGATGGGAT
GGTCAACGTCATGAACAGAAAGAAGTGCAGAACACAAAACTGCGGCAAGT
ACCCGTCATTTGGTGTGCTAAATATGAGATCGGCACAGTACTGCAAACAG
CACGCCCCGGACGGGATGGTCAACGTCTGCAGCAGAAGGGAGTGCAAAAC
CATAGGCTGCAGCAAGCGGCCATCGTTTGGAGTGGCCGGTACCAGAGTAC
CAGCGTACTGCGCAGGACACGCCCCGGATGGCATGGTTAACGTCGTCTCC
AGGAAGTGCAGAGCCGACGGCTGCGAAAAGTTTTCGTCGTTCGGGATGGT
CGATATCAAAACACCAGAGTACTGTGCAGAACACGCCCAGAATGGGATGG
TTAACGTCATTATCAGAAGGTGCAGAACCGACGGCTGCGACAAGTTTCCG
TCGTTCGGAGTAGCCTTCACGAGAAAGCCGGAGTACTGCAAACAGCACGC
CCTGGATACGATGGTCAACGTCAAGAGAAAAAGCTGCATAGCGGACGGCT
GCAACAGGGAATCGTCGTTCGGAGTGGCCGGTACCAGAATACCAGAGTAC
TGCGCAAAACACACCCCGGGTGGGATGATCAACGTGAAGAAGAGCAAAAA
GTTCAAAACCAAAAACCGCGGCAATCAACCGTCGCTCGGAGCAGCCGAAA
CGACGACACCAGAGTATTGCGTTAACGACCCTCTGTATGGTGAGATGGTG
GACGTCTGCAGCGAGAAGTGCACAACTAAAAACTGCGGCAAGCGGCCTTC
GTTTGAAGCGGCCGTTACGAGAACGGTGGAGCACTGCGCGCAACACGCCC
CGGATGGGATGGCCGACGTTTGCAGCAGAAAATGCAGAAGCGAGGGCTGC
GGCAAGCACCCGTCGTTCGGGGTTGCCGGCTCAAGGAAGGGGGATTACTG
CGAGCAACACGCCACGAACGGAATGGTTGACGTCATGAACAGGAAGCGCA
CTACCAAAGAACGCGGCAACCGGCCGTTGTACGGAACGACTGACCATACA
AAATCATTGGATTACTGCGTACATGACGCCAAAGATAGAATGGTCGACGC
CTTCACCGATGATTGCGCTAGTGGAGGCGACGCGTGGCAAAGATATACGG
TCGACGGGTTCAAGAGGTGCGAAATTGTTGGCCCACGCCACTCTGAGGAA
GAAATTGCTGTCAACGCAAGTCCGAGTGACGTACAGCGAAAAGGCGTTGA
TCCTTCTTCTCCCCTGGCAAGCGCTCCTTCGGGCAGCATCGGAGATTCTT
ATAAGCGAGCACGACGGCAAGACATTGTGTCTGCGACTGGGGCGCTCGCT
GTCGCCCCAGCATGTACTGCTGCAGGAGCGGTGAATATGCCCGTGGTCGA
TGGTCAAACTACTTCTTCCGCCGCTCGAGATTCTTCTGTGAAGACGGAGG
TGCAGCTCTCCTTGTAGATGGTCAAAGTCACGAGCAGAAAGAAGTGCAGA
ACCGACGGCTGTGGCAAGTCTCCGTCATTTGGATTGGTAAGTACGAGGTC
GGCAGAGTACTGTAAACAGCACGCCCCGGACGGGATGGTCCGCGTAACGA
ACACAACAAAATGCAGAACCATAGGCTGTAGCAAGTCTCCGTCGTTCGGA
GTGATCGGTACCAGAACGCCAGAGTACTGTGCAATACACGCCCAGGATGG
GATGGTTAACGTCGCCGCCAGAAAGTGCATAGCCGACGGCTGCAGCAAGT
CTCCGTCGATGGGAGTGGCCGGCTCAAAAAAAGTCAAATACTGCACGAAA
CACGCCCCGGATGGGATGGTCAACGTCATGAACAGAAAGAAGTGCAGAAC
ACAAAACTGCGGCAAGTACCCGTCATTTGGTGTGCTAAATATGAGATCGG
CACAGTACTGCAAACAGCACGCCCCGGACGGGATGGTCAACGTCTGCAGC
AGAAGGGAGTGCAAAACCATAGGCTGCAGCAAGCGGCCATCGTTTGGAGT
GGCCGGTACCAGAGTACCAGCGTACTGCGCAGGACACGCCCCGGATGGCA
TGGTTAACGTCGTCTCCAGGAAGTGCAGAGCCGACGGCTGCGAAAAGTTT
TCGTCGTTCGGGATGGTCGATATCAAAACACCAGAGTACTGTGCAGAACA
CGCCCAGAATGGGATGGTTAACGTCATTATCAGAAGGTGCAGAACCGACG
GCTGCGACAAGTTTCCGTCGTTCGGAGTAGCCTTCACGAGAAAGCCGGAG
TACTGCAAACAGCACGCCCTGGATACGATGGTCAACGTCAAGAGAAAAAG
CTGCATAGCGGACGGCTGCAACAGGGAATCGTCGTTCGGAGTGGCCGGTA
CCAGAATACCAGAGTACTGCGCAAAACACACCCCGGGTGGGATGATCAAC
GTGAAGAAGAGCAAAAAGTTCAAAACCAAAAACCGCGGCAATCAACCGTC
GCTCGGAGCAGCCGAAACGACGACACCAGAGTATTGCGTTAACGACCCTC
TGTATGGTGAGATGGTGGACGTCTGCAGCGAGAAGTGCACAACTAAAAAC
TGCGGCAAGCGGCCTTCGTTTGAAGCGGCCGTTACGAGAACGGTGGAGCA
CTGCGCGCAACACGCCCCGGATGGGATGGCCGACGTTTGCAGCAGAAAAT
GCAGAAGCGAGGGCTGCGGCAAGCACCCGTCGTTCGGGGTTGCCGGCTCA
AGGAAGGGGGATTACTGCGAGCAACACGCCACGAACGGAATGGTTGACGT
CATGAACAGGAAGCGCACTACCAAAGAACGCGGCAACCGGCCGTTGTACG
GAACGACTGACCATACAAAATCATTGGATTACTGCGTACATGACGCCAAA
GATAGAATGGTCGACGCCTTCACCGATGATTGCGCTAGTGGAGGCGACGC
GTGGCAAAGATATACGGTCGACGGGTTCAAGAGGTGCGAAATTGTTGGCC
CACGCCACTCTGAGGAAGAAATTGCTGTCAACGCAAGTCCGAGTGACGTA
CAGCGAAAAGGCGTTGATCCTTCTTCTCCCCTGGCAAGCGCTCCTTCGGG
CAGCATCGGAGATTCTTATAAGCGAGCACGACGGCAAGACATTGTGTCTG
CGACTGGGGCGCTCGCTGTCGCCCCAGCATGTACTGCTGCAGGAGCGGTG
AATATGCCCGTGGTCGATGGTCAAACTACTTCTTCCGCCGCTCGAGATTC
TTCTGTGAAGACGGAGGTGCAGCTCTCCTTGTAG
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